Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1190 and Pf1N1B4_1191 are separated by 129 nucleotides Pf1N1B4_1191 and Pf1N1B4_1192 are separated by 398 nucleotides
Pf1N1B4_1190 - Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing, at 1,341,300 to 1,344,110
_1190
Pf1N1B4_1191 - hypothetical protein, at 1,344,240 to 1,344,521
_1191
Pf1N1B4_1192 - hypothetical protein, at 1,344,920 to 1,345,105
_1192
Position (kb)
1344
1345 Strain fitness (log2 ratio)
-2
-1
0
1 at 1343.412 kb on + strand, within Pf1N1B4_1190 at 1343.412 kb on + strand, within Pf1N1B4_1190 at 1343.412 kb on + strand, within Pf1N1B4_1190 at 1343.412 kb on + strand, within Pf1N1B4_1190 at 1343.413 kb on - strand, within Pf1N1B4_1190 at 1343.413 kb on - strand, within Pf1N1B4_1190 at 1343.459 kb on + strand, within Pf1N1B4_1190 at 1343.460 kb on - strand, within Pf1N1B4_1190 at 1343.661 kb on + strand, within Pf1N1B4_1190 at 1343.661 kb on + strand, within Pf1N1B4_1190 at 1343.661 kb on + strand, within Pf1N1B4_1190 at 1343.661 kb on + strand, within Pf1N1B4_1190 at 1343.661 kb on + strand, within Pf1N1B4_1190 at 1343.662 kb on - strand, within Pf1N1B4_1190 at 1343.662 kb on - strand, within Pf1N1B4_1190 at 1343.662 kb on - strand, within Pf1N1B4_1190 at 1343.727 kb on + strand, within Pf1N1B4_1190 at 1343.727 kb on + strand, within Pf1N1B4_1190 at 1343.727 kb on + strand, within Pf1N1B4_1190 at 1343.727 kb on + strand, within Pf1N1B4_1190 at 1343.727 kb on + strand, within Pf1N1B4_1190 at 1343.728 kb on - strand, within Pf1N1B4_1190 at 1343.728 kb on - strand, within Pf1N1B4_1190 at 1343.728 kb on - strand, within Pf1N1B4_1190 at 1343.728 kb on - strand, within Pf1N1B4_1190 at 1343.873 kb on + strand at 1343.874 kb on - strand at 1344.058 kb on - strand at 1344.072 kb on + strand at 1344.072 kb on + strand at 1344.072 kb on + strand at 1344.073 kb on - strand at 1344.073 kb on - strand at 1344.073 kb on - strand at 1344.118 kb on + strand at 1344.119 kb on - strand at 1344.254 kb on - strand at 1344.259 kb on + strand at 1344.259 kb on + strand at 1344.260 kb on - strand at 1344.420 kb on + strand, within Pf1N1B4_1191 at 1344.420 kb on + strand, within Pf1N1B4_1191 at 1344.421 kb on - strand, within Pf1N1B4_1191 at 1344.421 kb on - strand, within Pf1N1B4_1191 at 1344.490 kb on + strand at 1344.490 kb on + strand, within Pf1N1B4_1191 at 1344.491 kb on - strand, within Pf1N1B4_1191 at 1344.513 kb on - strand at 1344.523 kb on - strand at 1344.565 kb on + strand at 1344.565 kb on + strand at 1344.566 kb on - strand at 1344.566 kb on - strand at 1344.566 kb on - strand at 1344.572 kb on + strand at 1344.573 kb on - strand at 1344.645 kb on + strand at 1344.646 kb on - strand at 1344.664 kb on + strand at 1344.665 kb on - strand at 1344.665 kb on - strand at 1344.826 kb on - strand at 1344.890 kb on + strand at 1344.891 kb on - strand at 1344.919 kb on - strand at 1345.258 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,343,412 + Pf1N1B4_1190 0.75 +0.2 1,343,412 + Pf1N1B4_1190 0.75 -0.8 1,343,412 + Pf1N1B4_1190 0.75 -0.9 1,343,412 + Pf1N1B4_1190 0.75 -1.4 1,343,413 - Pf1N1B4_1190 0.75 -1.1 1,343,413 - Pf1N1B4_1190 0.75 -0.4 1,343,459 + Pf1N1B4_1190 0.77 +1.2 1,343,460 - Pf1N1B4_1190 0.77 +1.4 1,343,661 + Pf1N1B4_1190 0.84 +0.4 1,343,661 + Pf1N1B4_1190 0.84 +1.0 1,343,661 + Pf1N1B4_1190 0.84 +0.6 1,343,661 + Pf1N1B4_1190 0.84 +0.6 1,343,661 + Pf1N1B4_1190 0.84 -1.2 1,343,662 - Pf1N1B4_1190 0.84 +0.8 1,343,662 - Pf1N1B4_1190 0.84 -0.8 1,343,662 - Pf1N1B4_1190 0.84 -2.4 1,343,727 + Pf1N1B4_1190 0.86 +0.8 1,343,727 + Pf1N1B4_1190 0.86 +0.6 1,343,727 + Pf1N1B4_1190 0.86 -0.0 1,343,727 + Pf1N1B4_1190 0.86 +1.2 1,343,727 + Pf1N1B4_1190 0.86 +0.3 1,343,728 - Pf1N1B4_1190 0.86 +1.6 1,343,728 - Pf1N1B4_1190 0.86 -0.4 1,343,728 - Pf1N1B4_1190 0.86 +0.0 1,343,728 - Pf1N1B4_1190 0.86 +0.2 1,343,873 + -2.1 1,343,874 - -0.4 1,344,058 - -1.0 1,344,072 + -1.4 1,344,072 + +0.6 1,344,072 + +0.1 1,344,073 - -0.4 1,344,073 - -0.4 1,344,073 - -0.1 1,344,118 + +0.2 1,344,119 - +0.3 1,344,254 - -0.8 1,344,259 + -1.8 1,344,259 + +1.2 1,344,260 - -0.4 1,344,420 + Pf1N1B4_1191 0.64 +1.2 1,344,420 + Pf1N1B4_1191 0.64 -2.1 1,344,421 - Pf1N1B4_1191 0.64 -1.8 1,344,421 - Pf1N1B4_1191 0.64 +0.2 1,344,490 + +0.2 1,344,490 + Pf1N1B4_1191 0.89 -0.4 1,344,491 - Pf1N1B4_1191 0.89 -0.6 1,344,513 - -0.8 1,344,523 - +1.6 1,344,565 + -1.1 1,344,565 + +0.5 1,344,566 - +1.7 1,344,566 - -1.1 1,344,566 - -0.4 1,344,572 + -0.0 1,344,573 - -0.4 1,344,645 + -0.4 1,344,646 - +0.2 1,344,664 + -0.5 1,344,665 - +1.2 1,344,665 - +1.2 1,344,826 - -0.4 1,344,890 + -1.7 1,344,891 - +1.5 1,344,919 - -0.4 1,345,258 + +0.2
Or see this region's nucleotide sequence