Experiment: PYE with Benzethonium chloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02784 and CCNA_02785 are separated by 10 nucleotides CCNA_02785 and CCNA_02786 are separated by 0 nucleotides CCNA_02786 and CCNA_02787 are separated by 12 nucleotides CCNA_02787 and CCNA_02788 are separated by 260 nucleotides
CCNA_02784: CCNA_02784 - hypothetical protein, at 2,942,257 to 2,943,096
_02784
CCNA_02785: CCNA_02785 - TIR-like nucleotide binding protein, at 2,943,107 to 2,944,021
_02785
CCNA_02786: CCNA_02786 - guanylate cyclase, at 2,944,022 to 2,944,723
_02786
CCNA_02787: CCNA_02787 - hypothetical protein, at 2,944,736 to 2,945,245
_02787
CCNA_02788: CCNA_02788 - Xre-family transcriptional regulator, at 2,945,506 to 2,945,736
_02788
Position (kb)
2944
2945 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2943.039 kb on + strand at 2943.039 kb on + strand at 2943.045 kb on + strand at 2943.047 kb on - strand at 2943.053 kb on + strand at 2943.091 kb on + strand at 2943.091 kb on + strand at 2943.106 kb on - strand at 2943.114 kb on + strand at 2943.122 kb on - strand at 2943.122 kb on - strand at 2943.154 kb on - strand at 2943.158 kb on + strand at 2943.166 kb on - strand at 2943.175 kb on + strand at 2943.178 kb on - strand at 2943.189 kb on - strand at 2943.214 kb on + strand, within CCNA_02785 at 2943.216 kb on + strand, within CCNA_02785 at 2943.222 kb on - strand, within CCNA_02785 at 2943.278 kb on + strand, within CCNA_02785 at 2943.280 kb on + strand, within CCNA_02785 at 2943.288 kb on - strand, within CCNA_02785 at 2943.288 kb on - strand, within CCNA_02785 at 2943.322 kb on + strand, within CCNA_02785 at 2943.329 kb on + strand, within CCNA_02785 at 2943.330 kb on - strand, within CCNA_02785 at 2943.386 kb on + strand, within CCNA_02785 at 2943.419 kb on + strand, within CCNA_02785 at 2943.454 kb on - strand, within CCNA_02785 at 2943.506 kb on + strand, within CCNA_02785 at 2943.514 kb on - strand, within CCNA_02785 at 2943.529 kb on + strand, within CCNA_02785 at 2943.529 kb on + strand, within CCNA_02785 at 2943.549 kb on - strand, within CCNA_02785 at 2943.551 kb on - strand, within CCNA_02785 at 2943.586 kb on + strand, within CCNA_02785 at 2943.587 kb on + strand, within CCNA_02785 at 2943.593 kb on + strand, within CCNA_02785 at 2943.613 kb on + strand, within CCNA_02785 at 2943.613 kb on + strand, within CCNA_02785 at 2943.621 kb on - strand, within CCNA_02785 at 2943.623 kb on + strand, within CCNA_02785 at 2943.631 kb on - strand, within CCNA_02785 at 2943.637 kb on - strand, within CCNA_02785 at 2943.638 kb on - strand, within CCNA_02785 at 2943.638 kb on - strand, within CCNA_02785 at 2943.652 kb on + strand, within CCNA_02785 at 2943.652 kb on + strand, within CCNA_02785 at 2943.683 kb on + strand, within CCNA_02785 at 2943.683 kb on + strand, within CCNA_02785 at 2943.692 kb on + strand, within CCNA_02785 at 2943.692 kb on + strand, within CCNA_02785 at 2943.692 kb on + strand, within CCNA_02785 at 2943.700 kb on - strand, within CCNA_02785 at 2943.700 kb on - strand, within