Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS21115

Experiment: Recovery broth with Amoxicillin 0.003 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Amoxicillin 0.003 mM
2,156,596	+		BBR_RS19490	0.15	-1.9
2,156,603	-		BBR_RS19490	0.16	-0.7
2,156,604	-		BBR_RS19490	0.16	-1.4
2,156,605	-		BBR_RS19490	0.16	-0.6
2,156,621	+		BBR_RS19490	0.17	+0.1
2,156,629	-		BBR_RS19490	0.18	+0.2
2,156,643	+		BBR_RS19490	0.19	-0.1
2,156,659	-		BBR_RS19490	0.20	+0.1
2,156,669	+		BBR_RS19490	0.21	+0.6
2,156,676	+		BBR_RS19490	0.21	-0.5
2,156,681	+		BBR_RS19490	0.22	-0.2
2,156,682	+		BBR_RS19490	0.22	+0.7
2,156,683	+		BBR_RS19490	0.22	+0.2
2,156,689	-		BBR_RS19490	0.22	-0.3
2,156,689	-		BBR_RS19490	0.22	+0.1
2,156,692	+		BBR_RS19490	0.23	+0.2
2,156,692	+		BBR_RS19490	0.23	+0.9
2,156,694	-		BBR_RS19490	0.23	-0.2
2,156,694	-		BBR_RS19490	0.23	-0.0
2,156,694	-		BBR_RS19490	0.23	-0.0
2,156,700	-		BBR_RS19490	0.23	-0.8
2,156,700	-		BBR_RS19490	0.23	-0.3
2,156,700	-		BBR_RS19490	0.23	+0.3
2,156,700	-		BBR_RS19490	0.23	-0.6
2,156,700	-		BBR_RS19490	0.23	-0.3
2,156,700	-		BBR_RS19490	0.23	-1.3
2,156,700	-		BBR_RS19490	0.23	-0.9
2,156,719	-		BBR_RS19490	0.25	-0.1
2,156,721	+		BBR_RS19490	0.25	+0.5
2,156,729	-		BBR_RS19490	0.26	-0.2
2,156,730	+		BBR_RS19490	0.26	+0.4
2,156,735	+		BBR_RS19490	0.26	+1.9
2,156,738	-		BBR_RS19490	0.26	-0.0
2,156,821	-		BBR_RS19490	0.33	+0.2
2,156,847	+		BBR_RS19490	0.35	-0.3
2,156,855	-		BBR_RS19490	0.36	+0.8
2,156,862	+		BBR_RS19490	0.36	+0.3
2,156,870	-		BBR_RS19490	0.37	+0.4
2,156,875	-		BBR_RS19490	0.37	+0.3
2,156,891	-		BBR_RS19490	0.38	+0.9
2,156,891	-		BBR_RS19490	0.38	+0.6
2,156,891	-		BBR_RS19490	0.38	-0.3
2,156,893	+		BBR_RS19490	0.39	+1.0
2,156,893	+		BBR_RS19490	0.39	+0.4
2,156,916	-		BBR_RS19490	0.40	-2.6
2,156,921	-		BBR_RS19490	0.41	-1.0
2,156,932	+		BBR_RS19490	0.42	-1.1
2,156,940	-		BBR_RS19490	0.42	-0.3
2,156,941	+		BBR_RS19490	0.42	+0.7
2,156,961	+		BBR_RS19490	0.44	+0.1
2,156,963	+		BBR_RS19490	0.44	-0.1
2,156,966	+		BBR_RS19490	0.44	-0.1
2,156,969	-		BBR_RS19490	0.45	+0.5
2,156,969	-		BBR_RS19490	0.45	-0.4
2,156,969	-		BBR_RS19490	0.45	+0.4
2,156,969	-		BBR_RS19490	0.45	-0.3
2,156,969	-		BBR_RS19490	0.45	+0.3
2,156,969	-		BBR_RS19490	0.45	+0.6
2,156,978	+		BBR_RS19490	0.45	+0.6
2,156,982	+		BBR_RS19490	0.46	+0.2
2,156,987	+		BBR_RS19490	0.46	-0.1
2,156,995	-		BBR_RS19490	0.47	+0.6
2,156,995	-		BBR_RS19490	0.47	-0.3
2,156,997	-		BBR_RS19490	0.47	+0.2
2,157,033	+		BBR_RS19490	0.50	-0.2
2,157,033	+		BBR_RS19490	0.50	-0.3
2,157,041	-		BBR_RS19490	0.50	+0.8
2,157,041	-		BBR_RS19490	0.50	-0.9
