Experiment: PYE with Benzethonium chloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02923 and CCNA_02924 are separated by 371 nucleotides CCNA_02924 and CCNA_02925 are separated by 441 nucleotides
CCNA_02923: CCNA_02923 - TonB-dependent receptor, at 3,082,765 to 3,085,839
_02923
CCNA_02924: CCNA_02924 - hypothetical protein, at 3,086,211 to 3,086,489
_02924
CCNA_02925: CCNA_02925 - carbamoyl-phosphate synthase small chain, at 3,086,931 to 3,088,097
_02925
Position (kb)
3086
3087 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3085.235 kb on - strand, within CCNA_02923 at 3085.241 kb on + strand, within CCNA_02923 at 3085.250 kb on - strand, within CCNA_02923 at 3085.273 kb on - strand, within CCNA_02923 at 3085.275 kb on + strand, within CCNA_02923 at 3085.293 kb on + strand, within CCNA_02923 at 3085.357 kb on + strand, within CCNA_02923 at 3085.364 kb on + strand, within CCNA_02923 at 3085.467 kb on - strand, within CCNA_02923 at 3085.498 kb on + strand, within CCNA_02923 at 3085.612 kb on - strand at 3085.652 kb on + strand at 3085.654 kb on + strand at 3085.740 kb on - strand at 3085.741 kb on + strand at 3085.742 kb on + strand at 3085.742 kb on + strand at 3085.755 kb on + strand at 3085.763 kb on - strand at 3085.765 kb on + strand at 3085.787 kb on - strand at 3085.792 kb on + strand at 3085.807 kb on + strand at 3085.807 kb on + strand at 3085.807 kb on + strand at 3085.807 kb on + strand at 3085.815 kb on - strand at 3085.849 kb on - strand at 3085.860 kb on - strand at 3085.881 kb on + strand at 3085.889 kb on - strand at 3085.917 kb on + strand at 3086.085 kb on + strand at 3086.085 kb on + strand at 3086.093 kb on - strand at 3086.093 kb on - strand at 3086.153 kb on + strand at 3086.209 kb on + strand at 3086.209 kb on + strand at 3086.209 kb on + strand at 3086.209 kb on + strand at 3086.209 kb on + strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.217 kb on - strand at 3086.233 kb on + strand at 3086.250 kb on - strand, within CCNA_02924 at 3086.267 kb on + strand, within CCNA_02924 at 3086.328 kb on - strand, within CCNA_02924 at 3086.329 kb on + strand, within CCNA_02924 at 3086.359 kb on + strand, within CCNA_02924 at 3086.367 kb on - strand at 3086.392 kb on + strand, within CCNA_02924 at 3086.400 kb on + strand, within CCNA_02924 at 3086.413 kb on + strand, within CCNA_02924 at 3086.413 kb on - strand, within CCNA_02924 at 3086.418 kb on + strand, within CCNA_02924 at 3086.485 kb on + strand at 3086.485 kb on + strand at 3086.493 kb on - strand at 3086.500 kb on + strand at 3086.508 kb on - strand at 3086.513 kb on + strand at 3086.515 kb on + strand at 3086.521 kb on - strand at 3086.614 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.636 kb on + strand at 3086.637 kb on + strand at 3086.637 kb on + strand at 3086.637 kb on + strand at 3086.637 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.644 kb on - strand at 3086.651 kb on + strand at 3086.651 kb on - strand at 3086.651 kb on - strand at 3086.666 kb on - strand at 3086.667 kb on - strand at 3086.670 kb on + strand at 3086.670 kb on + strand at 3086.678 kb on - strand at 3086.689 kb on - strand at 3086.739 kb on + strand at 3086.747 kb on - strand at 3086.747 kb on - strand at 3086.747 kb on - strand at 3086.750 kb on + strand at 3086.761 kb on + strand at 3086.761 kb on + strand at 3086.761 kb on + strand at 3086.761 kb on + strand at 3086.761 kb on + strand at 3086.