Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1262 and Pf1N1B4_1263 overlap by 4 nucleotides Pf1N1B4_1263 and Pf1N1B4_1264 overlap by 47 nucleotides
Pf1N1B4_1262 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 1,441,902 to 1,444,295
_1262
Pf1N1B4_1263 - Cu(I)-responsive transcriptional regulator, at 1,444,292 to 1,444,705
_1263
Pf1N1B4_1264 - Integral membrane efflux protein, at 1,444,659 to 1,445,873
_1264
Position (kb)
1444
1445 Strain fitness (log2 ratio)
-2
-1
0
1 at 1443.785 kb on - strand, within Pf1N1B4_1262 at 1444.108 kb on - strand at 1444.146 kb on + strand at 1444.146 kb on + strand at 1444.146 kb on + strand at 1444.147 kb on - strand at 1444.147 kb on - strand at 1444.147 kb on - strand at 1444.249 kb on + strand at 1444.349 kb on + strand, within Pf1N1B4_1263 at 1444.349 kb on + strand, within Pf1N1B4_1263 at 1444.406 kb on + strand, within Pf1N1B4_1263 at 1444.426 kb on + strand, within Pf1N1B4_1263 at 1444.427 kb on - strand, within Pf1N1B4_1263 at 1444.618 kb on - strand, within Pf1N1B4_1263 at 1444.789 kb on + strand, within Pf1N1B4_1264 at 1444.790 kb on - strand, within Pf1N1B4_1264 at 1444.964 kb on - strand, within Pf1N1B4_1264 at 1445.055 kb on - strand, within Pf1N1B4_1264 at 1445.360 kb on - strand, within Pf1N1B4_1264 at 1445.360 kb on - strand, within Pf1N1B4_1264 at 1445.360 kb on - strand, within Pf1N1B4_1264 at 1445.360 kb on - strand, within Pf1N1B4_1264 at 1445.360 kb on - strand, within Pf1N1B4_1264 at 1445.512 kb on - strand, within Pf1N1B4_1264 at 1445.683 kb on + strand, within Pf1N1B4_1264
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,443,785 - Pf1N1B4_1262 0.79 -0.3 1,444,108 - +0.6 1,444,146 + -1.9 1,444,146 + -0.3 1,444,146 + -2.3 1,444,147 - -1.7 1,444,147 - +1.0 1,444,147 - +0.7 1,444,249 + -0.3 1,444,349 + Pf1N1B4_1263 0.14 +1.0 1,444,349 + Pf1N1B4_1263 0.14 -0.9 1,444,406 + Pf1N1B4_1263 0.28 +1.6 1,444,426 + Pf1N1B4_1263 0.32 +0.3 1,444,427 - Pf1N1B4_1263 0.33 -0.3 1,444,618 - Pf1N1B4_1263 0.79 +0.7 1,444,789 + Pf1N1B4_1264 0.11 +0.3 1,444,790 - Pf1N1B4_1264 0.11 +0.8 1,444,964 - Pf1N1B4_1264 0.25 +1.1 1,445,055 - Pf1N1B4_1264 0.33 -0.3 1,445,360 - Pf1N1B4_1264 0.58 -0.1 1,445,360 - Pf1N1B4_1264 0.58 +0.3 1,445,360 - Pf1N1B4_1264 0.58 +0.9 1,445,360 - Pf1N1B4_1264 0.58 -0.7 1,445,360 - Pf1N1B4_1264 0.58 -0.3 1,445,512 - Pf1N1B4_1264 0.70 -0.3 1,445,683 + Pf1N1B4_1264 0.84 -0.8
Or see this region's nucleotide sequence