Experiment: formate McAA thiamine dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03880 and MMJJ_RS03885 are separated by 129 nucleotides MMJJ_RS03885 and MMJJ_RS03890 are separated by 24 nucleotides
MMJJ_RS03880: MMJJ_RS03880 - TraB/GumN family protein, at 722,248 to 723,390
_RS03880
MMJJ_RS03885: MMJJ_RS03885 - tetratricopeptide repeat protein, at 723,520 to 724,554
_RS03885
MMJJ_RS03890: MMJJ_RS03890 - right-handed parallel beta-helix repeat-containing protein, at 724,579 to 727,356
_RS03890
Position (kb) 723
724
725 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 722.573 kb on - strand, within MMJJ_RS03880 at 722.574 kb on + strand, within MMJJ_RS03880 at 722.604 kb on - strand, within MMJJ_RS03880 at 722.614 kb on + strand, within MMJJ_RS03880 at 722.619 kb on - strand, within MMJJ_RS03880 at 722.619 kb on - strand, within MMJJ_RS03880 at 722.624 kb on - strand, within MMJJ_RS03880 at 722.638 kb on + strand, within MMJJ_RS03880 at 722.652 kb on - strand, within MMJJ_RS03880 at 722.705 kb on - strand, within MMJJ_RS03880 at 722.751 kb on + strand, within MMJJ_RS03880 at 722.763 kb on + strand, within MMJJ_RS03880 at 722.785 kb on - strand, within MMJJ_RS03880 at 722.812 kb on + strand, within MMJJ_RS03880 at 722.812 kb on + strand, within MMJJ_RS03880 at 722.812 kb on + strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.815 kb on - strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.816 kb on + strand, within MMJJ_RS03880 at 722.817 kb on - strand, within MMJJ_RS03880 at 722.818 kb on + strand, within MMJJ_RS03880 at 722.818 kb on + strand, within MMJJ_RS03880 at 722.870 kb on - strand, within MMJJ_RS03880 at 722.870 kb on - strand, within MMJJ_RS03880 at 722.871 kb on + strand, within MMJJ_RS03880 at 722.871 kb on + strand, within MMJJ_RS03880 at 722.871 kb on + strand, within MMJJ_RS03880 at 722.977 kb on + strand, within MMJJ_RS03880 at 722.986 kb on + strand, within MMJJ_RS03880 at 723.006 kb on + strand, within MMJJ_RS03880 at 723.006 kb on + strand, within MMJJ_RS03880 at 723.011 kb on - strand, within MMJJ_RS03880 at 723.017 kb on - strand, within MMJJ_RS03880 at 723.018 kb on + strand, within MMJJ_RS03880 at 723.022 kb on - strand, within MMJJ_RS03880 at 723.060 kb on + strand, within MMJJ_RS03880 at 723.069 kb on - strand, within MMJJ_RS03880 at 723.088 kb on + strand, within MMJJ_RS03880 at 723.089 kb on - strand, within MMJJ_RS03880 at 723.222 kb on + strand, within MMJJ_RS03880 at 723.229 kb on + strand, within MMJJ_RS03880 at 723.368 kb on + strand at 723.386 kb on - strand at 723.386 kb on - strand at 723.388 kb on - strand at 723.423 kb on + strand at 723.441 kb on + strand at 723.454 kb on - strand at 723.455 kb on + strand at 723.473 kb on + strand at 723.474 kb on - strand at 723.475 kb on + strand at 723.475 kb