CCNA_02785 at 2943.769 kb on - strand, within CCNA_02785 at 2943.783 kb on + strand, within CCNA_02785 at 2943.791 kb on - strand, within CCNA_02785 at 2943.791 kb on - strand, within CCNA_02785 at 2943.823 kb on + strand, within CCNA_02785 at 2943.823 kb on + strand, within CCNA_02785 at 2943.823 kb on + strand, within CCNA_02785 at 2943.839 kb on + strand, within CCNA_02785 at 2943.854 kb on + strand, within CCNA_02785 at 2943.858 kb on + strand, within CCNA_02785 at 2943.862 kb on - strand, within CCNA_02785 at 2943.866 kb on - strand, within CCNA_02785 at 2943.880 kb on + strand, within CCNA_02785 at 2943.886 kb on + strand, within CCNA_02785 at 2943.889 kb on + strand, within CCNA_02785 at 2943.889 kb on - strand, within CCNA_02785 at 2943.928 kb on + strand, within CCNA_02785 at 2943.941 kb on - strand at 2943.948 kb on + strand at 2943.976 kb on - strand at 2943.980 kb on - strand at 2943.980 kb on - strand at 2943.980 kb on - strand at 2943.980 kb on - strand at 2943.985 kb on - strand at 2943.995 kb on + strand at 2944.005 kb on + strand at 2944.013 kb on - strand at 2944.016 kb on + strand at 2944.030 kb on + strand at 2944.039 kb on + strand at 2944.073 kb on + strand at 2944.091 kb on + strand at 2944.099 kb on - strand, within CCNA_02786 at 2944.144 kb on + strand, within CCNA_02786 at 2944.172 kb on + strand, within CCNA_02786 at 2944.172 kb on + strand, within CCNA_02786 at 2944.185 kb on + strand, within CCNA_02786 at 2944.190 kb on - strand, within CCNA_02786 at 2944.195 kb on + strand, within CCNA_02786 at 2944.207 kb on + strand, within CCNA_02786 at 2944.215 kb on - strand, within CCNA_02786 at 2944.215 kb on - strand, within CCNA_02786 at 2944.216 kb on - strand, within CCNA_02786 at 2944.231 kb on + strand, within CCNA_02786 at 2944.270 kb on + strand, within CCNA_02786 at 2944.309 kb on + strand, within CCNA_02786 at 2944.309 kb on + strand, within CCNA_02786 at 2944.309 kb on + strand, within CCNA_02786 at 2944.309 kb on + strand, within CCNA_02786 at 2944.317 kb on - strand, within CCNA_02786 at 2944.317 kb on - strand, within CCNA_02786 at 2944.333 kb on + strand, within CCNA_02786 at 2944.341 kb on - strand at 2944.341 kb on - strand, within CCNA_02786 at 2944.361 kb on + strand, within CCNA_02786 at 2944.372 kb on + strand, within CCNA_02786 at 2944.372 kb on + strand, within CCNA_02786 at 2944.380 kb on - strand, within CCNA_02786 at 2944.382 kb on + strand, within CCNA_02786 at 2944.382 kb on + strand, within CCNA_02786 at 2944.382 kb on + strand, within CCNA_02786 at 2944.388 kb on - strand, within CCNA_02786 at 2944.390 kb on - strand, within CCNA_02786 at 2944.391 kb on + strand at 2944.401 kb on - strand, within CCNA_02786 at 2944.405 kb on + strand, within CCNA_02786 at 2944.420 kb on - strand, within CCNA_02786 at 2944.431 kb on + strand, within CCNA_02786 at 2944.431 kb on - strand, within CCNA_02786 at 2944.480 kb on + strand at 2944.513 kb on + strand, within CCNA_02786 at 2944.519 kb on + strand, within CCNA_02786 at 2944.521 kb on - strand, within CCNA_02786 at 