2,157,041	-		BBR_RS19490	0.50	-1.2
2,157,041	-		BBR_RS19490	0.50	-1.2
2,157,042	+		BBR_RS19490	0.50	-0.1
2,157,042	+		BBR_RS19490	0.50	-0.2
2,157,043	+		BBR_RS19490	0.51	-0.3
2,157,050	-		BBR_RS19490	0.51	-0.1
2,157,050	-		BBR_RS19490	0.51	+0.0
2,157,079	+		BBR_RS19490	0.53	+0.4
2,157,082	-		BBR_RS19490	0.54	-2.0
2,157,082	-		BBR_RS19490	0.54	-0.7
2,157,082	-		BBR_RS19490	0.54	+0.3
2,157,087	-		BBR_RS19490	0.54	-0.6
2,157,087	-		BBR_RS19490	0.54	-0.3
2,157,087	-		BBR_RS19490	0.54	+0.2
2,157,087	-		BBR_RS19490	0.54	-0.3
2,157,087	-		BBR_RS19490	0.54	+0.1
2,157,087	-		BBR_RS19490	0.54	-0.4
2,157,095	+		BBR_RS19490	0.55	-0.2
2,157,152	-		BBR_RS19490	0.59	+0.3
2,157,154	+		BBR_RS19490	0.59	-0.6
2,157,162	-		BBR_RS19490	0.60	-0.1
2,157,162	-		BBR_RS19490	0.60	-0.5
2,157,162	-		BBR_RS19490	0.60	-0.1
2,157,162	-		BBR_RS19490	0.60	+1.3
2,157,162	-		BBR_RS19490	0.60	+0.4
2,157,164	-		BBR_RS19490	0.60	-0.2
2,157,189	+		BBR_RS19490	0.62	-0.4
2,157,207	-		BBR_RS19490	0.63	-0.6
2,157,207	-		BBR_RS19490	0.63	-1.1
2,157,207	-		BBR_RS19490	0.63	-1.0
2,157,232	+		BBR_RS19490	0.65	+0.2
2,157,232	+		BBR_RS19490	0.65	-0.3
2,157,259	-		BBR_RS19490	0.68	-0.2
2,157,260	+		BBR_RS19490	0.68	+0.8
2,157,267	+		BBR_RS19490	0.68	+1.1
2,157,282	-		BBR_RS19490	0.69	-1.0
2,157,289	+		BBR_RS19490	0.70	+1.1
2,157,289	+		BBR_RS19490	0.70	-2.2
2,157,296	-		BBR_RS19490	0.71	+0.6
2,157,300	+		BBR_RS19490	0.71	-0.5
2,157,300	+		BBR_RS19490	0.71	-0.0
2,157,318	-		BBR_RS19490	0.72	+0.1
2,157,342	+		BBR_RS19490	0.74	+0.4
2,157,342	+		BBR_RS19490	0.74	-0.0
2,157,347	+		BBR_RS19490	0.75	+0.5
2,157,352	+		BBR_RS19490	0.75	-2.0
2,157,352	+		BBR_RS19490	0.75	-0.5
2,157,352	+		BBR_RS19490	0.75	+0.7
2,157,352	-		BBR_RS19490	0.75	-0.2
2,157,360	-		BBR_RS19490	0.76	-0.3
2,157,360	-		BBR_RS19490	0.76	+1.2
2,157,378	-		BBR_RS19490	0.77	-1.0
2,157,402	+		BBR_RS19490	0.79	-0.1
2,157,405	+		BBR_RS19490	0.79	+0.6
2,157,413	-		BBR_RS19490	0.80	-1.3
2,157,413	-		BBR_RS19490	0.80	-0.8
2,157,426	+		BBR_RS19490	0.81	+0.1
2,157,433	+		BBR_RS19490	0.81	+0.1
2,157,463	-		BBR_RS19490	0.84	-0.8
2,157,477	-		BBR_RS19490	0.85	-0.1
2,157,494	+		BBR_RS19490	0.86	-1.5
2,157,500	-		BBR_RS19490	0.87	+0.3
2,157,500	-		BBR_RS19490	0.87	+0.1
2,157,502	-		BBR_RS19490	0.87	+0.5
2,157,530	+		BBR_RS19490	0.89	+0.3
2,157,530	+		BBR_RS19490	0.89	-0.3
2,157,530	+		BBR_RS19490	0.89	-0.6
2,157,535	+		BBR_RS19490	0.89	+0.1
2,157,535	+		BBR_RS19490	0.89	-1.6
2,157,535	+		BBR_RS19490	0.89	-0.4
2,157,535	+		BBR_RS19490	0.89	+0.7
2,157,535	+		BBR_RS19490	0.89	-1.3
2,157,535	+		BBR_RS19490	0.89	-0.2
2,157,535	+		BBR_RS19490	0.89	+0.8
