Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00365

Experiment: PYE with Benzethonium chloride 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00364 and CCNA_00365 are separated by 122 nucleotidesCCNA_00365 and CCNA_00366 are separated by 353 nucleotides CCNA_00364: CCNA_00364 - deoxyhypusine synthase, at 380,179 to 381,273 _00364 CCNA_00365: CCNA_00365 - ornithine decarboxylase, at 381,396 to 382,655 _00365 CCNA_00366: CCNA_00366 - phosphonates transport ATP-binding protein phnC, at 383,009 to 383,803 _00366 Position (kb) 381 382 383Strain fitness (log2 ratio) -2 -1 0 1 2 3at 381.303 kb on - strandat 381.303 kb on - strandat 381.303 kb on - strandat 381.303 kb on - strandat 381.365 kb on - strandat 381.365 kb on - strandat 381.435 kb on - strandat 381.459 kb on - strandat 381.459 kb on - strandat 382.667 kb on - strandat 382.686 kb on - strandat 382.712 kb on - strandat 382.712 kb on - strandat 382.720 kb on - strandat 382.720 kb on - strandat 382.731 kb on - strandat 382.731 kb on - strandat 382.794 kb on + strandat 382.801 kb on - strandat 382.802 kb on - strandat 382.841 kb on + strandat 382.841 kb on + strandat 382.898 kb on + strandat 382.898 kb on + strandat 382.898 kb on + strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.906 kb on - strandat 382.915 kb on - strandat 382.932 kb on + strandat 382.984 kb on - strandat 382.988 kb on + strandat 383.008 kb on - strandat 383.014 kb on + strandat 383.127 kb on + strand, within CCNA_00366at 383.145 kb on - strand, within CCNA_00366at 383.150 kb on + strand, within CCNA_00366at 383.163 kb on - strand, within CCNA_00366at 383.178 kb on + strand, within CCNA_00366at 383.179 kb on - strand, within CCNA_00366at 383.179 kb on - strand, within CCNA_00366at 383.186 kb on - strand, within CCNA_00366at 383.186 kb on - strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.222 kb on + strand, within CCNA_00366at 383.230 kb on - strand, within CCNA_00366at 383.274 kb on - strand, within CCNA_00366at 383.292 kb on + strand, within CCNA_00366at 383.300 kb on - strand, within CCNA_00366at 383.320 kb on + strand, within CCNA_00366at 383.320 kb on + strand, within CCNA_00366at 383.353 kb on + strand, within CCNA_00366at 383.361 kb on - strand, within CCNA_00366at 383.361 kb on - strand, within CCNA_00366at 383.363 kb on + strand, within CCNA_00366at 383.365 kb on - strand, within CCNA_00366at 383.372 kb on + strand, within CCNA_00366at 383.406 kb on + strandat 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.417 kb on + strand, within CCNA_00366at 383.427 kb on + strand, within CCNA_00366at 383.460 kb on + strand, within CCNA_00366at 383.491 kb on - strand, within CCNA_00366at 383.493 kb on + strand, within CCNA_00366at 383.495 kb on + strand, within CCNA_00366at 383.520 kb on - strand, within CCNA_00366at 383.520 kb on - strand, within CCNA_00366at 383.521 kb on + strand, within CCNA_00366at 383.546 kb on + strand, within CCNA_00366at 383.582 kb on + strand, within CCNA_00366at 383.590 kb on - strand, within CCNA_00366at 383.605 kb on + strand, within CCNA_00366at 383.618 kb on + strand, within CCNA_00366at 383.626 kb on - strand, within CCNA_00366at 383.636 kb on + strand, within CCNA_00366at 383.639 kb on - strand, within CCNA_00366at 383.644 kb on + strand, within CCNA_00366at 383.644 kb on - strand, within CCNA_00366at 383.650 kb on + strand, within CCNA_00366

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Benzethonium chloride 0.001 mM
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381,303 - +1.7
381,303 - +2.0
381,303 - +2.0
381,303 - +1.8
381,365 - +2.5
381,365 - +1.5
381,435 - +3.1
381,459 - +2.6
381,459 - +2.5
382,667 - +2.8
382,686 - +2.6
382,712 - +2.6
382,712 - +2.6
382,720 - +2.6
382,720 - +3.0
382,731 - +2.7
382,731 - +2.4
382,794 + -1.3
382,801 - -2.2
382,802 - -0.2
382,841 + -2.3
382,841 + -0.5
382,898 + -0.9
382,898 + -2.3
382,898 + -2.0
382,906 - -0.8
382,906 - -1.7
382,906 - -1.9
382,906 - -0.9
382,906 - +0.6
382,906 - +0.2
382,906 - -1.0
382,915 - -1.3
382,932 + -1.4
382,984 - -0.5
382,988 + -0.6
383,008 - +0.0
383,014 + +1.2
383,127 + CCNA_00366 0.15 +0.7
383,145 - CCNA_00366 0.17 -0.2
383,150 + CCNA_00366 0.18 +1.6
383,163 - CCNA_00366 0.19 -0.4
383,178 + CCNA_00366 0.21 +1.6
383,179 - CCNA_00366 0.21 -0.7
383,179 - CCNA_00366 0.21 -2.2
383,186 - CCNA_00366 0.22 -1.4
383,186 - CCNA_00366 0.22 +0.0
383,222 + CCNA_00366 0.27 +0.9
383,222 + CCNA_00366 0.27 +1.9
383,222 + CCNA_00366 0.27 +0.8
383,222 + CCNA_00366 0.27 +1.5
383,230 - CCNA_00366 0.28 -0.2
383,274 - CCNA_00366 0.33 +0.4
383,292 + CCNA_00366 0.36 +2.5
383,300 - CCNA_00366 0.37 -1.9
383,320 + CCNA_00366 0.39 +1.6
383,320 + CCNA_00366 0.39 +2.3
383,353 + CCNA_00366 0.43 +0.6
383,361 - CCNA_00366 0.44 -0.2
383,361 - CCNA_00366 0.44 +0.6
383,363 + CCNA_00366 0.45 +1.5
383,365 - CCNA_00366 0.45 +1.0
383,372 + CCNA_00366 0.46 +2.1
383,406 + +1.2
383,417 + CCNA_00366 0.51 +0.9
383,417 + CCNA_00366 0.51 +1.1
383,417 + CCNA_00366 0.51 +1.4
383,417 + CCNA_00366 0.51 +2.0
383,427 + CCNA_00366 0.53 +2.0
383,460 + CCNA_00366 0.57 +1.2
383,491 - CCNA_00366 0.61 +1.4
383,493 + CCNA_00366 0.61 +0.9
383,495 + CCNA_00366 0.61 +0.6
383,520 - CCNA_00366 0.64 -0.1
383,520 - CCNA_00366 0.64 -0.4
383,521 + CCNA_00366 0.64 +1.1
383,546 + CCNA_00366 0.68 +2.6
383,582 + CCNA_00366 0.72 +0.4
383,590 - CCNA_00366 0.73 -2.1
383,605 + CCNA_00366 0.75 +1.7
383,618 + CCNA_00366 0.77 +1.5
383,626 - CCNA_00366 0.78 +1.6
383,636 + CCNA_00366 0.79 +1.6
383,639 - CCNA_00366 0.79 -1.3
383,644 + CCNA_00366 0.80 +1.0
383,644 - CCNA_00366 0.80 -0.4
383,650 + CCNA_00366 0.81 +1.3

Or see this region's nucleotide sequence