2944.521 kb on - strand, within CCNA_02786 at 2944.526 kb on - strand, within CCNA_02786 at 2944.527 kb on - strand, within CCNA_02786 at 2944.537 kb on - strand, within CCNA_02786 at 2944.558 kb on + strand, within CCNA_02786 at 2944.600 kb on + strand, within CCNA_02786 at 2944.603 kb on - strand, within CCNA_02786 at 2944.603 kb on - strand, within CCNA_02786 at 2944.603 kb on - strand, within CCNA_02786 at 2944.617 kb on + strand, within CCNA_02786 at 2944.641 kb on - strand, within CCNA_02786 at 2944.644 kb on - strand, within CCNA_02786 at 2944.703 kb on + strand at 2944.713 kb on + strand at 2944.713 kb on + strand at 2944.713 kb on + strand at 2944.721 kb on - strand at 2944.721 kb on - strand at 2944.721 kb on - strand at 2944.721 kb on - strand at 2944.749 kb on + strand at 2944.750 kb on + strand at 2944.751 kb on + strand at 2944.784 kb on + strand at 2944.816 kb on + strand, within CCNA_02787 at 2944.825 kb on - strand, within CCNA_02787 at 2944.847 kb on - strand, within CCNA_02787 at 2944.847 kb on - strand, within CCNA_02787 at 2944.847 kb on - strand, within CCNA_02787 at 2944.849 kb on + strand, within CCNA_02787 at 2944.870 kb on - strand, within CCNA_02787 at 2944.893 kb on + strand, within CCNA_02787 at 2944.893 kb on + strand, within CCNA_02787 at 2944.895 kb on + strand, within CCNA_02787 at 2944.895 kb on + strand, within CCNA_02787 at 2944.901 kb on - strand, within CCNA_02787 at 2944.910 kb on + strand, within CCNA_02787 at 2944.910 kb on + strand, within CCNA_02787 at 2944.910 kb on + strand, within CCNA_02787 at 2944.951 kb on + strand, within CCNA_02787 at 2944.988 kb on + strand, within CCNA_02787 at 2944.993 kb on - strand, within CCNA_02787 at 2945.024 kb on + strand, within CCNA_02787 at 2945.027 kb on - strand, within CCNA_02787 at 2945.095 kb on - strand, within CCNA_02787 at 2945.095 kb on - strand, within CCNA_02787 at 2945.128 kb on + strand, within CCNA_02787 at 2945.136 kb on - strand, within CCNA_02787 at 2945.136 kb on - strand, within CCNA_02787 at 2945.139 kb on + strand, within CCNA_02787 at 2945.139 kb on + strand, within CCNA_02787 at 2945.141 kb on - strand, within CCNA_02787 at 2945.161 kb on - strand, within CCNA_02787 at 2945.182 kb on - strand, within CCNA_02787 at 2945.187 kb on + strand, within CCNA_02787 at 2945.197 kb on + strand at 2945.197 kb on + strand at 2945.197 kb on + strand at 2945.234 kb on + strand at 2945.238 kb on + strand at 2945.238 kb on + strand at 2945.238 kb on + strand at 2945.240 kb on - strand at 2945.246 kb on - strand at 2945.254 kb on + strand at 2945.285 kb on + strand at 2945.294 kb on + strand at 2945.296 kb on + strand at 2945.339 kb on - strand at 2945.352 kb on + strand at 2945.360 kb on - strand at 2945.362 kb on + strand at 2945.370 kb on - strand at 2945.370 kb on - strand at 2945.405 kb on + strand at 2945.405 kb on + strand at 2945.413 kb on - strand at 2945.532 kb on - strand, within CCNA_02788 at 2945.537 kb on - strand, within CCNA_02788 at 2945.537 kb on - strand, within CCNA_02788 at 2945.560 kb on - strand, within CCNA_02788 at 2945.574 kb on - strand, within CCNA_02788 at 2945.628 kb on - strand, within CCNA_02788
