Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00658

Experiment: PYE with Benzethonium chloride 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00657 and CCNA_00658 overlap by 4 nucleotidesCCNA_00658 and CCNA_00659 are separated by 10 nucleotides CCNA_00657: CCNA_00657 - type I restriction-modification system specificity subunit, at 712,528 to 713,880 _00657 CCNA_00658: CCNA_00658 - 5-methylcytosine-specific restriction enzyme MRR, at 713,877 to 714,920 _00658 CCNA_00659: CCNA_00659 - type I restriction-modification system restriction subunit, at 714,931 to 717,825 _00659 Position (kb) 713 714 715Strain fitness (log2 ratio) -2 -1 0 1 2 3at 712.882 kb on - strand, within CCNA_00657at 712.887 kb on - strand, within CCNA_00657at 712.898 kb on - strand, within CCNA_00657at 712.898 kb on - strand, within CCNA_00657at 712.921 kb on + strand, within CCNA_00657at 712.996 kb on - strand, within CCNA_00657at 713.003 kb on + strand, within CCNA_00657at 713.003 kb on + strand, within CCNA_00657at 713.011 kb on - strand, within CCNA_00657at 713.040 kb on + strand, within CCNA_00657at 713.050 kb on + strand, within CCNA_00657at 713.066 kb on - strand, within CCNA_00657at 713.079 kb on - strand, within CCNA_00657at 713.114 kb on - strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.136 kb on + strand, within CCNA_00657at 713.144 kb on - strand, within CCNA_00657at 713.144 kb on - strand, within CCNA_00657at 713.144 kb on - strand, within CCNA_00657at 713.144 kb on - strand, within CCNA_00657at 713.183 kb on + strand, within CCNA_00657at 713.183 kb on + strand, within CCNA_00657at 713.183 kb on + strand, within CCNA_00657at 713.183 kb on + strand, within CCNA_00657at 713.202 kb on + strand, within CCNA_00657at 713.203 kb on + strand, within CCNA_00657at 713.216 kb on + strand, within CCNA_00657at 713.479 kb on + strand, within CCNA_00657at 713.507 kb on + strand, within CCNA_00657at 713.515 kb on - strand, within CCNA_00657at 713.515 kb on - strand, within CCNA_00657at 713.517 kb on - strand, within CCNA_00657at 713.543 kb on + strand, within CCNA_00657at 713.543 kb on + strand, within CCNA_00657at 713.551 kb on - strand, within CCNA_00657at 713.574 kb on + strand, within CCNA_00657at 713.605 kb on - strand, within CCNA_00657at 713.675 kb on + strand, within CCNA_00657at 713.737 kb on + strand, within CCNA_00657at 713.776 kb on - strandat 713.790 kb on + strandat 713.790 kb on + strandat 713.809 kb on + strandat 713.809 kb on + strandat 713.809 kb on + strandat 713.809 kb on + strandat 713.814 kb on + strandat 713.817 kb on - strandat 713.852 kb on + strandat 713.856 kb on + strandat 713.884 kb on + strandat 713.885 kb on + strandat 713.893 kb on - strandat 713.893 kb on - strandat 713.893 kb on - strandat 713.940 kb on - strandat 713.976 kb on + strandat 713.984 kb on - strand, within CCNA_00658at 713.986 kb on + strand, within CCNA_00658at 714.003 kb on - strand, within CCNA_00658at 714.044 kb on + strand, within CCNA_00658at 714.077 kb on - strand, within CCNA_00658at 714.111 kb on + strand, within CCNA_00658at 714.132 kb on + strand, within CCNA_00658at 714.132 kb on + strand, within CCNA_00658at 714.175 kb