Experiment: PYE with Benzethonium chloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02730 and CCNA_02731 overlap by 4 nucleotides CCNA_02731 and CCNA_02732 are separated by 115 nucleotides CCNA_02732 and CCNA_02733 are separated by 260 nucleotides
CCNA_02730: CCNA_02730 - glutathione S-transferase, at 2,893,514 to 2,894,161
_02730
CCNA_02731: CCNA_02731 - acetyltransferase, at 2,894,158 to 2,894,847
_02731
CCNA_02732: CCNA_02732 - hypothetical protein, at 2,894,963 to 2,895,169
_02732
CCNA_02733: CCNA_02733 - glutaminyl-peptide cyclotransferase, at 2,895,430 to 2,896,212
_02733
Position (kb)
2894
2895
2896 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2893.983 kb on + strand, within CCNA_02730 at 2893.991 kb on - strand, within CCNA_02730 at 2894.017 kb on + strand, within CCNA_02730 at 2894.025 kb on - strand, within CCNA_02730 at 2894.025 kb on - strand, within CCNA_02730 at 2894.025 kb on - strand, within CCNA_02730 at 2894.050 kb on + strand, within CCNA_02730 at 2894.085 kb on - strand, within CCNA_02730 at 2894.087 kb on + strand, within CCNA_02730 at 2894.180 kb on + strand at 2894.196 kb on - strand at 2894.252 kb on + strand, within CCNA_02731 at 2894.257 kb on + strand, within CCNA_02731 at 2894.260 kb on - strand, within CCNA_02731 at 2894.303 kb on + strand, within CCNA_02731 at 2894.314 kb on - strand, within CCNA_02731 at 2894.324 kb on + strand, within CCNA_02731 at 2894.324 kb on + strand, within CCNA_02731 at 2894.332 kb on - strand, within CCNA_02731 at 2894.332 kb on - strand, within CCNA_02731 at 2894.332 kb on - strand, within CCNA_02731 at 2894.363 kb on + strand, within CCNA_02731 at 2894.371 kb on - strand, within CCNA_02731 at 2894.373 kb on + strand, within CCNA_02731 at 2894.375 kb on + strand, within CCNA_02731 at 2894.381 kb on - strand, within CCNA_02731 at 2894.381 kb on - strand, within CCNA_02731 at 2894.383 kb on - strand, within CCNA_02731 at 2894.383 kb on - strand, within CCNA_02731 at 2894.430 kb on + strand, within CCNA_02731 at 2894.430 kb on + strand, within CCNA_02731 at 2894.438 kb on - strand, within CCNA_02731 at 2894.467 kb on + strand, within CCNA_02731 at 2894.491 kb on - strand, within CCNA_02731 at 2894.491 kb on - strand, within CCNA_02731 at 2894.528 kb on + strand, within CCNA_02731 at 2894.568 kb on + strand, within CCNA_02731 at 2894.613 kb on - strand, within CCNA_02731 at 2894.629 kb on - strand, within CCNA_02731 at 2894.680 kb on + strand, within CCNA_02731 at 2894.682 kb on + strand, within CCNA_02731 at 2894.729 kb on + strand, within CCNA_02731 at 2894.730 kb on - strand, within CCNA_02731 at 2894.746 kb on + strand, within CCNA_02731 at 2894.765 kb on - strand, within CCNA_02731 at 2894.816 kb on - strand at 2894.835 kb on + strand at 2894.843 kb on + strand at 2894.871 kb on - strand at 2894.902 kb on + strand at 2894.910 kb on - strand at 2894.974 kb on - strand at 2895.065 kb on - strand, within CCNA_02732 at 2895.077 kb on + strand, within CCNA_02732 at 2895.107 kb on - strand, within CCNA_02732 at 2895.107 kb on - strand, within CCNA_02732 at 2895.203 kb on + strand at 2895.263 kb on - strand at 2895.272 kb on - strand at 2895.272 kb on - strand at 2895.286 kb on - strand at 2895.288 kb on - strand at 2895.288 kb on - strand at 2895.297 kb on - strand at 2895.299 kb on + strand at 2895.307 kb on - strand at 2895.314 kb on + strand at 2895.322 kb on - strand at 2895.342 kb on + strand at 2895.367 kb on + strand at 2895.367 kb on + strand at 2895.367 kb