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM remove 2,943,039 + -0.3 2,943,039 + +1.1 2,943,045 + -1.0 2,943,047 - -0.5 2,943,053 + -0.7 2,943,091 + -0.6 2,943,091 + -0.5 2,943,106 - +1.9 2,943,114 + -0.6 2,943,122 - +1.1 2,943,122 - -0.6 2,943,154 - +0.1 2,943,158 + -0.3 2,943,166 - -2.4 2,943,175 + +0.1 2,943,178 - -2.0 2,943,189 - -0.1 2,943,214 + CCNA_02785 0.12 -0.3 2,943,216 + CCNA_02785 0.12 +0.9 2,943,222 - CCNA_02785 0.13 -1.9 2,943,278 + CCNA_02785 0.19 +0.5 2,943,280 + CCNA_02785 0.19 +0.2 2,943,288 - CCNA_02785 0.20 -1.6 2,943,288 - CCNA_02785 0.20 -0.1 2,943,322 + CCNA_02785 0.23 +0.0 2,943,329 + CCNA_02785 0.24 +0.5 2,943,330 - CCNA_02785 0.24 +0.6 2,943,386 + CCNA_02785 0.30 +0.2 2,943,419 + CCNA_02785 0.34 +1.9 2,943,454 - CCNA_02785 0.38 -0.9 2,943,506 + CCNA_02785 0.44 -1.5 2,943,514 - CCNA_02785 0.44 +0.8 2,943,529 + CCNA_02785 0.46 +1.1 2,943,529 + CCNA_02785 0.46 -0.6 2,943,549 - CCNA_02785 0.48 +0.6 2,943,551 - CCNA_02785 0.49 -0.5 2,943,586 + CCNA_02785 0.52 -0.2 2,943,587 + CCNA_02785 0.52 +0.0 2,943,593 + CCNA_02785 0.53 -0.8 2,943,613 + CCNA_02785 0.55 -0.6 2,943,613 + CCNA_02785 0.55 +0.4 2,943,621 - CCNA_02785 0.56 +1.1 2,943,623 + CCNA_02785 0.56 +0.1 2,943,631 - CCNA_02785 0.57 +0.9 2,943,637 - CCNA_02785 0.58 +1.1 2,943,638 - CCNA_02785 0.58 +1.2 2,943,638 - CCNA_02785 0.58 -1.8 2,943,652 + CCNA_02785 0.60 +2.9 2,943,652 + CCNA_02785 0.60 +0.2 2,943,683 + CCNA_02785 0.63 -0.2 2,943,683 + CCNA_02785 0.63 +0.5 2,943,692 + CCNA_02785 0.64 +0.1 2,943,692 + CCNA_02785 0.64 -0.8 2,943,692 + CCNA_02785 0.64 +2.6 2,943,700 - CCNA_02785 0.65 +0.4 2,943,700 - CCNA_02785 0.65 +0.4 2,943,769 - CCNA_02785 0.72 -1.2 2,943,783 + CCNA_02785 0.74 +0.2 2,943,791 - CCNA_02785 0.75 +1.1 2,943,791 - CCNA_02785 0.75 +0.4 2,943,823 + CCNA_02785 0.78 +0.3 2,943,823 + CCNA_02785 0.78 -1.2 2,943,823 + CCNA_02785 0.78 +0.8 2,943,839 + CCNA_02785 0.80 +2.4 2,943,854 + CCNA_02785 0.82 -1.4 2,943,858 + CCNA_02785 0.82 -0.2 2,943,862 - CCNA_02785 0.83 -0.8 2,943,866 - CCNA_02785 0.83 -1.1 2,943,880 + CCNA_02785 0.84 -0.1 2,943,886 + CCNA_02785 0.85 +1.6 2,943,889 + CCNA_02785 0.85 -0.2 2,943,889 - CCNA_02785 0.85 -1.3 2,943,928 + CCNA_02785 0.90 -2.5 2,943,941 - +0.5 2,943,948 + -1.7 2,943,976 - -1.0 2,943,980 - +1.6 2,943,980 - -0.3 2,943,980 - -0.4 2,943,980 - -0.8 2,943,985 - +2.9 2,943,995 + +0.7 2,944,005 + +1.9 2,944,013 - +1.1 2,944,016 + -1.2 2,944,030 + -1.5 2,944,039 + -0.5 2,944,073 + -2.4 2,944,091 + +0.9 2,944,099 - CCNA_02786 0.11 +1.4 2,944,144 + CCNA_02786 0.17 -2.0 2,944,172 + CCNA_02786 0.21 -1.6 2,944,172 + CCNA_02786 0.21 -0.0 2,944,185 + CCNA_02786 0.23 -1.2 2,944,190 - CCNA_02786 0.24 +0.9 2,944,195 + CCNA_02786 0.25 +0.4 2,944,207 + CCNA_02786 0.26 -0.5 2,944,215 - CCNA_02786 0.27 +0.0 2,944,215 - CCNA_02786 0.27 +1.4 2,944,216 - CCNA_02786 0.28 +0.9 2,944,231 + CCNA_02786 0.30 +0.2 2,944,270 + CCNA_02786 0.35 -1.2 2,944,309 + CCNA_02786 0.41 +0.0 2,944,309 + CCNA_02786 