on + strand, within CCNA_00658at 714.253 kb on + strand, within CCNA_00658at 714.254 kb on - strand, within CCNA_00658at 714.255 kb on - strand, within CCNA_00658at 714.261 kb on - strand, within CCNA_00658at 714.261 kb on - strand, within CCNA_00658at 714.261 kb on - strand, within CCNA_00658at 714.272 kb on + strand, within CCNA_00658at 714.289 kb on - strand, within CCNA_00658at 714.308 kb on + strand, within CCNA_00658at 714.315 kb on + strand, within CCNA_00658at 714.315 kb on + strand, within CCNA_00658at 714.323 kb on - strandat 714.326 kb on + strand, within CCNA_00658at 714.333 kb on - strand, within CCNA_00658at 714.333 kb on - strand, within CCNA_00658at 714.336 kb on + strand, within CCNA_00658at 714.336 kb on + strand, within CCNA_00658at 714.338 kb on + strand, within CCNA_00658at 714.338 kb on + strand, within CCNA_00658at 714.380 kb on + strand, within CCNA_00658at 714.400 kb on - strand, within CCNA_00658at 714.419 kb on + strand, within CCNA_00658at 714.448 kb on - strand, within CCNA_00658at 714.449 kb on - strand, within CCNA_00658at 714.476 kb on + strand, within CCNA_00658at 714.484 kb on - strand, within CCNA_00658at 714.484 kb on - strand, within CCNA_00658at 714.496 kb on + strand, within CCNA_00658at 714.506 kb on + strand, within CCNA_00658at 714.528 kb on - strand, within CCNA_00658at 714.552 kb on - strand, within CCNA_00658at 714.562 kb on - strand, within CCNA_00658at 714.567 kb on + strand, within CCNA_00658at 714.575 kb on + strand, within CCNA_00658at 714.618 kb on + strand, within CCNA_00658at 714.675 kb on - strand, within CCNA_00658at 714.744 kb on - strand, within CCNA_00658at 714.755 kb on - strand, within CCNA_00658at 714.782 kb on + strand, within CCNA_00658at 714.816 kb on - strandat 714.825 kb on + strandat 714.825 kb on + strandat 714.846 kb on - strandat 714.887 kb on + strandat 714.887 kb on + strandat 714.897 kb on + strandat 714.900 kb on - strandat 714.913 kb on + strandat 714.913 kb on + strandat 714.915 kb on + strandat 714.948 kb on + strandat 714.948 kb on + strandat 714.969 kb on - strandat 714.999 kb on + strandat 715.069 kb on + strandat 715.075 kb on - strandat 715.077 kb on - strandat 715.077 kb on - strandat 715.077 kb on - strandat 715.098 kb on - strandat 715.110 kb on + strandat 715.134 kb on + strandat 715.138 kb on - strandat 715.191 kb on + strandat 715.194 kb on - strandat 715.199 kb on + strandat 715.207 kb on - strandat 715.216 kb on + strandat 715.224 kb on - strand, within CCNA_00659at 715.224 kb on - strand, within CCNA_00659at 715.234 kb on - strand, within CCNA_00659at 715.237 kb on + strand, within CCNA_00659at 715.242 kb on + strand, within CCNA_00659at 715.242 kb on + strand, within CCNA_00659at 715.245 kb on - strand, within CCNA_00659at 715.250 kb on - strand, within CCNA_00659at 715.258 kb on + strand, within CCNA_00659at 715.317 kb on + strand, within CCNA_00659at 715.346 kb on + strand, within CCNA_00659at 715.360 kb on - strand, within CCNA_00659at 715.426 kb on - strand, within CCNA_00659at 715.438 kb on - strand, within CCNA_00659at 715.440 kb on + strand, within CCNA_00659at 715.448 kb on - strand, within CCNA_00659at 715.464 