Experiment: PYE with Benzethonium chloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02182 and CCNA_02183 overlap by 20 nucleotides CCNA_02183 and CCNA_02184 overlap by 4 nucleotides CCNA_02184 and CCNA_03962 are separated by 254 nucleotides CCNA_03962 and CCNA_02185 are separated by 104 nucleotides
CCNA_02182: CCNA_02182 - phosphoserine phosphatase, at 2,333,403 to 2,334,281
_02182
CCNA_02183: CCNA_02183 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 2,334,262 to 2,335,152
_02183
CCNA_02184: CCNA_02184 - competence damage-inducible protein cinA, at 2,335,149 to 2,335,619
_02184
CCNA_03962: CCNA_03962 - hypothetical protein, at 2,335,874 to 2,335,921
_03962
CCNA_02185: CCNA_02185 - acetolactate synthase large subunit, at 2,336,026 to 2,337,831
_02185
Position (kb)
2335
2336 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2334.162 kb on + strand, within CCNA_02182 at 2334.162 kb on + strand, within CCNA_02182 at 2334.170 kb on - strand, within CCNA_02182 at 2334.191 kb on - strand, within CCNA_02182 at 2334.223 kb on + strand at 2334.270 kb on - strand at 2334.270 kb on - strand at 2335.134 kb on + strand at 2335.157 kb on + strand at 2335.176 kb on + strand at 2335.178 kb on + strand at 2335.178 kb on + strand at 2335.186 kb on - strand at 2335.186 kb on - strand at 2335.186 kb on - strand at 2335.186 kb on - strand at 2335.222 kb on - strand, within CCNA_02184 at 2335.242 kb on + strand, within CCNA_02184 at 2335.247 kb on + strand, within CCNA_02184 at 2335.285 kb on + strand, within CCNA_02184 at 2335.302 kb on + strand, within CCNA_02184 at 2335.322 kb on + strand at 2335.370 kb on + strand, within CCNA_02184 at 2335.377 kb on + strand, within CCNA_02184 at 2335.382 kb on + strand, within CCNA_02184 at 2335.402 kb on - strand, within CCNA_02184 at 2335.404 kb on - strand, within CCNA_02184 at 2335.413 kb on + strand, within CCNA_02184 at 2335.413 kb on + strand, within CCNA_02184 at 2335.426 kb on - strand, within CCNA_02184 at 2335.431 kb on + strand, within CCNA_02184 at 2335.431 kb on + strand, within CCNA_02184 at 2335.439 kb on - strand, within CCNA_02184 at 2335.440 kb on + strand, within CCNA_02184 at 2335.464 kb on + strand, within CCNA_02184 at 2335.477 kb on + strand, within CCNA_02184 at 2335.490 kb on - strand, within CCNA_02184 at 2335.547 kb on - strand, within CCNA_02184 at 2335.612 kb on + strand at 2335.613 kb on - strand at 2335.635 kb on - strand at 2335.657 kb on + strand at 2335.660 kb on - strand at 2335.665 kb on - strand at 2335.736 kb on + strand at 2335.737 kb on + strand at 2335.755 kb on - strand at 2335.758 kb on - strand at 2335.766 kb on - strand at 2335.767 kb on - strand at 2335.767 kb on - strand at 2335.959 kb on + strand at 2336.022 kb on + strand at 2336.041 kb on + strand at 2336.156 kb on + strand at 2336.184 kb on + strand at 2336.184 kb on + strand at 2336.192 kb on - strand at 2336.205 kb on + strand at 2336.227 kb on - strand, within CCNA_02185 at 2336.243 kb on + strand, within CCNA_02185 at 2336.245 kb on + strand, within CCNA_02185 at 2336.245 kb on + strand, within CCNA_02185 at 2336.251 kb on + strand, within CCNA_02185 at 2336.251 kb on + strand, within CCNA_02185 at 2336.251 kb on - strand, within CCNA_02185 at 2336.253 kb on - strand, within CCNA_02185 at 2336.273 kb on + strand, within CCNA_02185 at 2336.281 kb on - strand, within CCNA_02185 at 2336.284 kb on + strand, within CCNA_02185 at 2336.284 kb on + strand, within CCNA_02185 at 2336.284 kb on + strand, within CCNA_02185 at 2336.287 kb on - strand, within CCNA_02185 at 2336.292 kb on - strand, within CCNA_02185 at 2336.292 kb on - strand, within CCNA_02185 at 2336.294 kb on + strand, within CCNA_02185 at 2336.302 kb on - strand, within CCNA_02185 at 2336.318 kb on - strand, within CCNA_02185 at 2336.338 kb on + strand, within CCNA_02185 at 2336.388 kb on - strand, within CCNA_02185 at 2336.416 kb on - strand, within CCNA_02185 at 2336.442 kb on + strand, within CCNA_02185 at 2336.452 kb on - strand, within CCNA_02185 at 2336.466 kb on + strand, within CCNA_02185 at 2336.483 kb on - strand, within CCNA_02185 at 2336.498 kb on + strand, within CCNA_02185 at 2336.508 kb on + strand, within CCNA_02185 at 2336.537 kb on + strand, within CCNA_02185 at 2336.540 kb on - strand, within CCNA_02185 at 2336.545 kb on - strand, within CCNA_02185 at 2336.545 kb on - strand, within CCNA_02185 at 2336.556 kb on + strand, within CCNA_02185 at 2336.556 kb on + strand, within CCNA_02185 at 2336.556 kb on + strand, within CCNA_02185 at 2336.563 kb on - strand, within CCNA_02185 at 2336.563 kb on - strand, within CCNA_02185 at 2336.564 kb on - strand, within CCNA_02185 at 2336.564 kb on - strand, within CCNA_02185 at 2336.564 kb on - strand, within CCNA_02185 at 2336.589 kb on - strand, within CCNA_02185 at 2336.614 kb on + strand, within CCNA_02185 at 2336.614 kb on + strand, within CCNA_02185 at 2336.619 kb on + strand, within CCNA_02185
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM remove 2,334,162 + CCNA_02182 0.86 +0.7 2,334,162 + CCNA_02182 0.86 -0.3 2,334,170 - CCNA_02182 0.87 +0.3 2,334,191 - CCNA_02182 0.90 -0.9 2,334,223 + -0.3 2,334,270 - +0.0 2,334,270 - -0.3 2,335,134 + -0.5 2,335,157 + +0.1 2,335,176 + -1.9 2,335,178 + +0.1 2,335,178 + -2.7 2,335,186 - -1.8 2,335,186 - -0.5 2,335,186 - -1.0 2,335,186 - -1.8 2,335,222 - CCNA_02184 0.15 -1.2 2,335,242 + CCNA_02184 0.20 -2.2 2,335,247 + CCNA_02184 0.21 +0.9 2,335,285 + CCNA_02184 0.29 -2.3 2,335,302 + CCNA_02184 0.32 -2.0 2,335,322 + +0.7 2,335,370 + CCNA_02184 0.47 -3.0 2,335,377 + CCNA_02184 0.48 +0.3 2,335,382 + CCNA_02184 0.49 -0.9 2,335,402 - CCNA_02184 0.54 +0.1 2,335,404 - CCNA_02184 0.54 -0.3 2,335,413 + CCNA_02184 0.56 -0.4 2,335,413 + CCNA_02184 0.56 +0.3 2,335,426 - CCNA_02184 0.59 -1.1 2,335,431 + CCNA_02184 0.60 -0.6 2,335,431 + CCNA_02184 0.60 +1.3 2,335,439 - CCNA_02184 0.62 -1.2 2,335,440 + CCNA_02184 0.62 -2.5 2,335,464 + CCNA_02184 0.67 +0.8 2,335,477 + CCNA_02184 0.70 -2.5 2,335,490 - CCNA_02184 0.72 -1.3 2,335,547 - CCNA_02184 0.85 -1.5 2,335,612 + +0.1 2,335,613 - -2.7 2,335,635 - +1.1 2,335,657 + +0.2 2,335,660 - +0.3 2,335,665 - -1.3 2,335,736 + -0.2 2,335,737 + -2.8 2,335,755 - -1.8 2,335,758 - +0.2 2,335,766 - +1.2 2,335,767 - +2.4 2,335,767 - +2.3 2,335,959 + -0.5 2,336,022 + +0.9 2,336,041 + +1.1 2,336,156 + -1.3 2,336,184 + -3.3 2,336,184 + -1.1 2,336,192 - -1.3 2,336,205 + +0.1 2,336,227 - CCNA_02185 0.11 -0.3 2,336,243 + CCNA_02185 0.12 -1.7 2,336,245 + CCNA_02185 0.12 -1.5 2,336,245 + CCNA_02185 0.12 -1.3 2,336,251 + CCNA_02185 0.12 -0.1 2,336,251 + CCNA_02185 0.12 +1.0 2,336,251 - CCNA_02185 0.12 -0.6 2,336,253 - CCNA_02185 0.13 -1.4 2,336,273 + CCNA_02185 0.14 +0.9 2,336,281 - CCNA_02185 0.14 +0.4 2,336,284 + CCNA_02185 0.14 -1.9 2,336,284 + CCNA_02185 0.14 -0.9 2,336,284 + CCNA_02185 0.14 -0.3 2,336,287 - CCNA_02185 0.14 -0.8 2,336,292 - CCNA_02185 0.15 -1.3 2,336,292 - CCNA_02185 0.15 -1.2 2,336,294 + CCNA_02185 0.15 -1.4 2,336,302 - CCNA_02185 0.15 +0.5 2,336,318 - CCNA_02185 0.16 -2.6 2,336,338 + CCNA_02185 0.17 -1.9 2,336,388 - CCNA_02185 0.20 -1.3 2,336,416 - CCNA_02185 0.22 -0.7 2,336,442 + CCNA_02185 0.23 -1.1 2,336,452 - CCNA_02185 0.24 -2.1 2,336,466 + CCNA_02185 0.24 +0.4 2,336,483 - CCNA_02185 0.25 -0.3 2,336,498 + CCNA_02185 0.26 -0.8 2,336,508 + CCNA_02185 0.27 +0.1 2,336,537 + CCNA_02185 0.28 -0.4 2,336,540 - CCNA_02185 0.28 -1.7 2,336,545 - CCNA_02185 0.29 -0.3 2,336,545 - CCNA_02185 0.29 -2.0 2,336,556 + CCNA_02185 0.29 +0.4 2,336,556 + CCNA_02185 0.29 +0.5 2,336,556 + CCNA_02185 0.29 -0.3 2,336,563 - CCNA_02185 0.30 +0.3 2,336,563 - CCNA_02185 0.30 -0.9 2,336,564 - CCNA_02185 0.30 -0.1 2,336,564 - CCNA_02185 0.30 -1.5 2,336,564 - CCNA_02185 0.30 -1.4 2,336,589 - CCNA_02185 0.31 -0.9 2,336,614 + CCNA_02185 0.33 -2.3 2,336,614 + CCNA_02185 0.33 +0.3 2,336,619 + CCNA_02185 0.33 -0.9
Or see this region's nucleotide sequence