Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02786

Experiment: PYE with Benzethonium chloride 0.001 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_02784 and CCNA_02785 are separated by 10 nucleotidesCCNA_02785 and CCNA_02786 are separated by 0 nucleotidesCCNA_02786 and CCNA_02787 are separated by 12 nucleotidesCCNA_02787 and CCNA_02788 are separated by 260 nucleotides CCNA_02784: CCNA_02784 - hypothetical protein, at 2,942,257 to 2,943,096 _02784 CCNA_02785: CCNA_02785 - TIR-like nucleotide binding protein, at 2,943,107 to 2,944,021 _02785 CCNA_02786: CCNA_02786 - guanylate cyclase, at 2,944,022 to 2,944,723 _02786 CCNA_02787: CCNA_02787 - hypothetical protein, at 2,944,736 to 2,945,245 _02787 CCNA_02788: CCNA_02788 - Xre-family transcriptional regulator, at 2,945,506 to 2,945,736 _02788 Position (kb) 2944 2945Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2943.039 kb on + strandat 2943.039 kb on + strandat 2943.045 kb on + strandat 2943.047 kb on - strandat 2943.053 kb on + strandat 2943.091 kb on + strandat 2943.091 kb on + strandat 2943.106 kb on - strandat 2943.114 kb on + strandat 2943.122 kb on - strandat 2943.122 kb on - strandat 2943.154 kb on - strandat 2943.158 kb on + strandat 2943.166 kb on - strandat 2943.175 kb on + strandat 2943.178 kb on - strandat 2943.189 kb on - strandat 2943.214 kb on + strand, within CCNA_02785at 2943.216 kb on + strand, within CCNA_02785at 2943.222 kb on - strand, within CCNA_02785at 2943.278 kb on + strand, within CCNA_02785at 2943.280 kb on + strand, within CCNA_02785at 2943.288 kb on - strand, within CCNA_02785at 2943.288 kb on - strand, within CCNA_02785at 2943.322 kb on + strand, within CCNA_02785at 2943.329 kb on + strand, within CCNA_02785at 2943.330 kb on - strand, within CCNA_02785at 2943.386 kb on + strand, within CCNA_02785at 2943.419 kb on + strand, within CCNA_02785at 2943.454 kb on - strand, within CCNA_02785at 2943.506 kb on + strand, within CCNA_02785at 2943.514 kb on - strand, within CCNA_02785at 2943.529 kb on + strand, within CCNA_02785at 2943.529 kb on + strand, within CCNA_02785at 2943.549 kb on - strand, within CCNA_02785at 2943.551 kb on - strand, within CCNA_02785at 2943.586 kb on + strand, within CCNA_02785at 2943.587 kb on + strand, within CCNA_02785at 2943.593 kb on + strand, within CCNA_02785at 2943.613 kb on + strand, within CCNA_02785at 2943.613 kb on + strand, within CCNA_02785at 2943.621 kb on - strand, within CCNA_02785at 2943.623 kb on + strand, within CCNA_02785at 2943.631 kb on - strand, within CCNA_02785at 2943.637 kb on - strand, within CCNA_02785at 2943.638 kb on - strand, within CCNA_02785at 2943.638 kb on - strand, within CCNA_02785at 2943.652 kb on + strand, within CCNA_02785at 2943.652 kb on + strand, within CCNA_02785at 2943.683 kb on + strand, within CCNA_02785at 2943.683 kb on + strand, within CCNA_02785at 2943.692 kb on + strand, within CCNA_02785at 2943.692 kb on + strand, within CCNA_02785at 2943.692 kb on + strand, within CCNA_02785at 2943.700 kb on - strand, within