on + strand at 2895.460 kb on - strand at 2895.462 kb on + strand at 2895.467 kb on + strand at 2895.470 kb on - strand at 2895.475 kb on - strand at 2895.475 kb on - strand at 2895.480 kb on - strand at 2895.523 kb on + strand, within CCNA_02733 at 2895.531 kb on - strand, within CCNA_02733 at 2895.534 kb on + strand, within CCNA_02733 at 2895.568 kb on - strand, within CCNA_02733 at 2895.577 kb on - strand, within CCNA_02733 at 2895.584 kb on + strand, within CCNA_02733 at 2895.594 kb on + strand, within CCNA_02733 at 2895.626 kb on + strand, within CCNA_02733 at 2895.639 kb on + strand, within CCNA_02733 at 2895.657 kb on - strand, within CCNA_02733 at 2895.670 kb on - strand, within CCNA_02733 at 2895.673 kb on + strand, within CCNA_02733 at 2895.673 kb on + strand, within CCNA_02733 at 2895.717 kb on + strand, within CCNA_02733 at 2895.739 kb on - strand, within CCNA_02733 at 2895.771 kb on - strand, within CCNA_02733 at 2895.803 kb on + strand, within CCNA_02733 at 2895.808 kb on + strand, within CCNA_02733 at 2895.808 kb on + strand, within CCNA_02733 at 2895.808 kb on + strand, within CCNA_02733 at 2895.813 kb on + strand, within CCNA_02733 at 2895.815 kb on + strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.816 kb on - strand, within CCNA_02733 at 2895.823 kb on - strand, within CCNA_02733 at 2895.823 kb on - strand, within CCNA_02733 at 2895.823 kb on - strand, within CCNA_02733 at 2895.841 kb on + strand, within CCNA_02733 at 2895.860 kb on - strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.893 kb on + strand, within CCNA_02733 at 2895.896 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.901 kb on - strand, within CCNA_02733 at 2895.906 kb on - strand, within CCNA_02733 at 2895.914 kb on - strand, within CCNA_02733 at 2896.021 kb on + strand, within CCNA_02733 at 2896.021 kb on + strand, within CCNA_02733 at 2896.021 kb on + strand, within CCNA_02733 at 2896.026 kb on + strand, within CCNA_02733 at 2896.029 kb on - strand, within CCNA_02733 at 2896.029 kb on - strand, within CCNA_02733 at 2896.042 kb on + strand, within CCNA_02733 at 2896.050 kb on - strand, within CCNA_02733 at 2896.073 kb on - strand, within CCNA_02733 at 2896.074 kb on - strand, within CCNA_02733 at 2896.080 kb on + strand, within CCNA_02733 at 2896.085 kb on - strand, within CCNA_02733 at 2896.097 kb on - strand, within CCNA_02733 at 2896.117 kb on - strand, within CCNA_02733
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM remove 2,893,983 + CCNA_02730 0.72 -2.4 2,893,991 - CCNA_02730 0.74 -0.6 2,894,017 + CCNA_02730 0.78 +1.1 2,894,025 - CCNA_02730 0.79 +0.1 2,894,025 - CCNA_02730 0.79 +0.4 2,894,025 - CCNA_02730 0.79 +0.3 2,894,050 + CCNA_02730 0.83 -0.9 2,894,085 - CCNA_02730 0.88 -0.1 2,894,087 + CCNA_02730 0.88 +0.6 2,894,180 + -0.6 2,894,196 - +1.0 2,894,252 + CCNA_02731 0.14 -0.7 2,894,257 + CCNA_02731 0.14 +1.0 2,894,260 - CCNA_02731 0.15 -1.0 2,894,303 + CCNA_02731 0.21 -1.0 2,894,314 - CCNA_02731 0.23 -0.5 2,894,324 + CCNA_02731 0.24 -1.5 2,894,324 + CCNA_02731 0.24 +0.6 2,894,332 - CCNA_02731 0.25 +0.1 2,894,332 - CCNA_02731 0.25 +1.4 2,894,332 - CCNA_02731 0.25 -0.6 2,894,363 + CCNA_02731 0.30 -1.1 2,894,371 - CCNA_02731 0.31 +0.8 2,894,373 + CCNA_02731 0.31 +1.8 2,894,375 + CCNA_02731 0.31 +1.5 2,894,381 - CCNA_02731 0.32 -0.1 2,894,381 - CCNA_02731 0.32 -0.0 2,894,383 - CCNA_02731 0.33 +0.6 2,894,383 - CCNA_02731 0.33 -1.9 2,894,430 + CCNA_02731 0.39 +0.1 2,894,430 + CCNA_02731 0.39 -1.2 2,894,438 - CCNA_02731 