Experiment: formate McAA thiamine dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS00880 and MMJJ_RS00885 are separated by 13 nucleotides MMJJ_RS00885 and MMJJ_RS00890 are separated by 10 nucleotides MMJJ_RS00890 and MMJJ_RS00895 are separated by 21 nucleotides
MMJJ_RS00880: MMJJ_RS00880 - coenzyme F420 hydrogenase subunit alpha, at 168,813 to 170,045
_RS00880
MMJJ_RS00885: MMJJ_RS00885 - coenzyme F420-reducing hydrogenase, FrhD protein, at 170,059 to 170,559
_RS00885
MMJJ_RS00890: MMJJ_RS00890 - coenzyme F420 hydrogenase subunit gamma, at 170,570 to 171,298
_RS00890
MMJJ_RS00895: MMJJ_RS00895 - coenzyme F420 hydrogenase subunit beta, at 171,320 to 172,168
_RS00895
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 169.581 kb on - strand, within MMJJ_RS00880 at 169.581 kb on - strand, within MMJJ_RS00880 at 169.610 kb on - strand, within MMJJ_RS00880 at 169.611 kb on + strand, within MMJJ_RS00880 at 169.611 kb on + strand, within MMJJ_RS00880 at 169.640 kb on - strand, within MMJJ_RS00880 at 169.664 kb on + strand, within MMJJ_RS00880 at 169.664 kb on + strand, within MMJJ_RS00880 at 169.691 kb on + strand, within MMJJ_RS00880 at 169.691 kb on + strand, within MMJJ_RS00880 at 169.694 kb on + strand, within MMJJ_RS00880 at 169.729 kb on - strand, within MMJJ_RS00880 at 169.859 kb on - strand, within MMJJ_RS00880 at 169.868 kb on - strand, within MMJJ_RS00880 at 169.868 kb on - strand, within MMJJ_RS00880 at 169.916 kb on - strand, within MMJJ_RS00880 at 169.917 kb on + strand, within MMJJ_RS00880 at 169.917 kb on + strand, within MMJJ_RS00880 at 169.955 kb on + strand at 169.955 kb on + strand at 169.955 kb on + strand at 169.963 kb on + strand at 169.994 kb on + strand at 170.007 kb on - strand at 170.039 kb on + strand at 170.044 kb on + strand at 170.072 kb on - strand at 170.142 kb on + strand, within MMJJ_RS00885 at 170.148 kb on - strand, within MMJJ_RS00885 at 170.148 kb on - strand, within MMJJ_RS00885 at 170.149 kb on + strand, within MMJJ_RS00885 at 170.180 kb on - strand, within MMJJ_RS00885 at 170.180 kb on - strand at 170.181 kb on + strand, within MMJJ_RS00885 at 170.236 kb on + strand, within MMJJ_RS00885 at 170.237 kb on - strand, within MMJJ_RS00885 at 170.403 kb on + strand, within MMJJ_RS00885 at 170.418 kb on - strand, within MMJJ_RS00885 at 170.422 kb on - strand, within MMJJ_RS00885 at 170.566 kb on - strand at 170.587 kb on - strand at 170.590 kb on + strand at 170.654 kb on + strand, within MMJJ_RS00890 at 170.673 kb on - strand, within MMJJ_RS00890 at 170.768 kb on + strand, within MMJJ_RS00890 at 170.796 kb on - strand, within MMJJ_RS00890 at 170.826 kb on - strand, within MMJJ_RS00890 at 170.827 kb on + strand, within MMJJ_RS00890 at 170.857 kb on + strand, within MMJJ_RS00890 at 170.890 kb on - strand, within MMJJ_RS00890 at 170.893 kb on - strand, within MMJJ_RS00890 at 170.893 kb on - strand, within MMJJ_RS00890 at 170.958 kb on - strand, within MMJJ_RS00890 at 170.958 kb on - strand, within MMJJ_RS00890 at 170.959 kb on + strand, within MMJJ_RS00890 at 170.959 kb on + strand, within MMJJ_RS00890 at 170.968 kb on + strand, within MMJJ_RS00890 at 171.012 kb on - strand, within