CCNA_02785at 2943.700 kb on - strand, within CCNA_02785at 2943.769 kb on - strand, within CCNA_02785at 2943.783 kb on + strand, within CCNA_02785at 2943.791 kb on - strand, within CCNA_02785at 2943.791 kb on - strand, within CCNA_02785at 2943.823 kb on + strand, within CCNA_02785at 2943.823 kb on + strand, within CCNA_02785at 2943.823 kb on + strand, within CCNA_02785at 2943.839 kb on + strand, within CCNA_02785at 2943.854 kb on + strand, within CCNA_02785at 2943.858 kb on + strand, within CCNA_02785at 2943.862 kb on - strand, within CCNA_02785at 2943.866 kb on - strand, within CCNA_02785at 2943.880 kb on + strand, within CCNA_02785at 2943.886 kb on + strand, within CCNA_02785at 2943.889 kb on + strand, within CCNA_02785at 2943.889 kb on - strand, within CCNA_02785at 2943.928 kb on + strand, within CCNA_02785at 2943.941 kb on - strandat 2943.948 kb on + strandat 2943.976 kb on - strandat 2943.980 kb on - strandat 2943.980 kb on - strandat 2943.980 kb on - strandat 2943.980 kb on - strandat 2943.985 kb on - strandat 2943.995 kb on + strandat 2944.005 kb on + strandat 2944.013 kb on - strandat 2944.016 kb on + strandat 2944.030 kb on + strandat 2944.039 kb on + strandat 2944.073 kb on + strandat 2944.091 kb on + strandat 2944.099 kb on - strand, within CCNA_02786at 2944.144 kb on + strand, within CCNA_02786at 2944.172 kb on + strand, within CCNA_02786at 2944.172 kb on + strand, within CCNA_02786at 2944.185 kb on + strand, within CCNA_02786at 2944.190 kb on - strand, within CCNA_02786at 2944.195 kb on + strand, within CCNA_02786at 2944.207 kb on + strand, within CCNA_02786at 2944.215 kb on - strand, within CCNA_02786at 2944.215 kb on - strand, within CCNA_02786at 2944.216 kb on - strand, within CCNA_02786at 2944.231 kb on + strand, within CCNA_02786at 2944.270 kb on + strand, within CCNA_02786at 2944.309 kb on + strand, within CCNA_02786at 2944.309 kb on + strand, within CCNA_02786at 2944.309 kb on + strand, within CCNA_02786at 2944.309 kb on + strand, within CCNA_02786at 2944.317 kb on - strand, within CCNA_02786at 2944.317 kb on - strand, within CCNA_02786at 2944.333 kb on + strand, within CCNA_02786at 2944.341 kb on - strandat 2944.341 kb on - strand, within CCNA_02786at 2944.361 kb on + strand, within CCNA_02786at 2944.372 kb on + strand, within CCNA_02786at 2944.372 kb on + strand, within CCNA_02786at 2944.380 kb on - strand, within CCNA_02786at 2944.382 kb on + strand, within CCNA_02786at 2944.382 kb on + strand, within CCNA_02786at 2944.382 kb on + strand, within CCNA_02786at 2944.388 kb on - strand, within CCNA_02786at 2944.390 kb on - strand, within CCNA_02786at 2944.391 kb on + strandat 2944.401 kb on - strand, within CCNA_02786at 2944.405 kb on + strand, within CCNA_02786at 2944.420 kb on - strand, within CCNA_02786at 2944.431 kb on + strand, within CCNA_02786at 2944.431 kb on - strand, within CCNA_02786at 2944.480 kb on + strandat 2944.513 kb on + strand, within CCNA_02786at 2944.519 kb on + strand, within CCNA_02786at 2944.521 kb on - strand, within CCNA_02786at 2944.521 