0.41 -1.2 2,944,309 + CCNA_02786 0.41 +2.5 2,944,309 + CCNA_02786 0.41 +0.5 2,944,317 - CCNA_02786 0.42 +0.8 2,944,317 - CCNA_02786 0.42 -0.3 2,944,333 + CCNA_02786 0.44 -0.4 2,944,341 - +0.9 2,944,341 - CCNA_02786 0.45 -0.1 2,944,361 + CCNA_02786 0.48 +0.4 2,944,372 + CCNA_02786 0.50 -1.2 2,944,372 + CCNA_02786 0.50 -0.6 2,944,380 - CCNA_02786 0.51 +0.5 2,944,382 + CCNA_02786 0.51 -0.9 2,944,382 + CCNA_02786 0.51 +0.3 2,944,382 + CCNA_02786 0.51 +0.4 2,944,388 - CCNA_02786 0.52 +0.2 2,944,390 - CCNA_02786 0.52 +1.4 2,944,391 + +1.6 2,944,401 - CCNA_02786 0.54 -0.7 2,944,405 + CCNA_02786 0.55 -0.2 2,944,420 - CCNA_02786 0.57 +0.2 2,944,431 + CCNA_02786 0.58 -1.0 2,944,431 - CCNA_02786 0.58 +0.7 2,944,480 + +1.6 2,944,513 + CCNA_02786 0.70 -0.9 2,944,519 + CCNA_02786 0.71 -0.7 2,944,521 - CCNA_02786 0.71 +0.2 2,944,521 - CCNA_02786 0.71 +1.1 2,944,526 - CCNA_02786 0.72 +0.4 2,944,527 - CCNA_02786 0.72 -1.6 2,944,537 - CCNA_02786 0.73 -1.3 2,944,558 + CCNA_02786 0.76 -0.6 2,944,600 + CCNA_02786 0.82 -0.4 2,944,603 - CCNA_02786 0.83 +0.4 2,944,603 - CCNA_02786 0.83 -0.9 2,944,603 - CCNA_02786 0.83 -1.6 2,944,617 + CCNA_02786 0.85 +0.3 2,944,641 - CCNA_02786 0.88 -0.2 2,944,644 - CCNA_02786 0.89 -2.6 2,944,703 + -0.8 2,944,713 + -3.3 2,944,713 + -0.4 2,944,713 + -2.0 2,944,721 - -0.1 2,944,721 - +0.5 2,944,721 - +2.9 2,944,721 - -0.9 2,944,749 + +0.6 2,944,750 + +1.6 2,944,751 + -2.1 2,944,784 + +0.4 2,944,816 + CCNA_02787 0.16 -1.3 2,944,825 - CCNA_02787 0.17 -0.1 2,944,847 - CCNA_02787 0.22 +1.9 2,944,847 - CCNA_02787 0.22 +1.1 2,944,847 - CCNA_02787 0.22 -0.2 2,944,849 + CCNA_02787 0.22 -0.3 2,944,870 - CCNA_02787 0.26 -1.2 2,944,893 + CCNA_02787 0.31 +1.9 2,944,893 + CCNA_02787 0.31 -0.1 2,944,895 + CCNA_02787 0.31 +0.3 2,944,895 + CCNA_02787 0.31 -0.5 2,944,901 - CCNA_02787 0.32 +0.2 2,944,910 + CCNA_02787 0.34 -3.1 2,944,910 + CCNA_02787 0.34 +1.4 2,944,910 + CCNA_02787 0.34 -1.2 2,944,951 + CCNA_02787 0.42 -0.5 2,944,988 + CCNA_02787 0.49 -0.3 2,944,993 - CCNA_02787 0.50 -1.2 2,945,024 + CCNA_02787 0.56 -0.1 2,945,027 - CCNA_02787 0.57 -1.8 2,945,095 - CCNA_02787 0.70 -0.8 2,945,095 - CCNA_02787 0.70 -0.5 2,945,128 + CCNA_02787 0.77 +0.2 2,945,136 - CCNA_02787 0.78 -0.4 2,945,136 - CCNA_02787 0.78 -1.2 2,945,139 + CCNA_02787 0.79 -0.2 2,945,139 + CCNA_02787 0.79 -1.5 2,945,141 - CCNA_02787 0.79 +1.4 2,945,161 - CCNA_02787 0.83 +2.4 2,945,182 - CCNA_02787 0.87 +0.1 2,945,187 + CCNA_02787 0.88 +1.9 2,945,197 + -1.0 2,945,197 + -1.0 2,945,197 + -0.5 2,945,234 + +2.4 2,945,238 + -0.2 2,945,238 + +0.6 2,945,238 + +0.5 2,945,240 - +0.8 2,945,246 - -0.7 2,945,254 + +0.1 2,945,285 + +0.1 2,945,294 + -1.0 2,945,296 + +2.9 2,945,339 - -0.6 2,945,352 + +0.3 2,945,360 - -0.7 2,945,362 + +0.7 2,945,370 - -1.5 2,945,370 - +0.9 2,945,405 + -0.6 2,945,405 + -0.7 2,945,413 - +2.0 2,945,532 - CCNA_02788 0.11 +2.9 2,945,537 - CCNA_02788 0.13 +0.9 2,945,537 - CCNA_02788 0.13 +0.6 2,945,560 - CCNA_02788 0.23 +0.9 2,945,574 - CCNA_02788 0.29 -1.0 2,945,628 - CCNA_02788 0.53 +0.3
Or see this region's nucleotide sequence