kb on + strand, within CCNA_00659at 715.464 kb on + strand, within CCNA_00659at 715.497 kb on - strand, within CCNA_00659at 715.497 kb on - strand, within CCNA_00659at 715.553 kb on + strand, within CCNA_00659at 715.593 kb on + strand, within CCNA_00659at 715.607 kb on - strand, within CCNA_00659at 715.651 kb on + strand, within CCNA_00659at 715.659 kb on - strand, within CCNA_00659at 715.676 kb on - strand, within CCNA_00659at 715.696 kb on + strand, within CCNA_00659at 715.746 kb on - strand, within CCNA_00659at 715.763 kb on + strand, within CCNA_00659at 715.763 kb on + strand, within CCNA_00659at 715.773 kb on + strand, within CCNA_00659at 715.776 kb on - strand, within CCNA_00659at 715.781 kb on - strand, within CCNA_00659at 715.792 kb on - strand, within CCNA_00659at 715.799 kb on + strand, within CCNA_00659at 715.799 kb on + strand, within CCNA_00659at 715.803 kb on + strand, within CCNA_00659at 715.839 kb on - strand, within CCNA_00659at 715.853 kb on + strand, within CCNA_00659at 715.861 kb on - strand, within CCNA_00659at 715.863 kb on + strand, within CCNA_00659at 715.871 kb on - strand, within CCNA_00659at 715.883 kb on - strand, within CCNA_00659at 715.885 kb on + strand, within CCNA_00659

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
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712,882 - CCNA_00657 0.26 +0.1
712,887 - CCNA_00657 0.27 -0.9
712,898 - CCNA_00657 0.27 -1.8
712,898 - CCNA_00657 0.27 +0.4
712,921 + CCNA_00657 0.29 +1.1
712,996 - CCNA_00657 0.35 -2.3
713,003 + CCNA_00657 0.35 +0.4
713,003 + CCNA_00657 0.35 +0.4
713,011 - CCNA_00657 0.36 -1.2
713,040 + CCNA_00657 0.38 +0.4
713,050 + CCNA_00657 0.39 +0.5
713,066 - CCNA_00657 0.40 -1.0
713,079 - CCNA_00657 0.41 -0.2
713,114 - CCNA_00657 0.43 +1.3
713,136 + CCNA_00657 0.45 +0.4
713,136 + CCNA_00657 0.45 -1.9
713,136 + CCNA_00657 0.45 -1.0
713,136 + CCNA_00657 0.45 -0.1
713,136 + CCNA_00657 0.45 +1.1
713,136 + CCNA_00657 0.45 +0.1
713,136 + CCNA_00657 0.45 -0.7
713,136 + CCNA_00657 0.45 +0.3
713,136 + CCNA_00657 0.45 -0.1
713,144 - CCNA_00657 0.46 +0.4
713,144 - CCNA_00657 0.46 -1.0
713,144 - CCNA_00657 0.46 +1.4
713,144 - CCNA_00657 0.46 +0.8
713,183 + CCNA_00657 0.48 -1.1
713,183 + CCNA_00657 0.48 +0.9
713,183 + CCNA_00657 0.48 -0.7
713,183 + CCNA_00657 0.48 +0.3
713,202 + CCNA_00657 0.50 +0.1
713,203 + CCNA_00657 0.50 -0.6
713,216 + CCNA_00657 0.51 +0.7
713,479 + CCNA_00657 0.70 +0.8
713,507 + CCNA_00657 0.72 -1.3
713,515 - CCNA_00657 0.73 +1.8
713,515 - CCNA_00657 0.73 +0.2
713,517 - CCNA_00657 0.73 -1.4
713,543 + CCNA_00657 0.75 +0.1
713,543 + CCNA_00657 0.75 -1.0
713,551 - CCNA_00657 0.76 -1.0
713,574 + CCNA_00657 0.77 -0.6
713,605 - CCNA_00657 0.80 -0.9
713,675 + CCNA_00657 0.85 +1.1
713,737 + CCNA_00657 0.89 -1.3
713,776 - +1.0
713,790 + -0.9
713,790 + -0.1
713,809 + +1.5
713,809 + +0.3
713,809 + +0.4
713,809 + -0.2
713,814 + +0.3
713,817 - -0.9
713,852 + -0.1
713,856 + +1.8
713,884 + +0.0
713,885 + -0.6
713,893 - -1.2
713,893 - -1.0
713,893 - +0.1
713,940 - +0.8
713,976 + -0.2
713,984 - CCNA_00658 0.10 -2.0
713,986 + CCNA_00658 0.10 +0.4
714,003 - CCNA_00658 0.12 +0.6
714,044 + CCNA_00658 0.16 -0.6
714,077 - CCNA_00658 0.19 -0.2