kb on - strand, within CCNA_02786at 2944.526 kb on - strand, within CCNA_02786at 2944.527 kb on - strand, within CCNA_02786at 2944.537 kb on - strand, within CCNA_02786at 2944.558 kb on + strand, within CCNA_02786at 2944.600 kb on + strand, within CCNA_02786at 2944.603 kb on - strand, within CCNA_02786at 2944.603 kb on - strand, within CCNA_02786at 2944.603 kb on - strand, within CCNA_02786at 2944.617 kb on + strand, within CCNA_02786at 2944.641 kb on - strand, within CCNA_02786at 2944.644 kb on - strand, within CCNA_02786at 2944.703 kb on + strandat 2944.713 kb on + strandat 2944.713 kb on + strandat 2944.713 kb on + strandat 2944.721 kb on - strandat 2944.721 kb on - strandat 2944.721 kb on - strandat 2944.721 kb on - strandat 2944.749 kb on + strandat 2944.750 kb on + strandat 2944.751 kb on + strandat 2944.784 kb on + strandat 2944.816 kb on + strand, within CCNA_02787at 2944.825 kb on - strand, within CCNA_02787at 2944.847 kb on - strand, within CCNA_02787at 2944.847 kb on - strand, within CCNA_02787at 2944.847 kb on - strand, within CCNA_02787at 2944.849 kb on + strand, within CCNA_02787at 2944.870 kb on - strand, within CCNA_02787at 2944.893 kb on + strand, within CCNA_02787at 2944.893 kb on + strand, within CCNA_02787at 2944.895 kb on + strand, within CCNA_02787at 2944.895 kb on + strand, within CCNA_02787at 2944.901 kb on - strand, within CCNA_02787at 2944.910 kb on + strand, within CCNA_02787at 2944.910 kb on + strand, within CCNA_02787at 2944.910 kb on + strand, within CCNA_02787at 2944.951 kb on + strand, within CCNA_02787at 2944.988 kb on + strand, within CCNA_02787at 2944.993 kb on - strand, within CCNA_02787at 2945.024 kb on + strand, within CCNA_02787at 2945.027 kb on - strand, within CCNA_02787at 2945.095 kb on - strand, within CCNA_02787at 2945.095 kb on - strand, within CCNA_02787at 2945.128 kb on + strand, within CCNA_02787at 2945.136 kb on - strand, within CCNA_02787at 2945.136 kb on - strand, within CCNA_02787at 2945.139 kb on + strand, within CCNA_02787at 2945.139 kb on + strand, within CCNA_02787at 2945.141 kb on - strand, within CCNA_02787at 2945.161 kb on - strand, within CCNA_02787at 2945.182 kb on - strand, within CCNA_02787at 2945.187 kb on + strand, within CCNA_02787at 2945.197 kb on + strandat 2945.197 kb on + strandat 2945.197 kb on + strandat 2945.234 kb on + strandat 2945.238 kb on + strandat 2945.238 kb on + strandat 2945.238 kb on + strandat 2945.240 kb on - strandat 2945.246 kb on - strandat 2945.254 kb on + strandat 2945.285 kb on + strandat 2945.294 kb on + strandat 2945.296 kb on + strandat 2945.339 kb on - strandat 2945.352 kb on + strandat 2945.360 kb on - strandat 2945.362 kb on + strandat 2945.370 kb on - strandat 2945.370 kb on - strandat 2945.405 kb on + strandat 2945.405 kb on + strandat 2945.413 kb on - strandat 2945.532 kb on - strand, within CCNA_02788at 2945.537 kb on - strand, within CCNA_02788at 2945.537 kb on - strand, within CCNA_02788at 2945.560 kb on - strand, within CCNA_02788at 2945.574 kb on - strand, within CCNA_02788at 2945.628 kb on - strand, within CCNA_02788