on + strand at 723.476 kb on - strand at 723.476 kb on - strand at 723.477 kb on + strand at 723.477 kb on + strand at 723.576 kb on - strand at 723.601 kb on - strand at 723.603 kb on - strand at 723.604 kb on + strand at 723.625 kb on - strand, within MMJJ_RS03885 at 723.641 kb on + strand, within MMJJ_RS03885 at 723.641 kb on + strand, within MMJJ_RS03885 at 723.641 kb on + strand, within MMJJ_RS03885 at 723.661 kb on - strand, within MMJJ_RS03885 at 723.663 kb on - strand, within MMJJ_RS03885 at 723.663 kb on - strand, within MMJJ_RS03885 at 723.663 kb on - strand, within MMJJ_RS03885 at 723.663 kb on - strand, within MMJJ_RS03885 at 723.663 kb on - strand, within MMJJ_RS03885 at 723.766 kb on + strand, within MMJJ_RS03885 at 723.766 kb on + strand, within MMJJ_RS03885 at 723.808 kb on + strand, within MMJJ_RS03885 at 723.924 kb on - strand, within MMJJ_RS03885 at 723.924 kb on - strand, within MMJJ_RS03885 at 723.924 kb on - strand, within MMJJ_RS03885 at 723.930 kb on + strand, within MMJJ_RS03885 at 723.933 kb on - strand, within MMJJ_RS03885 at 723.934 kb on + strand, within MMJJ_RS03885 at 723.946 kb on - strand, within MMJJ_RS03885 at 723.958 kb on + strand, within MMJJ_RS03885 at 724.086 kb on + strand, within MMJJ_RS03885 at 724.163 kb on - strand, within MMJJ_RS03885 at 724.164 kb on + strand, within MMJJ_RS03885 at 724.174 kb on + strand, within MMJJ_RS03885 at 724.174 kb on + strand, within MMJJ_RS03885 at 724.174 kb on + strand, within MMJJ_RS03885 at 724.176 kb on - strand, within MMJJ_RS03885 at 724.189 kb on + strand, within MMJJ_RS03885 at 724.216 kb on - strand, within MMJJ_RS03885 at 724.217 kb on + strand, within MMJJ_RS03885 at 724.219 kb on - strand, within MMJJ_RS03885 at 724.219 kb on - strand, within MMJJ_RS03885 at 724.219 kb on - strand, within MMJJ_RS03885 at 724.220 kb on + strand, within MMJJ_RS03885 at 724.220 kb on + strand, within MMJJ_RS03885 at 724.220 kb on + strand, within MMJJ_RS03885 at 724.242 kb on - strand, within MMJJ_RS03885 at 724.243 kb on + strand, within MMJJ_RS03885 at 724.265 kb on - strand, within MMJJ_RS03885 at 724.270 kb on - strand, within MMJJ_RS03885 at 724.270 kb on - strand, within MMJJ_RS03885 at 724.271 kb on + strand, within MMJJ_RS03885 at 724.292 kb on - strand, within MMJJ_RS03885 at 724.319 kb on - strand, within MMJJ_RS03885 at 724.324 kb on + strand, within MMJJ_RS03885 at 724.355 kb on + strand, within MMJJ_RS03885 at 724.356 kb on - strand, within MMJJ_RS03885 at 724.356 kb on - strand, within MMJJ_RS03885 at 724.357 kb on + strand, within MMJJ_RS03885 at 724.359 kb on - strand, within MMJJ_RS03885 at 724.360 kb on + strand, within MMJJ_RS03885 at 724.410 kb on + strand, within MMJJ_RS03885 at 724.438 kb on - strand, within MMJJ_RS03885 at 724.438 kb on - strand, within MMJJ_RS03885 at 