Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00335

Experiment: formate McAA thiamine dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00330 and MMJJ_RS00335 are separated by 43 nucleotidesMMJJ_RS00335 and MMJJ_RS00340 are separated by 10 nucleotidesMMJJ_RS00340 and MMJJ_RS00345 are separated by 8 nucleotides MMJJ_RS00330: MMJJ_RS00330 - chemotaxis response regulator protein-glutamate methylesterase, at 64,115 to 65,212 _RS00330 MMJJ_RS00335: MMJJ_RS00335 - chemotaxis protein CheW, at 65,256 to 65,699 _RS00335 MMJJ_RS00340: MMJJ_RS00340 - tRNA (pseudouridine(54)-N(1))-methyltransferase TrmY, at 65,710 to 66,306 _RS00340 MMJJ_RS00345: MMJJ_RS00345 - 4-hydroxy-tetrahydrodipicolinate reductase, at 66,315 to 67,127 _RS00345 Position (kb) 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1at 64.310 kb on + strand, within MMJJ_RS00330at 64.347 kb on - strand, within MMJJ_RS00330at 64.360 kb on + strand, within MMJJ_RS00330at 64.370 kb on - strand, within MMJJ_RS00330at 64.408 kb on - strand, within MMJJ_RS00330at 64.421 kb on - strand, within MMJJ_RS00330at 64.422 kb on + strand, within MMJJ_RS00330at 64.422 kb on + strand, within MMJJ_RS00330at 64.428 kb on - strand, within MMJJ_RS00330at 64.428 kb on - strand, within MMJJ_RS00330at 64.428 kb on - strand, within MMJJ_RS00330at 64.429 kb on + strand, within MMJJ_RS00330at 64.429 kb on + strand, within MMJJ_RS00330at 64.429 kb on + strand, within MMJJ_RS00330at 64.429 kb on + strand, within MMJJ_RS00330at 64.429 kb on + strand, within MMJJ_RS00330at 64.430 kb on - strand, within MMJJ_RS00330at 64.430 kb on - strand, within MMJJ_RS00330at 64.430 kb on - strand, within MMJJ_RS00330at 64.430 kb on - strand, within MMJJ_RS00330at 64.431 kb on + strand, within MMJJ_RS00330at 64.431 kb on + strand, within MMJJ_RS00330at 64.431 kb on + strand, within MMJJ_RS00330at 64.676 kb on - strand, within MMJJ_RS00330at 64.676 kb on - strand, within MMJJ_RS00330at 64.677 kb on + strand, within MMJJ_RS00330at 64.680 kb on + strand, within MMJJ_RS00330at 64.683 kb on + strand, within MMJJ_RS00330at 64.747 kb on - strand, within MMJJ_RS00330at 64.777 kb on - strand, within MMJJ_RS00330at 64.808 kb on - strand, within MMJJ_RS00330at 64.808 kb on - strand, within MMJJ_RS00330at 64.809 kb on + strand, within MMJJ_RS00330at 64.931 kb on - strand, within MMJJ_RS00330at 64.932 kb on + strand, within MMJJ_RS00330at 64.936 kb on - strand, within MMJJ_RS00330at 65.012 kb on + strand, within MMJJ_RS00330at 65.054 kb on + strand, within MMJJ_RS00330at 65.058 kb on + strand, within MMJJ_RS00330at 65.186 kb on - strandat 65.231 kb on - strandat 65.305 kb on + strand, within MMJJ_RS00335at 65.309 kb on - strand, within MMJJ_RS00335at 65.338 kb on - strand, within MMJJ_RS00335at 65.338 kb on - strand, within MMJJ_RS00335at 65.404 kb on + strand, within MMJJ_RS00335at 65.427 kb on - strand, within MMJJ_RS00335at 65.463 kb on - strand, within MMJJ_RS00335at 65.463 kb on - strand, within MMJJ_RS00335at 65.464 kb on + strand, within MMJJ_RS00335at 65.542 kb on + strand, within MMJJ_RS00335at 65.562 kb on + strand, within MMJJ_RS00335at 65.637 kb on - strand, within MMJJ_RS00335at 65.680 kb on + strandat 65.721 kb on - strandat 65.721 kb on - strandat 65.722 kb on + strandat 65.726 kb on + strandat 65.726 kb on + strandat 65.726 kb on + strandat 65.734 kb on + strandat 65.746 kb on - strandat 65.746 kb on - strandat 65.747 kb on + strandat 65.747 kb on + strandat 65.747 kb on + strandat 65.785 kb on - strand, within MMJJ_RS00340at 65.912 kb on + strand, within MMJJ_RS00340at 65.959 kb on + strand, within MMJJ_RS00340at 65.959 kb on + strand, within MMJJ_RS00340at 65.962 kb on + strand, within MMJJ_RS00340at 66.141 kb on - strand, within MMJJ_RS00340at 66.142 kb on + strand, within MMJJ_RS00340at 66.156 kb on - strand, within MMJJ_RS00340at 66.212 kb on + strand, within MMJJ_RS00340at 66.288 kb on - strandat 66.346 kb on - strandat 66.346 kb on - strandat 66.347 kb on + strandat 66.350 kb on - strandat 66.351 kb on + strandat 66.377 kb on - strandat 66.377 kb on - strandat 66.378 kb on + strandat 66.462 kb on - strand, within MMJJ_RS00345at 66.463 kb on + strand, within MMJJ_RS00345at 66.580 kb on + strand, within MMJJ_RS00345