0.41 -0.4 2,894,467 + CCNA_02731 0.45 -1.3 2,894,491 - CCNA_02731 0.48 -0.4 2,894,491 - CCNA_02731 0.48 +0.8 2,894,528 + CCNA_02731 0.54 +1.1 2,894,568 + CCNA_02731 0.59 -1.2 2,894,613 - CCNA_02731 0.66 -1.1 2,894,629 - CCNA_02731 0.68 +1.3 2,894,680 + CCNA_02731 0.76 +0.3 2,894,682 + CCNA_02731 0.76 +1.7 2,894,729 + CCNA_02731 0.83 -0.4 2,894,730 - CCNA_02731 0.83 +0.9 2,894,746 + CCNA_02731 0.85 -0.0 2,894,765 - CCNA_02731 0.88 +0.7 2,894,816 - +1.1 2,894,835 + -0.1 2,894,843 + -0.2 2,894,871 - +1.6 2,894,902 + -1.1 2,894,910 - +2.1 2,894,974 - +3.6 2,895,065 - CCNA_02732 0.49 +3.2 2,895,077 + CCNA_02732 0.55 +0.4 2,895,107 - CCNA_02732 0.70 +3.4 2,895,107 - CCNA_02732 0.70 +3.3 2,895,203 + +0.9 2,895,263 - +0.8 2,895,272 - +0.4 2,895,272 - -0.6 2,895,286 - -0.1 2,895,288 - +1.6 2,895,288 - +1.8 2,895,297 - +0.3 2,895,299 + +0.6 2,895,307 - +0.7 2,895,314 + -1.4 2,895,322 - +0.8 2,895,342 + -0.7 2,895,367 + -0.3 2,895,367 + -0.5 2,895,367 + +0.6 2,895,460 - +2.0 2,895,462 + -0.8 2,895,467 + -0.6 2,895,470 - +0.1 2,895,475 - -0.7 2,895,475 - +0.4 2,895,480 - +0.6 2,895,523 + CCNA_02733 0.12 -1.9 2,895,531 - CCNA_02733 0.13 +0.3 2,895,534 + CCNA_02733 0.13 -2.4 2,895,568 - CCNA_02733 0.18 +1.1 2,895,577 - CCNA_02733 0.19 +0.5 2,895,584 + CCNA_02733 0.20 -0.4 2,895,594 + CCNA_02733 0.21 -1.9 2,895,626 + CCNA_02733 0.25 +0.8 2,895,639 + CCNA_02733 0.27 -1.4 2,895,657 - CCNA_02733 0.29 +2.1 2,895,670 - CCNA_02733 0.31 -0.0 2,895,673 + CCNA_02733 0.31 -1.2 2,895,673 + CCNA_02733 0.31 +1.2 2,895,717 + CCNA_02733 0.37 -1.4 2,895,739 - CCNA_02733 0.39 +1.2 2,895,771 - CCNA_02733 0.44 -0.3 2,895,803 + CCNA_02733 0.48 +1.7 2,895,808 + CCNA_02733 0.48 -0.8 2,895,808 + CCNA_02733 0.48 +0.6 2,895,808 + CCNA_02733 0.48 +0.2 2,895,813 + CCNA_02733 0.49 +1.2 2,895,815 + CCNA_02733 0.49 +1.7 2,895,816 - CCNA_02733 0.49 -0.1 2,895,816 - CCNA_02733 0.49 +0.6 2,895,816 - CCNA_02733 0.49 +0.3 2,895,816 - CCNA_02733 0.49 +0.5 2,895,816 - CCNA_02733 0.49 +0.2 2,895,816 - CCNA_02733 0.49 +0.7 2,895,823 - CCNA_02733 0.50 +1.3 2,895,823 - CCNA_02733 0.50 +1.0 2,895,823 - CCNA_02733 0.50 +1.6 2,895,841 + CCNA_02733 0.52 -0.9 2,895,860 - CCNA_02733 0.55 +1.2 2,895,893 + CCNA_02733 0.59 -0.1 2,895,893 + CCNA_02733 0.59 +0.1 2,895,893 + CCNA_02733 0.59 -1.6 2,895,893 + CCNA_02733 0.59 +0.7 2,895,893 + CCNA_02733 0.59 +0.2 2,895,893 + CCNA_02733 0.59 +0.6 2,895,893 + CCNA_02733 0.59 -0.6 2,895,893 + CCNA_02733 0.59 +1.8 2,895,893 + CCNA_02733 0.59 -2.1 2,895,893 + CCNA_02733 0.59 +2.4 2,895,893 + CCNA_02733 0.59 +0.8 2,895,896 - CCNA_02733 0.60 +0.2 2,895,901 - CCNA_02733 0.60 -0.2 2,895,901 - CCNA_02733 0.60 -0.1 2,895,901 - CCNA_02733 0.60 +1.8 2,895,901 - CCNA_02733 0.60 +0.4 2,895,901 - CCNA_02733 0.60 -0.9 2,895,901 - CCNA_02733 0.60 -0.2 2,895,901 - CCNA_02733 0.60 +1.1 2,895,901 - CCNA_02733 0.60 +0.4 2,895,901 - CCNA_02733 0.60 -0.1 2,895,901 - CCNA_02733 0.60 +1.6 2,895,901 - CCNA_02733 0.60 +1.2 2,895,906 - CCNA_02733 0.61 +1.5 2,895,914 - CCNA_02733 0.62 +1.2 2,896,021 + CCNA_02733 0.75 +1.8 2,896,021 + CCNA_02733 0.75 -0.5 2,896,021 + CCNA_02733 0.75 -1.6 2,896,026 + CCNA_02733 0.76 -1.1 2,896,029 - CCNA_02733 0.77 -0.6 2,896,029 - CCNA_02733 0.77 -2.0 2,896,042 + CCNA_02733 0.78 -0.3 2,896,050 - CCNA_02733 0.79 +1.2 2,896,073 - CCNA_02733 0.82 +1.4 2,896,074 - CCNA_02733 0.82 +0.0 2,896,080 + CCNA_02733 0.83 +0.1 2,896,085 - CCNA_02733 0.84 -1.0 2,896,097 - CCNA_02733 0.85 +1.4 2,896,117 - CCNA_02733 0.88 +0.4
Or see this region's nucleotide sequence