Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02077

Experiment: PYE with Benzethonium chloride 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02075 and CCNA_02076 are separated by 92 nucleotidesCCNA_02076 and CCNA_02077 overlap by 4 nucleotidesCCNA_02077 and CCNA_02078 overlap by 4 nucleotides CCNA_02075: CCNA_02075 - peptidoglycan binding endopeptidase DipM, at 2,225,052 to 2,226,881 _02075 CCNA_02076: CCNA_02076 - protein-L-isoaspartate O-methyltransferase, at 2,226,974 to 2,227,642 _02076 CCNA_02077: CCNA_02077 - 5'(3')-nucleotidase/polyphosphatase SurE, at 2,227,639 to 2,228,430 _02077 CCNA_02078: CCNA_02078 - seryl-tRNA synthetase, at 2,228,427 to 2,229,875 _02078 Position (kb) 2227 2228 2229Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2226.865 kb on + strandat 2226.875 kb on + strandat 2226.919 kb on - strandat 2226.920 kb on - strandat 2226.943 kb on + strandat 2227.602 kb on + strandat 2227.610 kb on - strandat 2227.610 kb on - strandat 2227.687 kb on - strandat 2227.697 kb on + strandat 2227.845 kb on + strand, within CCNA_02077at 2227.870 kb on + strand, within CCNA_02077at 2227.955 kb on + strand, within CCNA_02077at 2228.007 kb on - strand, within CCNA_02077at 2228.007 kb on - strand, within CCNA_02077at 2228.131 kb on - strand, within CCNA_02077at 2228.221 kb on + strand, within CCNA_02077at 2228.221 kb on + strand, within CCNA_02077at 2228.285 kb on + strand, within CCNA_02077at 2228.293 kb on - strand, within CCNA_02077at 2228.374 kb on - strandat 2228.386 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
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2,226,865 + +2.8
2,226,875 + +0.2
2,226,919 - +2.4
2,226,920 - +1.7
2,226,943 + -0.4
2,227,602 + -1.4
2,227,610 - +2.1
2,227,610 - +0.8
2,227,687 - +2.1
2,227,697 + +0.8
2,227,845 + CCNA_02077 0.26 -2.6
2,227,870 + CCNA_02077 0.29 -1.4
2,227,955 + CCNA_02077 0.40 -0.2
2,228,007 - CCNA_02077 0.46 +1.4
2,228,007 - CCNA_02077 0.46 +1.9
2,228,131 - CCNA_02077 0.62 +2.0
2,228,221 + CCNA_02077 0.73 +1.2
2,228,221 + CCNA_02077 0.73 -1.1
2,228,285 + CCNA_02077 0.82 -0.7
2,228,293 - CCNA_02077 0.83 +1.4
2,228,374 - +2.1
2,228,386 - +2.1

Or see this region's nucleotide sequence