724.438 kb on - strand, within MMJJ_RS03885 at 724.530 kb on + strand at 724.534 kb on + strand at 724.534 kb on + strand at 724.538 kb on - strand at 724.614 kb on - strand at 724.614 kb on - strand at 724.683 kb on - strand at 725.014 kb on + strand, within MMJJ_RS03890 at 725.110 kb on + strand, within MMJJ_RS03890 at 725.293 kb on + strand, within MMJJ_RS03890 at 725.293 kb on + strand, within MMJJ_RS03890 at 725.295 kb on + strand, within MMJJ_RS03890 at 725.421 kb on + strand, within MMJJ_RS03890 at 725.421 kb on + strand, within MMJJ_RS03890 at 725.423 kb on - strand, within MMJJ_RS03890 at 725.424 kb on + strand, within MMJJ_RS03890 at 725.452 kb on - strand, within MMJJ_RS03890 at 725.470 kb on - strand, within MMJJ_RS03890 at 725.485 kb on - strand, within MMJJ_RS03890 at 725.486 kb on + strand, within MMJJ_RS03890
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA thiamine dropout remove 722,573 - MMJJ_RS03880 0.28 -0.5 722,574 + MMJJ_RS03880 0.29 -0.1 722,604 - MMJJ_RS03880 0.31 +0.6 722,614 + MMJJ_RS03880 0.32 +0.9 722,619 - MMJJ_RS03880 0.32 -0.2 722,619 - MMJJ_RS03880 0.32 -0.5 722,624 - MMJJ_RS03880 0.33 -1.6 722,638 + MMJJ_RS03880 0.34 -2.3 722,652 - MMJJ_RS03880 0.35 -0.6 722,705 - MMJJ_RS03880 0.40 -1.3 722,751 + MMJJ_RS03880 0.44 -2.2 722,763 + MMJJ_RS03880 0.45 -0.5 722,785 - MMJJ_RS03880 0.47 -1.9 722,812 + MMJJ_RS03880 0.49 -0.7 722,812 + MMJJ_RS03880 0.49 -1.6 722,812 + MMJJ_RS03880 0.49 +0.1 722,815 - MMJJ_RS03880 0.50 -1.2 722,815 - MMJJ_RS03880 0.50 -1.5 722,815 - MMJJ_RS03880 0.50 -0.4 722,815 - MMJJ_RS03880 0.50 -1.3 722,815 - MMJJ_RS03880 0.50 -4.1 722,815 - MMJJ_RS03880 0.50 -0.8 722,815 - MMJJ_RS03880 0.50 -1.3 722,815 - MMJJ_RS03880 0.50 -1.1 722,816 + MMJJ_RS03880 0.50 -1.3 722,816 + MMJJ_RS03880 0.50 -0.6 722,816 + MMJJ_RS03880 0.50 -0.6 722,816 + MMJJ_RS03880 0.50 -1.4 722,816 + MMJJ_RS03880 0.50 -0.4 722,816 + MMJJ_RS03880 0.50 -0.7 722,816 + MMJJ_RS03880 0.50 -2.9 722,816 + MMJJ_RS03880 0.50 -0.3 722,816 + MMJJ_RS03880 0.50 -1.4 722,816 + MMJJ_RS03880 0.50 -1.5 722,816 + MMJJ_RS03880 0.50 +0.5 722,816 + MMJJ_RS03880 0.50 -2.4 722,816 + MMJJ_RS03880 0.50 -2.1 722,816 + MMJJ_RS03880 0.50 -1.9 722,817 - MMJJ_RS03880 0.50 -3.1 722,818 + MMJJ_RS03880 0.50 -1.3 722,818 + MMJJ_RS03880 0.50 -1.0 722,870 - MMJJ_RS03880 0.54 -2.1 722,870 - MMJJ_RS03880 0.54 -0.4 722,871 + MMJJ_RS03880 0.55 -1.5 722,871 + MMJJ_RS03880 0.55 -1.5 722,871 + MMJJ_RS03880 0.55 -2.1 722,977 + MMJJ_RS03880 0.64 -0.7 722,986 + MMJJ_RS03880 0.65 -1.5 723,006 + MMJJ_RS03880 0.66 -2.1 723,006 + MMJJ_RS03880 0.66 -1.9 723,011 - MMJJ_RS03880 0.67 -0.9 723,017 - MMJJ_RS03880 0.67 -0.2 723,018 + MMJJ_RS03880 0.67 -1.8 723,022 - MMJJ_RS03880 0.68 -0.1 723,060 + MMJJ_RS03880 0.71 +1.0 723,069 - MMJJ_RS03880 0.72 -1.3 723,088 + MMJJ_RS03880 0.73 +0.0 723,089 - MMJJ_RS03880 0.74 +0.2 723,222 + MMJJ_RS03880 0.85 -0.2 723,229 + MMJJ_RS03880 0.86 +0.0 723,368 + -1.3 723,386 - -0.9 723,386 - -0.5 723,388 - -0.6 723,423 + -1.0 723,441 + +1.1 723,454 - +0.1 723,455 + -1.6 723,473 + -2.1 723,474 - -1.5 723,475 + +0.1 723,475 + +0.3 723,476 - -0.6 723,476 - -0.1 723,477 + -0.0 723,477 + +0.8 723,576 - -1.3 723,601 - -0.5 723,603 - +0.2 723,604 + +0.6 723,625 - MMJJ_RS03885 0.10 -1.4 723,641 + MMJJ_RS03885 0.12 -0.3 723,641 + MMJJ_RS03885 0.12 +0.3 723,641 + MMJJ_RS03885 0.12 +0.4 723,661 - MMJJ_RS03885 0.14 +0.3 723,663 - MMJJ_RS03885 0.14 -1.0 723,663 - MMJJ_RS03885 0.14 +1.1 723,663 - MMJJ_RS03885 0.14 +0.7 723,663 - MMJJ_RS03885 0.14 -0.4 723,663 - MMJJ_RS03885 0.14 -0.3 723,766 + MMJJ_RS03885 0.24 +0.8 723,766 + MMJJ_RS03885 0.24 -0.7 723,808 + MMJJ_RS03885 0.28 -0.4 723,924 - MMJJ_RS03885 0.39 -1.0 723,924 - MMJJ_RS03885 0.39 -0.5 723,924 - MMJJ_RS03885 0.39 +0.5 723,930 + MMJJ_RS03885 0.40 -0.7 723,933 - MMJJ_RS03885 0.40 -1.4 723,934 + MMJJ_RS03885 0.40 -0.3 723,946 - MMJJ_RS03885 0.41 -0.1 723,958 + MMJJ_RS03885 0.42 -0.1 724,086 + MMJJ_RS03885 0.55 +1.8 724,163 - MMJJ_RS03885 0.62 +0.0 724,164 + MMJJ_RS03885 0.62 -0.3 724,174 + MMJJ_RS03885 0.63 +0.9 724,174 + MMJJ_RS03885 0.63 +1.1 724,174 + MMJJ_RS03885 0.63 +0.8 724,176 - MMJJ_RS03885 0.63 -0.5 724,189 + MMJJ_RS03885 0.65 +1.3 724,216 - MMJJ_RS03885 0.67 -0.8 724,217 + MMJJ_RS03885 0.67 +0.1 724,219 - MMJJ_RS03885 0.68 -2.3 724,219 - MMJJ_RS03885 0.68 -0.8 724,219 - MMJJ_RS03885 0.68 +1.4 724,220 + MMJJ_RS03885 0.68 -0.5 724,220 + MMJJ_RS03885 0.68 -0.3 724,220 + MMJJ_RS03885 0.68 -1.1 724,242 - MMJJ_RS03885 0.70 +0.8 724,243 + MMJJ_RS03885 0.70 +0.3 724,265 - MMJJ_RS03885 0.72 -0.6 724,270 - MMJJ_RS03885 0.72 -0.5 724,270 - MMJJ_RS03885 0.72 -0.0 724,271 + MMJJ_RS03885 0.73 +0.6 724,292 - MMJJ_RS03885 0.75 +0.9 724,319 - MMJJ_RS03885 0.77 -0.4 724,324 + MMJJ_RS03885 0.78 -0.7 724,355 + MMJJ_RS03885 0.81 -0.0 724,356 - MMJJ_RS03885 0.81 -0.7 724,356 - MMJJ_RS03885 0.81 -0.7 724,357 + MMJJ_RS03885 0.81 -0.5 724,359 - MMJJ_RS03885 0.81 +0.6 724,360 + MMJJ_RS03885 0.81 +0.3 724,410 + MMJJ_RS03885 0.86 +0.5 724,438 - MMJJ_RS03885 0.89 -0.4 724,438 - MMJJ_RS03885 0.89 +0.6 724,438 - MMJJ_RS03885 0.89 -0.2 724,530 + +1.0 724,534 + +0.0 724,534 + +0.6 724,538 - +1.2 724,614 - -0.5 724,614 - -0.6 724,683 - -0.5 725,014 + MMJJ_RS03890 0.16 +1.5 725,110 + MMJJ_RS03890 0.19 -0.4 725,293 + MMJJ_RS03890 0.26 -0.6 725,293 + MMJJ_RS03890 0.26 +0.1 725,295 + MMJJ_RS03890 0.26 +0.8 725,421 + MMJJ_RS03890 0.30 +0.4 725,421 + MMJJ_RS03890 0.30 -1.0 725,423 - MMJJ_RS03890 0.30 +0.5 725,424 + MMJJ_RS03890 0.30 +0.1 725,452 - MMJJ_RS03890 0.31 +0.2 725,470 - MMJJ_RS03890 0.32 +0.7 725,485 - MMJJ_RS03890 0.33 +0.3 725,486 + MMJJ_RS03890 0.33 +0.2
Or see this region's nucleotide sequence