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA thiamine dropout
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64,310 + MMJJ_RS00330 0.18 -0.6
64,347 - MMJJ_RS00330 0.21 +0.1
64,360 + MMJJ_RS00330 0.22 +0.3
64,370 - MMJJ_RS00330 0.23 +0.6
64,408 - MMJJ_RS00330 0.27 +0.2
64,421 - MMJJ_RS00330 0.28 -0.5
64,422 + MMJJ_RS00330 0.28 +1.0
64,422 + MMJJ_RS00330 0.28 +0.0
64,428 - MMJJ_RS00330 0.29 -1.4
64,428 - MMJJ_RS00330 0.29 -0.5
64,428 - MMJJ_RS00330 0.29 -0.3
64,429 + MMJJ_RS00330 0.29 -0.5
64,429 + MMJJ_RS00330 0.29 -0.7
64,429 + MMJJ_RS00330 0.29 +1.0
64,429 + MMJJ_RS00330 0.29 -1.0
64,429 + MMJJ_RS00330 0.29 -0.7
64,430 - MMJJ_RS00330 0.29 +0.3
64,430 - MMJJ_RS00330 0.29 -1.8
64,430 - MMJJ_RS00330 0.29 -0.2
64,430 - MMJJ_RS00330 0.29 -2.3
64,431 + MMJJ_RS00330 0.29 +1.4
64,431 + MMJJ_RS00330 0.29 +0.4
64,431 + MMJJ_RS00330 0.29 -1.0
64,676 - MMJJ_RS00330 0.51 -1.3
64,676 - MMJJ_RS00330 0.51 +0.9
64,677 + MMJJ_RS00330 0.51 -1.0
64,680 + MMJJ_RS00330 0.51 -1.7
64,683 + MMJJ_RS00330 0.52 +0.3
64,747 - MMJJ_RS00330 0.58 +0.8
64,777 - MMJJ_RS00330 0.60 -0.0
64,808 - MMJJ_RS00330 0.63 -0.4
64,808 - MMJJ_RS00330 0.63 +1.1
64,809 + MMJJ_RS00330 0.63 +1.0
64,931 - MMJJ_RS00330 0.74 -2.4
64,932 + MMJJ_RS00330 0.74 +0.2
64,936 - MMJJ_RS00330 0.75 +0.3
65,012 + MMJJ_RS00330 0.82 -0.6
65,054 + MMJJ_RS00330 0.86 -0.6
65,058 + MMJJ_RS00330 0.86 +0.2
65,186 - -1.4
65,231 - +0.9
65,305 + MMJJ_RS00335 0.11 -0.2
65,309 - MMJJ_RS00335 0.12 +0.4
65,338 - MMJJ_RS00335 0.18 -1.2
65,338 - MMJJ_RS00335 0.18 -0.1
65,404 + MMJJ_RS00335 0.33 -0.8
65,427 - MMJJ_RS00335 0.39 +0.2
65,463 - MMJJ_RS00335 0.47 +0.7
65,463 - MMJJ_RS00335 0.47 +1.0
65,464 + MMJJ_RS00335 0.47 +0.3
65,542 + MMJJ_RS00335 0.64 +1.3
65,562 + MMJJ_RS00335 0.69 +1.1
65,637 - MMJJ_RS00335 0.86 +0.6
65,680 + -1.4
65,721 - -0.1
65,721 - -0.1
65,722 + +0.7
65,726 + +0.5
65,726 + -0.6
65,726 + +0.3
65,734 + +0.2
65,746 - -0.7
65,746 - -1.1
65,747 + -1.9
65,747 + +0.6
65,747 + -2.0
65,785 - MMJJ_RS00340 0.13 +0.3
65,912 + MMJJ_RS00340 0.34 -0.1
65,959 + MMJJ_RS00340 0.42 -2.0
65,959 + MMJJ_RS00340 0.42 -0.9
65,962 + MMJJ_RS00340 0.42 -0.1
66,141 - MMJJ_RS00340 0.72 +0.2
66,142 + MMJJ_RS00340 0.72 -0.9
66,156 - MMJJ_RS00340 0.75 -0.5
66,212 + MMJJ_RS00340 0.84 -0.5
66,288 - -1.7
66,346 - -1.0
66,346 - -0.2
66,347 + -0.0
66,350 - -1.1
66,351 + +0.0
66,377 - -1.1
66,377 - -1.2
66,378 + -0.9
66,462 - MMJJ_RS00345 0.18 -0.6
66,463 + MMJJ_RS00345 0.18 -0.4
66,580 + MMJJ_RS00345 0.33 -3.3

Or see this region's nucleotide sequence