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
remove
2,943,039 + -0.3
2,943,039 + +1.1
2,943,045 + -1.0
2,943,047 - -0.5
2,943,053 + -0.7
2,943,091 + -0.6
2,943,091 + -0.5
2,943,106 - +1.9
2,943,114 + -0.6
2,943,122 - +1.1
2,943,122 - -0.6
2,943,154 - +0.1
2,943,158 + -0.3
2,943,166 - -2.4
2,943,175 + +0.1
2,943,178 - -2.0
2,943,189 - -0.1
2,943,214 + CCNA_02785 0.12 -0.3
2,943,216 + CCNA_02785 0.12 +0.9
2,943,222 - CCNA_02785 0.13 -1.9
2,943,278 + CCNA_02785 0.19 +0.5
2,943,280 + CCNA_02785 0.19 +0.2
2,943,288 - CCNA_02785 0.20 -1.6
2,943,288 - CCNA_02785 0.20 -0.1
2,943,322 + CCNA_02785 0.23 +0.0
2,943,329 + CCNA_02785 0.24 +0.5
2,943,330 - CCNA_02785 0.24 +0.6
2,943,386 + CCNA_02785 0.30 +0.2
2,943,419 + CCNA_02785 0.34 +1.9
2,943,454 - CCNA_02785 0.38 -0.9
2,943,506 + CCNA_02785 0.44 -1.5
2,943,514 - CCNA_02785 0.44 +0.8
2,943,529 + CCNA_02785 0.46 +1.1
2,943,529 + CCNA_02785 0.46 -0.6
2,943,549 - CCNA_02785 0.48 +0.6
2,943,551 - CCNA_02785 0.49 -0.5
2,943,586 + CCNA_02785 0.52 -0.2
2,943,587 + CCNA_02785 0.52 +0.0
2,943,593 + CCNA_02785 0.53 -0.8
2,943,613 + CCNA_02785 0.55 -0.6
2,943,613 + CCNA_02785 0.55 +0.4
2,943,621 - CCNA_02785 0.56 +1.1
2,943,623 + CCNA_02785 0.56 +0.1
2,943,631 - CCNA_02785 0.57 +0.9
2,943,637 - CCNA_02785 0.58 +1.1
2,943,638 - CCNA_02785 0.58 +1.2
2,943,638 - CCNA_02785 0.58 -1.8
2,943,652 + CCNA_02785 0.60 +2.9
2,943,652 + CCNA_02785 0.60 +0.2
2,943,683 + CCNA_02785 0.63 -0.2
2,943,683 + CCNA_02785 0.63 +0.5
2,943,692 + CCNA_02785 0.64 +0.1
2,943,692 + CCNA_02785 0.64 -0.8
2,943,692 + CCNA_02785 0.64 +2.6
2,943,700 - CCNA_02785 0.65 +0.4
2,943,700 - CCNA_02785 0.65 +0.4
2,943,769 - CCNA_02785 0.72 -1.2
2,943,783 + CCNA_02785 0.74 +0.2
2,943,791 - CCNA_02785 0.75 +1.1
2,943,791 - CCNA_02785 0.75 +0.4
2,943,823 + CCNA_02785 0.78 +0.3
2,943,823 + CCNA_02785 0.78 -1.2
2,943,823 + CCNA_02785 0.78 +0.8
2,943,839 + CCNA_02785 0.80 +2.4
2,943,854 + CCNA_02785 0.82 -1.4
2,943,858 + CCNA_02785 0.82 -0.2
2,943,862 - CCNA_02785 0.83 -0.8
2,943,866 - CCNA_02785 0.83 -1.1
2,943,880 + CCNA_02785 0.84 -0.1
2,943,886 + CCNA_02785 0.85 +1.6
2,943,889 + CCNA_02785 0.85 -0.2
2,943,889 - CCNA_02785 0.85 -1.3
2,943,928 + CCNA_02785 0.90 -2.5
2,943,941 - +0.5
2,943,948 + -1.7
2,943,976 - -1.0
2,943,980 - +1.6
2,943,980 - -0.3
2,943,980 - -0.4
2,943,980 - -0.8
2,943,985 - +2.9
2,943,995 + +0.7
2,944,005 + +1.9
2,944,013 - +1.1
2,944,016 + -1.2
2,944,030 + -1.5
2,944,039 + -0.5
2,944,073 + -2.4
2,944,091 + +0.9
2,944,099 - CCNA_02786 0.11 +1.4
2,944,144 + CCNA_02786 0.17 -2.0
2,944,172 + CCNA_02786 0.21 -1.6
2,944,172 + CCNA_02786 0.21 -0.0
2,944,185 + CCNA_02786 0.23 -1.2
2,944,190 - CCNA_02786 0.24 +0.9
2,944,195 + CCNA_02786 0.25 +0.4
2,944,207 + CCNA_02786 0.26 -0.5
2,944,215 - CCNA_02786 0.27 +0.0
2,944,215 - CCNA_02786 0.27 +1.4
2,944,216 - CCNA_02786 0.28 +0.9
2,944,231 + CCNA_02786 0.30 +0.2
2,944,270 + CCNA_02786 0.35 -1.2
2,944,309 + CCNA_02786 0.41 +0.0
2,944,309 + CCNA_02786 0.41 -1.2