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM remove 3,085,235 - CCNA_02923 0.80 -1.6 3,085,241 + CCNA_02923 0.81 -1.8 3,085,250 - CCNA_02923 0.81 -2.4 3,085,273 - CCNA_02923 0.82 +0.1 3,085,275 + CCNA_02923 0.82 -0.2 3,085,293 + CCNA_02923 0.82 +0.5 3,085,357 + CCNA_02923 0.84 -1.4 3,085,364 + CCNA_02923 0.85 +1.8 3,085,467 - CCNA_02923 0.88 -0.1 3,085,498 + CCNA_02923 0.89 +0.2 3,085,612 - +1.5 3,085,652 + +1.5 3,085,654 + -1.5 3,085,740 - -0.1 3,085,741 + -0.4 3,085,742 + +1.0 3,085,742 + -1.3 3,085,755 + -0.5 3,085,763 - +0.6 3,085,765 + +0.3 3,085,787 - -0.9 3,085,792 + -0.7 3,085,807 + +1.5 3,085,807 + -0.5 3,085,807 + -0.9 3,085,807 + +1.4 3,085,815 - -0.4 3,085,849 - -1.4 3,085,860 - -1.4 3,085,881 + +2.7 3,085,889 - -0.0 3,085,917 + +1.2 3,086,085 + -0.3 3,086,085 + -0.2 3,086,093 - -0.3 3,086,093 - -2.9 3,086,153 + -0.6 3,086,209 + +1.2 3,086,209 + +0.1 3,086,209 + -1.4 3,086,209 + -0.2 3,086,209 + -0.8 3,086,217 - +1.1 3,086,217 - +1.1 3,086,217 - +0.4 3,086,217 - +0.8 3,086,217 - +0.9 3,086,217 - -1.4 3,086,217 - -0.1 3,086,233 + -1.0 3,086,250 - CCNA_02924 0.14 +0.3 3,086,267 + CCNA_02924 0.20 +1.8 3,086,328 - CCNA_02924 0.42 -1.4 3,086,329 + CCNA_02924 0.42 -1.6 3,086,359 + CCNA_02924 0.53 -1.3 3,086,367 - +1.5 3,086,392 + CCNA_02924 0.65 -0.6 3,086,400 + CCNA_02924 0.68 -0.2 3,086,413 + CCNA_02924 0.72 -0.6 3,086,413 - CCNA_02924 0.72 +2.0 3,086,418 + CCNA_02924 0.74 -1.0 3,086,485 + +1.1 3,086,485 + +0.9 3,086,493 - -0.9 3,086,500 + -0.0 3,086,508 - -0.2 3,086,513 + -1.2 3,086,515 + -0.6 3,086,521 - -0.3 3,086,614 + -1.2 3,086,636 + +0.4 3,086,636 + +0.3 3,086,636 + +0.2 3,086,636 + +0.4 3,086,636 + +2.2 3,086,636 + +0.5 3,086,636 + +1.4 3,086,636 + +0.5 3,086,636 + +0.6 3,086,636 + -0.2 3,086,636 + -0.6 3,086,636 + -0.9 3,086,636 + -0.5 3,086,636 + -1.3 3,086,636 + -1.5 3,086,636 + +1.5 3,086,636 + +0.7 3,086,636 + +0.5 3,086,636 + +2.4 3,086,637 + +1.5 3,086,637 + +0.7 3,086,637 + +0.7 3,086,637 - -2.1 3,086,644 - +0.3 3,086,644 - +0.8 3,086,644 - -0.9 3,086,644 - +1.5 3,086,644 - +1.1 3,086,644 - -0.1 3,086,644 - -0.5 3,086,644 - -0.9 3,086,644 - +2.2 3,086,644 - -1.0 3,086,644 - -0.2 3,086,644 - -0.7 3,086,644 - -0.3 3,086,644 - +0.2 3,086,644 - -1.4 3,086,644 - -0.7 3,086,644 - +0.4 3,086,651 + +2.9 3,086,651 - +0.3 3,086,651 - -0.4 3,086,666 - -0.6 3,086,667 - +0.6 3,086,670 + +0.7 3,086,670 + +1.7 3,086,678 - -0.2 3,086,689 - -1.0 3,086,739 + +1.4 3,086,747 - +1.5 3,086,747 - -1.0 3,086,747 - -1.7 3,086,750 + +2.0 3,086,761 + +3.3 3,086,761 + +3.6 3,086,761 + +3.1 3,086,761 + +3.1 3,086,761 + +3.3 3,086,761 + +3.2
Or see this region's nucleotide sequence