Experiment: PYE with Benzethonium chloride 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01730 and CCNA_01731 overlap by 4 nucleotides CCNA_01731 and CCNA_01732 overlap by 4 nucleotides
CCNA_01730: CCNA_01730 - amidophosphoribosyltransferase, at 1,858,257 to 1,859,759
_01730
CCNA_01731: CCNA_01731 - colicin V production protein CvpA, at 1,859,756 to 1,860,373
_01731
CCNA_01732: CCNA_01732 - DNA repair protein RadA, at 1,860,370 to 1,861,752
_01732
Position (kb)
1859
1860
1861 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1858.804 kb on + strand, within CCNA_01730 at 1858.812 kb on - strand, within CCNA_01730 at 1858.883 kb on + strand, within CCNA_01730 at 1858.892 kb on - strand, within CCNA_01730 at 1858.938 kb on + strand, within CCNA_01730 at 1858.990 kb on + strand, within CCNA_01730 at 1858.998 kb on - strand, within CCNA_01730 at 1859.012 kb on - strand, within CCNA_01730 at 1859.104 kb on - strand, within CCNA_01730 at 1859.251 kb on + strand, within CCNA_01730 at 1859.290 kb on + strand, within CCNA_01730 at 1859.306 kb on - strand, within CCNA_01730 at 1859.338 kb on + strand, within CCNA_01730 at 1859.348 kb on + strand, within CCNA_01730 at 1859.356 kb on - strand, within CCNA_01730 at 1859.358 kb on - strand, within CCNA_01730 at 1859.358 kb on - strand, within CCNA_01730 at 1859.361 kb on + strand, within CCNA_01730 at 1859.406 kb on - strand, within CCNA_01730 at 1859.406 kb on - strand, within CCNA_01730 at 1859.504 kb on + strand, within CCNA_01730 at 1859.509 kb on + strand, within CCNA_01730 at 1859.514 kb on + strand, within CCNA_01730 at 1859.544 kb on - strand, within CCNA_01730 at 1859.549 kb on - strand, within CCNA_01730 at 1859.551 kb on + strand, within CCNA_01730 at 1859.559 kb on - strand, within CCNA_01730 at 1859.576 kb on - strand, within CCNA_01730 at 1859.604 kb on + strand, within CCNA_01730 at 1859.604 kb on + strand, within CCNA_01730 at 1859.707 kb on - strand at 1859.785 kb on - strand at 1859.852 kb on + strand, within CCNA_01731 at 1859.860 kb on - strand, within CCNA_01731 at 1859.860 kb on - strand, within CCNA_01731 at 1859.860 kb on - strand, within CCNA_01731 at 1859.906 kb on - strand, within CCNA_01731 at 1859.939 kb on - strand, within CCNA_01731 at 1859.976 kb on - strand, within CCNA_01731 at 1859.990 kb on + strand, within CCNA_01731 at 1859.998 kb on - strand, within CCNA_01731 at 1859.998 kb on - strand, within CCNA_01731 at 1860.053 kb on - strand, within CCNA_01731 at 1860.197 kb on + strand, within CCNA_01731 at 1860.234 kb on - strand, within CCNA_01731 at 1860.239 kb on - strand, within CCNA_01731 at 1860.288 kb on - strand, within CCNA_01731 at 1860.333 kb on - strand at 1860.373 kb on + strand at 1860.380 kb on - strand at 1860.381 kb on - strand at 1860.390 kb on - strand at 1860.418 kb on + strand at 1860.458 kb on + strand at 1860.493 kb on + strand at 1860.539 kb on - strand, within CCNA_01732 at 1860.589 kb on + strand, within CCNA_01732 at 1860.589 kb on + strand, within CCNA_01732 at 1860.592 kb on - strand, within CCNA_01732 at 1860.597 kb on - strand, within CCNA_01732 at 1860.622 kb on + strand, within CCNA_01732 at 1860.622 kb on + strand, within CCNA_01732 at 1860.719 kb on - strand, within CCNA_01732 at 1860.740 kb on + strand, within CCNA_01732 at 1860.766 kb on + strand, within