MMJJ_RS00890 at 171.022 kb on - strand, within MMJJ_RS00890 at 171.022 kb on - strand, within MMJJ_RS00890 at 171.022 kb on - strand, within MMJJ_RS00890 at 171.023 kb on + strand at 171.023 kb on + strand, within MMJJ_RS00890 at 171.054 kb on - strand, within MMJJ_RS00890 at 171.108 kb on - strand, within MMJJ_RS00890 at 171.122 kb on + strand, within MMJJ_RS00890 at 171.124 kb on + strand, within MMJJ_RS00890 at 171.210 kb on - strand, within MMJJ_RS00890 at 171.211 kb on + strand, within MMJJ_RS00890 at 171.211 kb on + strand, within MMJJ_RS00890 at 171.211 kb on + strand, within MMJJ_RS00890 at 171.211 kb on + strand, within MMJJ_RS00890 at 171.280 kb on + strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.300 kb on - strand at 171.320 kb on + strand at 171.338 kb on - strand at 171.340 kb on - strand at 171.340 kb on - strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.341 kb on + strand at 171.349 kb on - strand at 171.349 kb on - strand at 171.349 kb on - strand at 171.350 kb on + strand at 171.350 kb on + strand at 171.350 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.352 kb on + strand at 171.354 kb on + strand at 171.371 kb on + strand at 171.378 kb on - strand at 171.419 kb on - strand, within MMJJ_RS00895 at 171.419 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.425 kb on - strand, within MMJJ_RS00895 at 171.426 kb on + strand, within MMJJ_RS00895 at 171.447 kb on - strand, within MMJJ_RS00895 at 171.485 kb on + strand, within MMJJ_RS00895 at 171.541 kb on - strand, within MMJJ_RS00895 at 171.542 kb on + strand, within MMJJ_RS00895 at 171.545 kb on - strand, within MMJJ_RS00895 at 171.547 kb on - strand, within MMJJ_RS00895 at 171.548 kb on + strand, within MMJJ_RS00895 at 171.564 kb on - strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.565 kb on + strand, within MMJJ_RS00895 at 171.574 kb on + strand, within MMJJ_RS00895 at 171.586 kb on + strand, within MMJJ_RS00895 at 171.646 kb on - strand, within MMJJ_RS00895 at 171.647 kb on + strand, within MMJJ_RS00895 at 171.654 kb on - strand, within MMJJ_RS00895 at 171.677 kb on + strand, within MMJJ_RS00895 at 171.682 kb on - strand, within MMJJ_RS00895 at 171.682 kb on - strand, within MMJJ_RS00895 at 171.683 kb on + strand, within MMJJ_RS00895 at 171.714 kb on - strand, within MMJJ_RS00895 at 171.760 kb on + strand, within MMJJ_RS00895 at 171.849 kb on - strand, within MMJJ_RS00895 at 171.850 kb on + strand, within MMJJ_RS00895 at 171.850 kb on + strand, within MMJJ_RS00895 at 171.881 kb on - strand, within MMJJ_RS00895 at 171.881 kb on - strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.882 kb on + strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.903 kb on - strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.904 kb on + strand, within MMJJ_RS00895 at 171.907 kb on - strand, within MMJJ_RS00895 at 171.907 kb on - strand, within MMJJ_RS00895 at 171.908 kb on + strand, within MMJJ_RS00895 at 171.908 kb on + strand, within MMJJ_RS00895 at 171.914 kb on - strand, within MMJJ_RS00895 at 171.914 kb on - strand, within MMJJ_RS00895 at 171.915 kb on + strand, within MMJJ_RS00895 at 171.915 kb on + strand, within MMJJ_RS00895 at 171.934 kb on - strand, within MMJJ_RS00895 at 171.935 kb on + strand, within MMJJ_RS00895 at 171.985 kb on - strand, within MMJJ_RS00895 at 171.986 kb on + strand, within MMJJ_RS00895 at 171.986 kb on + strand, within MMJJ_RS00895 at 172.008 kb on + strand, within MMJJ_RS00895 at 172.008 kb on + strand, within MMJJ_RS00895 at 172.062 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.080 kb on - strand, within MMJJ_RS00895 at 172.163 kb on - strand at 172.178 kb on - strand at 172.199 kb on - strand at 172.199 kb on - strand at 172.205 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.209 kb on - strand at 172.210 kb on + strand at 172.210 kb on + strand at 172.212 kb on - strand at 172.264 kb on - strand at 172.282 kb on - strand at 172.282 kb on - strand at 172.293 kb on - strand at 172.294 kb on + strand at 172.298 kb on + strand at 172.298 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA thiamine dropout remove 169,581 - MMJJ_RS00880 0.62 -0.2 169,581 - MMJJ_RS00880 0.62 +0.3 169,610 - MMJJ_RS00880 0.65 +0.8 169,611 + MMJJ_RS00880 0.65 -0.1 169,611 + MMJJ_RS00880 0.65 -2.4 169,640 - MMJJ_RS00880 0.67 +0.7 169,664 + MMJJ_RS00880 0.69 -1.2 169,664 + MMJJ_RS00880 0.69 +0.6 169,691 + MMJJ_RS00880 0.71 -0.5 169,691 + MMJJ_RS00880 0.71 +0.2 169,694 + MMJJ_RS00880 0.71 +0.9 169,729 - MMJJ_RS00880 0.74 +0.5 169,859 - MMJJ_RS00880 0.85 -1.9 169,868 - MMJJ_RS00880 0.86 +1.3 169,868 - MMJJ_RS00880 0.86 -1.2 169,916 - MMJJ_RS00880 0.89 -0.0 169,917 + MMJJ_RS00880 0.90 -2.2 169,917 + MMJJ_RS00880 0.90 +0.4 169,955 + +0.7 169,955 + -0.3 169,955 + +0.3 169,963 + -0.2 169,994 + -1.6 170,007 - -1.4 170,039 + -2.8 170,044 + +0.2 170,072 - -0.1 170,142 + MMJJ_RS00885 0.17 +0.0 170,148 - MMJJ_RS00885 0.18 +0.7 170,148 - MMJJ_RS00885 0.18 -1.8 170,149 + MMJJ_RS00885 0.18 +0.2 170,180 - MMJJ_RS00885 0.24 +1.2 170,180 - +0.8 170,181 + MMJJ_RS00885 0.24 -0.4 170,236 + MMJJ_RS00885 0.35 -2.0 170,237 - MMJJ_RS00885 0.36 -0.1 170,403 + MMJJ_RS00885 0.69 +1.1 170,418 - MMJJ_RS00885 0.72 -0.7 170,422 - MMJJ_RS00885 0.72 +0.0 170,566 - -0.9 170,587 - -1.0 170,590 + -1.3 170,654 + MMJJ_RS00890 0.12 -0.3 170,673 - MMJJ_RS00890 0.14 -2.7 170,768 + MMJJ_RS00890 0.27 +0.8 170,796 - MMJJ_RS00890 0.31 -0.0 170,826 - MMJJ_RS00890 0.35 +1.2 170,827 + MMJJ_RS00890 0.35 -0.1 170,857 + MMJJ_RS00890 0.39 +0.5 170,890 - MMJJ_RS00890 0.44 +2.1 170,893 - MMJJ_RS00890 0.44 +1.6 170,893 - MMJJ_RS00890 0.44 +0.5 170,958 - MMJJ_RS00890 0.53 -0.1 170,958 - MMJJ_RS00890 0.53 -0.2 170,959 + MMJJ_RS00890 0.53 +0.4 170,959 + MMJJ_RS00890 0.53 +0.5 170,968 + MMJJ_RS00890 0.55 +0.1 171,012 - MMJJ_RS00890 0.61 +1.0 171,022 - MMJJ_RS00890 0.62 -0.2 171,022 - MMJJ_RS00890 0.62 +0.8 171,022 - MMJJ_RS00890 0.62 +0.8 171,023 + -0.2 171,023 + MMJJ_RS00890 0.62 +0.8 171,054 - MMJJ_RS00890 0.66 -0.5 171,108 - MMJJ_RS00890 0.74 +0.7 171,122 + MMJJ_RS00890 0.76 -0.2 171,124 + MMJJ_RS00890 0.76 +0.2 171,210 - MMJJ_RS00890 0.88 +1.5 171,211 + MMJJ_RS00890 0.88 +0.1 171,211 + MMJJ_RS00890 0.88 +1.2 171,211 + MMJJ_RS00890 0.88 -0.1 171,211 + MMJJ_RS00890 0.88 +1.1 171,280 + +0.7 171,300 - -0.7 171,300 - +0.7 171,300 - +0.3 171,320 + -2.0 171,338 - -0.6 171,340 - +0.4 171,340 - -0.1 171,341 + -1.6 171,341 + -1.2 171,341 + -0.8 171,341 + +0.2 171,349 - -1.2 171,349 - -0.3 171,349 - -0.1 171,350 + +1.1 171,350 + +0.2 171,350 + +0.2 171,352 + +0.2 171,352 + +0.4 171,352 + +0.3 171,352 + -1.6 171,352 + +0.5 171,354 + +1.0 171,371 + -0.4 171,378 - +0.2 171,419 - MMJJ_RS00895 0.12 -1.3 171,419 - MMJJ_RS00895 0.12 -0.7 171,425 - MMJJ_RS00895 0.12 +0.5 171,425 - +0.8 171,425 - MMJJ_RS00895 0.12 -0.5 171,425 - MMJJ_RS00895 0.12 -1.6 171,425 - MMJJ_RS00895 0.12 -0.3 171,425 - MMJJ_RS00895 0.12 -0.5 171,426 + MMJJ_RS00895 0.12 +0.2 171,447 - MMJJ_RS00895 0.15 -0.3 171,485 + MMJJ_RS00895 0.19 +0.3 171,541 - MMJJ_RS00895 0.26 +0.3 171,542 + MMJJ_RS00895 0.26 -1.0 171,545 - MMJJ_RS00895 0.27 -0.1 171,547 - MMJJ_RS00895 0.27 +0.9 171,548 + MMJJ_RS00895 0.27 -1.3 171,564 - MMJJ_RS00895 0.29 -0.4 171,565 + MMJJ_RS00895 0.29 -0.9 171,565 + MMJJ_RS00895 0.29 +0.4 171,565 + MMJJ_RS00895 0.29 +0.5 171,574 + MMJJ_RS00895 0.30 +0.1 171,586 + MMJJ_RS00895 0.31 +0.6 171,646 - MMJJ_RS00895 0.38 +1.2 171,647 + MMJJ_RS00895 0.39 +0.0 171,654 - MMJJ_RS00895 0.39 +0.7 171,677 + MMJJ_RS00895 0.42 +0.7 171,682 - MMJJ_RS00895 0.43 -0.4 171,682 - MMJJ_RS00895 0.43 +1.7 171,683 + MMJJ_RS00895 0.43 +0.4 171,714 - MMJJ_RS00895 0.46 -1.0 171,760 + MMJJ_RS00895 0.52 +1.2 171,849 - MMJJ_RS00895 0.62 +0.8 171,850 + MMJJ_RS00895 0.62 -1.4 171,850 + MMJJ_RS00895 0.62 +0.5 171,881 - MMJJ_RS00895 0.66 +0.1 171,881 - MMJJ_RS00895 0.66 -0.8 171,882 + MMJJ_RS00895 0.66 -0.3 171,882 + MMJJ_RS00895 0.66 +0.0 171,882 + MMJJ_RS00895 0.66 +0.3 171,882 + MMJJ_RS00895 0.66 -0.1 171,903 - MMJJ_RS00895 0.69 -0.7 171,903 - MMJJ_RS00895 0.69 +1.2 171,903 - MMJJ_RS00895 0.69 -0.5 171,903 - MMJJ_RS00895 0.69 -1.0 171,903 - MMJJ_RS00895 0.69 -0.8 171,903 - MMJJ_RS00895 0.69 -0.2 171,903 - MMJJ_RS00895 0.69 +0.8 171,903 - MMJJ_RS00895 0.69 -1.2 171,903 - MMJJ_RS00895 0.69 -0.5 171,904 + MMJJ_RS00895 0.69 -1.0 171,904 + MMJJ_RS00895 0.69 -0.9 171,904 + MMJJ_RS00895 0.69 -1.9 171,904 + MMJJ_RS00895 0.69 -0.1 171,904 + MMJJ_RS00895 0.69 -0.0 171,904 + MMJJ_RS00895 0.69 -0.4 171,904 + MMJJ_RS00895 0.69 -0.3 171,907 - MMJJ_RS00895 0.69 -0.4 171,907 - MMJJ_RS00895 0.69 -0.8 171,908 + MMJJ_RS00895 0.69 +0.3 171,908 + MMJJ_RS00895 0.69 -0.0 171,914 - MMJJ_RS00895 0.70 +0.7 171,914 - MMJJ_RS00895 0.70 -0.9 171,915 + MMJJ_RS00895 0.70 +0.7 171,915 + MMJJ_RS00895 0.70 -0.3 171,934 - MMJJ_RS00895 0.72 +0.6 171,935 + MMJJ_RS00895 0.72 +2.2 171,985 - MMJJ_RS00895 0.78 +0.5 171,986 + MMJJ_RS00895 0.78 -0.3 171,986 + MMJJ_RS00895 0.78 +0.6 172,008 + MMJJ_RS00895 0.81 -0.2 172,008 + MMJJ_RS00895 0.81 +0.3 172,062 - MMJJ_RS00895 0.87 +0.3 172,080 - MMJJ_RS00895 0.90 +0.4 172,080 - MMJJ_RS00895 0.90 +0.4 172,080 - MMJJ_RS00895 0.90 +0.0 172,080 - MMJJ_RS00895 0.90 -0.9 172,080 - MMJJ_RS00895 0.90 -0.5 172,163 - +0.6 172,178 - -0.2 172,199 - +0.8 172,199 - +0.2 172,205 - +1.2 172,209 - +0.3 172,209 - +0.3 172,209 - +0.5 172,209 - -0.1 172,210 + +1.2 172,210 + +1.3 172,212 - -0.3 172,264 - -0.4 172,282 - +0.5 172,282 - +0.3 172,293 - -1.5 172,294 + -0.1 172,298 + +0.9 172,298 + +0.1
Or see this region's nucleotide sequence