714,111 + CCNA_00658 0.22 -0.9
714,132 + CCNA_00658 0.24 +0.4
714,132 + CCNA_00658 0.24 -1.0
714,175 + CCNA_00658 0.29 +1.3
714,253 + CCNA_00658 0.36 +1.5
714,254 - CCNA_00658 0.36 -1.5
714,255 - CCNA_00658 0.36 +1.8
714,261 - CCNA_00658 0.37 +0.2
714,261 - CCNA_00658 0.37 -1.1
714,261 - CCNA_00658 0.37 +0.1
714,272 + CCNA_00658 0.38 +1.0
714,289 - CCNA_00658 0.39 -0.3
714,308 + CCNA_00658 0.41 -0.2
714,315 + CCNA_00658 0.42 +0.7
714,315 + CCNA_00658 0.42 +3.0
714,323 - +2.2
714,326 + CCNA_00658 0.43 +0.8
714,333 - CCNA_00658 0.44 +0.0
714,333 - CCNA_00658 0.44 -0.2
714,336 + CCNA_00658 0.44 -0.8
714,336 + CCNA_00658 0.44 +0.7
714,338 + CCNA_00658 0.44 +1.7
714,338 + CCNA_00658 0.44 +0.2
714,380 + CCNA_00658 0.48 -1.4
714,400 - CCNA_00658 0.50 +0.4
714,419 + CCNA_00658 0.52 -1.7
714,448 - CCNA_00658 0.55 -1.5
714,449 - CCNA_00658 0.55 +0.6
714,476 + CCNA_00658 0.57 +0.7
714,484 - CCNA_00658 0.58 +1.0
714,484 - CCNA_00658 0.58 -0.8
714,496 + CCNA_00658 0.59 +1.3
714,506 + CCNA_00658 0.60 +0.2
714,528 - CCNA_00658 0.62 -1.1
714,552 - CCNA_00658 0.65 -1.1
714,562 - CCNA_00658 0.66 +0.6
714,567 + CCNA_00658 0.66 +0.9
714,575 + CCNA_00658 0.67 +1.1
714,618 + CCNA_00658 0.71 -0.9
714,675 - CCNA_00658 0.76 +1.5
714,744 - CCNA_00658 0.83 +2.6
714,755 - CCNA_00658 0.84 +0.8
714,782 + CCNA_00658 0.87 +0.4
714,816 - +0.1
714,825 + +0.2
714,825 + -2.2
714,846 - +1.3
714,887 + +0.4
714,887 + -0.2
714,897 + +0.3
714,900 - +0.9
714,913 + -0.3
714,913 + -0.7
714,915 + -0.2
714,948 + +0.8
714,948 + +0.2
714,969 - -1.1
714,999 + -0.3
715,069 + +0.1
715,075 - -0.4
715,077 - -1.7
715,077 - +1.0
715,077 - -1.2
715,098 - +0.1
715,110 + +0.3
715,134 + -1.3
715,138 - +0.4
715,191 + -0.1
715,194 - -1.0
715,199 + -1.7
715,207 - +1.5
715,216 + +0.0
715,224 - CCNA_00659 0.10 +0.7
715,224 - CCNA_00659 0.10 -0.5
715,234 - CCNA_00659 0.10 +1.8
715,237 + CCNA_00659 0.11 -1.0
715,242 + CCNA_00659 0.11 +1.8
715,242 + CCNA_00659 0.11 +1.5
715,245 - CCNA_00659 0.11 -0.8
715,250 - CCNA_00659 0.11 +0.0
715,258 + CCNA_00659 0.11 +0.9
715,317 + CCNA_00659 0.13 +0.6
715,346 + CCNA_00659 0.14 +1.4
715,360 - CCNA_00659 0.15 -0.3
715,426 - CCNA_00659 0.17 -1.4
715,438 - CCNA_00659 0.18 -0.7
715,440 + CCNA_00659 0.18 +0.0
715,448 - CCNA_00659 0.18 +1.8
715,464 + CCNA_00659 0.18 +0.3
715,464 + CCNA_00659 0.18 +1.1
715,497 - CCNA_00659 0.20 +1.2
715,497 - CCNA_00659 0.20 -0.9
715,553 + CCNA_00659 0.21 +0.3
715,593 + CCNA_00659 0.23 -1.5
715,607 - CCNA_00659 0.23 -0.9
715,651 + CCNA_00659 0.25 -0.0
715,659 - CCNA_00659 0.25 +1.6
715,676 - CCNA_00659 0.26 -0.8
715,696 + CCNA_00659 0.26 +0.3
715,746 - CCNA_00659 0.28 +1.1
715,763 + CCNA_00659 0.29 -2.3
715,763 + CCNA_00659 0.29 -0.9
715,773 + CCNA_00659 0.29 -0.7
715,776 - CCNA_00659 0.29 +0.9
715,781 - CCNA_00659 0.29 -1.6
715,792 - CCNA_00659 0.30 -0.8
715,799 + CCNA_00659 0.30 -0.6
715,799 + CCNA_00659 0.30 -0.2
715,803 + CCNA_00659 0.30 -0.4
715,839 - CCNA_00659 0.31 -0.4
715,853 + CCNA_00659 0.32 -2.2
715,861 - CCNA_00659 0.32 -2.2
715,863 + CCNA_00659 0.32 +0.5
715,871 - CCNA_00659 0.32 +0.4
715,883 - CCNA_00659 0.33 -1.5
715,885 + CCNA_00659 0.33 -0.5

Or see this region's nucleotide sequence