CCNA_01732 at 1860.922 kb on + strand, within CCNA_01732 at 1860.922 kb on + strand at 1860.947 kb on - strand, within CCNA_01732 at 1860.984 kb on - strand, within CCNA_01732 at 1861.011 kb on - strand, within CCNA_01732 at 1861.063 kb on + strand, within CCNA_01732 at 1861.123 kb on - strand, within CCNA_01732 at 1861.190 kb on - strand, within CCNA_01732 at 1861.214 kb on - strand, within CCNA_01732 at 1861.216 kb on + strand, within CCNA_01732 at 1861.216 kb on + strand, within CCNA_01732 at 1861.234 kb on - strand, within CCNA_01732 at 1861.234 kb on - strand, within CCNA_01732 at 1861.291 kb on - strand, within CCNA_01732 at 1861.340 kb on - strand, within CCNA_01732 at 1861.357 kb on + strand, within CCNA_01732
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM remove 1,858,804 + CCNA_01730 0.36 -0.6 1,858,812 - CCNA_01730 0.37 +1.5 1,858,883 + CCNA_01730 0.42 -0.3 1,858,892 - CCNA_01730 0.42 +0.9 1,858,938 + CCNA_01730 0.45 -0.0 1,858,990 + CCNA_01730 0.49 -1.6 1,858,998 - CCNA_01730 0.49 +1.8 1,859,012 - CCNA_01730 0.50 +1.6 1,859,104 - CCNA_01730 0.56 +1.3 1,859,251 + CCNA_01730 0.66 -1.6 1,859,290 + CCNA_01730 0.69 +0.8 1,859,306 - CCNA_01730 0.70 +1.5 1,859,338 + CCNA_01730 0.72 +0.6 1,859,348 + CCNA_01730 0.73 +0.1 1,859,356 - CCNA_01730 0.73 +1.4 1,859,358 - CCNA_01730 0.73 +0.3 1,859,358 - CCNA_01730 0.73 +0.6 1,859,361 + CCNA_01730 0.73 -0.3 1,859,406 - CCNA_01730 0.76 +1.0 1,859,406 - CCNA_01730 0.76 +1.2 1,859,504 + CCNA_01730 0.83 -0.6 1,859,509 + CCNA_01730 0.83 +1.1 1,859,514 + CCNA_01730 0.84 +0.2 1,859,544 - CCNA_01730 0.86 +0.8 1,859,549 - CCNA_01730 0.86 +1.1 1,859,551 + CCNA_01730 0.86 -0.2 1,859,559 - CCNA_01730 0.87 +0.4 1,859,576 - CCNA_01730 0.88 +0.1 1,859,604 + CCNA_01730 0.90 +0.2 1,859,604 + CCNA_01730 0.90 -1.1 1,859,707 - +1.2 1,859,785 - +1.9 1,859,852 + CCNA_01731 0.16 +0.3 1,859,860 - CCNA_01731 0.17 +1.8 1,859,860 - CCNA_01731 0.17 +1.3 1,859,860 - CCNA_01731 0.17 +0.8 1,859,906 - CCNA_01731 0.24 +2.0 1,859,939 - CCNA_01731 0.30 +2.9 1,859,976 - CCNA_01731 0.36 +2.1 1,859,990 + CCNA_01731 0.38 -0.9 1,859,998 - CCNA_01731 0.39 +1.8 1,859,998 - CCNA_01731 0.39 +2.9 1,860,053 - CCNA_01731 0.48 +1.3 1,860,197 + CCNA_01731 0.71 -0.9 1,860,234 - CCNA_01731 0.77 +1.4 1,860,239 - CCNA_01731 0.78 +1.6 1,860,288 - CCNA_01731 0.86 +1.4 1,860,333 - -0.1 1,860,373 + +1.5 1,860,380 - +1.7 1,860,381 - +1.6 1,860,390 - +1.3 1,860,418 + +0.0 1,860,458 + +1.8 1,860,493 + -0.4 1,860,539 - CCNA_01732 0.12 +0.8 1,860,589 + CCNA_01732 0.16 -1.2 1,860,589 + CCNA_01732 0.16 -0.3 1,860,592 - CCNA_01732 0.16 +2.1 1,860,597 - CCNA_01732 0.16 +1.8 1,860,622 + CCNA_01732 0.18 +0.3 1,860,622 + CCNA_01732 0.18 +2.9 1,860,719 - CCNA_01732 0.25 +1.0 1,860,740 + CCNA_01732 0.27 +1.1 1,860,766 + CCNA_01732 0.29 +1.2 1,860,922 + CCNA_01732 0.40 +1.6 1,860,922 + +2.9 1,860,947 - CCNA_01732 0.42 +0.9 1,860,984 - CCNA_01732 0.44 +0.9 1,861,011 - CCNA_01732 0.46 +0.3 1,861,063 + CCNA_01732 0.50 +0.2 1,861,123 - CCNA_01732 0.54 +2.7 1,861,190 - CCNA_01732 0.59 +2.2 1,861,214 - CCNA_01732 0.61 +0.5 1,861,216 + CCNA_01732 0.61 +0.3 1,861,216 + CCNA_01732 0.61 -0.2 1,861,234 - CCNA_01732 0.62 +0.3 1,861,234 - CCNA_01732 0.62 +1.3 1,861,291 - CCNA_01732 0.67 -0.3 1,861,340 - CCNA_01732 0.70 +0.5 1,861,357 + CCNA_01732 0.71 -1.1
Or see this region's nucleotide sequence