2,944,309 + CCNA_02786 0.41 +2.5
2,944,309 + CCNA_02786 0.41 +0.5
2,944,317 - CCNA_02786 0.42 +0.8
2,944,317 - CCNA_02786 0.42 -0.3
2,944,333 + CCNA_02786 0.44 -0.4
2,944,341 - +0.9
2,944,341 - CCNA_02786 0.45 -0.1
2,944,361 + CCNA_02786 0.48 +0.4
2,944,372 + CCNA_02786 0.50 -1.2
2,944,372 + CCNA_02786 0.50 -0.6
2,944,380 - CCNA_02786 0.51 +0.5
2,944,382 + CCNA_02786 0.51 -0.9
2,944,382 + CCNA_02786 0.51 +0.3
2,944,382 + CCNA_02786 0.51 +0.4
2,944,388 - CCNA_02786 0.52 +0.2
2,944,390 - CCNA_02786 0.52 +1.4
2,944,391 + +1.6
2,944,401 - CCNA_02786 0.54 -0.7
2,944,405 + CCNA_02786 0.55 -0.2
2,944,420 - CCNA_02786 0.57 +0.2
2,944,431 + CCNA_02786 0.58 -1.0
2,944,431 - CCNA_02786 0.58 +0.7
2,944,480 + +1.6
2,944,513 + CCNA_02786 0.70 -0.9
2,944,519 + CCNA_02786 0.71 -0.7
2,944,521 - CCNA_02786 0.71 +0.2
2,944,521 - CCNA_02786 0.71 +1.1
2,944,526 - CCNA_02786 0.72 +0.4
2,944,527 - CCNA_02786 0.72 -1.6
2,944,537 - CCNA_02786 0.73 -1.3
2,944,558 + CCNA_02786 0.76 -0.6
2,944,600 + CCNA_02786 0.82 -0.4
2,944,603 - CCNA_02786 0.83 +0.4
2,944,603 - CCNA_02786 0.83 -0.9
2,944,603 - CCNA_02786 0.83 -1.6
2,944,617 + CCNA_02786 0.85 +0.3
2,944,641 - CCNA_02786 0.88 -0.2
2,944,644 - CCNA_02786 0.89 -2.6
2,944,703 + -0.8
2,944,713 + -3.3
2,944,713 + -0.4
2,944,713 + -2.0
2,944,721 - -0.1
2,944,721 - +0.5
2,944,721 - +2.9
2,944,721 - -0.9
2,944,749 + +0.6
2,944,750 + +1.6
2,944,751 + -2.1
2,944,784 + +0.4
2,944,816 + CCNA_02787 0.16 -1.3
2,944,825 - CCNA_02787 0.17 -0.1
2,944,847 - CCNA_02787 0.22 +1.9
2,944,847 - CCNA_02787 0.22 +1.1
2,944,847 - CCNA_02787 0.22 -0.2
2,944,849 + CCNA_02787 0.22 -0.3
2,944,870 - CCNA_02787 0.26 -1.2
2,944,893 + CCNA_02787 0.31 +1.9
2,944,893 + CCNA_02787 0.31 -0.1
2,944,895 + CCNA_02787 0.31 +0.3
2,944,895 + CCNA_02787 0.31 -0.5
2,944,901 - CCNA_02787 0.32 +0.2
2,944,910 + CCNA_02787 0.34 -3.1
2,944,910 + CCNA_02787 0.34 +1.4
2,944,910 + CCNA_02787 0.34 -1.2
2,944,951 + CCNA_02787 0.42 -0.5
2,944,988 + CCNA_02787 0.49 -0.3
2,944,993 - CCNA_02787 0.50 -1.2
2,945,024 + CCNA_02787 0.56 -0.1
2,945,027 - CCNA_02787 0.57 -1.8
2,945,095 - CCNA_02787 0.70 -0.8
2,945,095 - CCNA_02787 0.70 -0.5
2,945,128 + CCNA_02787 0.77 +0.2
2,945,136 - CCNA_02787 0.78 -0.4
2,945,136 - CCNA_02787 0.78 -1.2
2,945,139 + CCNA_02787 0.79 -0.2
2,945,139 + CCNA_02787 0.79 -1.5
2,945,141 - CCNA_02787 0.79 +1.4
2,945,161 - CCNA_02787 0.83 +2.4
2,945,182 - CCNA_02787 0.87 +0.1
2,945,187 + CCNA_02787 0.88 +1.9
2,945,197 + -1.0
2,945,197 + -1.0
2,945,197 + -0.5
2,945,234 + +2.4
2,945,238 + -0.2
2,945,238 + +0.6
2,945,238 + +0.5
2,945,240 - +0.8
2,945,246 - -0.7
2,945,254 + +0.1
2,945,285 + +0.1
2,945,294 + -1.0
2,945,296 + +2.9
2,945,339 - -0.6
2,945,352 + +0.3
2,945,360 - -0.7
2,945,362 + +0.7
2,945,370 - -1.5
2,945,370 - +0.9
2,945,405 + -0.6
2,945,405 + -0.7
2,945,413 - +2.0
2,945,532 - CCNA_02788 0.11 +2.9
2,945,537 - CCNA_02788 0.13 +0.9
2,945,537 - CCNA_02788 0.13 +0.6
2,945,560 - CCNA_02788 0.23 +0.9
2,945,574 - CCNA_02788 0.29 -1.0
2,945,628 - CCNA_02788 0.53 +0.3

Or see this region's nucleotide sequence