2,157,535	+		BBR_RS19490	0.89	+0.2
2,157,535	+		BBR_RS19490	0.89	-0.6
2,157,537	+		BBR_RS19490	0.90	+0.2
2,157,538	-		BBR_RS19490	0.90	-0.6
2,157,538	-		BBR_RS19490	0.90	-1.1
2,157,543	-				+0.1
2,157,543	-				-0.5
2,157,543	-				+0.8
2,157,543	-				-0.1
2,157,543	-				-0.6
2,157,543	-				+0.2
2,157,543	-				+0.1
2,157,543	-				+0.0
2,157,560	+				+0.6
2,157,560	+				+0.1
2,157,570	+				-0.9
2,157,575	-				+0.2
2,157,575	-				+0.0
2,157,578	+				-1.2
2,157,586	-				+0.1
2,157,586	-				+0.3
2,157,587	-				+0.3
2,157,595	+				-0.7
2,157,620	-				-0.9
2,157,637	+				+0.4
2,157,645	-				+0.5
2,157,645	-				+0.8
2,157,645	-				-0.6
2,157,645	-				+0.9
2,157,666	+				-0.2
2,157,674	+		BBR_RS21115	0.40	+0.4
2,157,674	+		BBR_RS21115	0.40	+0.9
2,157,718	+		BBR_RS21115	0.60	+0.4
2,157,718	+		BBR_RS21115	0.60	+0.5
2,157,718	+		BBR_RS21115	0.60	+0.0
2,157,723	+		BBR_RS21115	0.62	-0.3
2,157,723	+		BBR_RS21115	0.62	+1.1
2,157,723	+		BBR_RS21115	0.62	+0.7
2,157,723	+		BBR_RS21115	0.62	+0.3
2,157,728	+		BBR_RS21115	0.64	-0.4
2,157,731	-		BBR_RS21115	0.65	-0.0
2,157,731	-		BBR_RS21115	0.65	+0.1
2,157,732	-		BBR_RS21115	0.66	-0.8
2,157,744	+		BBR_RS21115	0.71	+0.3
2,157,750	+		BBR_RS21115	0.74	+0.1
2,157,773	-		BBR_RS21115	0.84	+0.0
2,157,808	+				-0.3
2,157,816	-				-0.0
2,157,824	-				+0.2
2,157,848	+				-0.1
2,157,848	+				-0.1
2,157,852	+				-0.7
2,157,853	+				-0.3
2,157,855	-				-0.3
2,157,870	+				-1.0
2,157,872	+				-0.6
2,157,878	-				+0.3
2,157,880	-				+0.3
2,157,880	-				+0.1
2,157,884	-				+0.6
2,157,896	+				+0.1
2,157,897	+				+0.8
2,157,897	+				-0.1
2,157,904	-				+0.5
2,157,905	+				-0.9
2,157,912	+				+0.2
2,157,919	-				+0.2
2,157,920	-				-1.2
2,157,967	+		BBR_RS19495	0.14	+0.0
2,157,967	+		BBR_RS19495	0.14	+0.9
2,157,967	+		BBR_RS19495	0.14	-0.2
2,157,985	-		BBR_RS19495	0.16	-1.3
2,157,986	-		BBR_RS19495	0.16	-0.7
2,158,001	+		BBR_RS19495	0.18	-0.7
2,158,052	+		BBR_RS19495	0.25	+0.2
2,158,053	+		BBR_RS19495	0.25	-0.1
2,158,053	+		BBR_RS19495	0.25	-1.0
2,158,061	-		BBR_RS19495	0.26	+0.0
2,158,068	+		BBR_RS19495	0.27	+0.4
2,158,068	+		BBR_RS19495	0.27	+0.2
2,158,073	+		BBR_RS19495	0.27	+0.5
2,158,076	-		BBR_RS19495	0.28	-0.5
2,158,080	+		BBR_RS19495	0.28	+0.2
2,158,080	+		BBR_RS19495	0.28	-0.4
2,158,080	+		BBR_RS19495	0.28	-0.0
2,158,080	-		BBR_RS19495	0.28	+1.4
2,158,088	-		BBR_RS19495	0.29	+0.5
2,158,088	-		BBR_RS19495	0.29	-0.0
2,158,088	-		BBR_RS19495	0.29	+0.9
2,158,088	-		BBR_RS19495	0.29	+0.4
2,158,088	-		BBR_RS19495	0.29	+0.7
2,158,092	+		BBR_RS19495	0.30	-1.0
2,158,104	-		BBR_RS19495	0.31	-0.3
2,158,104	-		BBR_RS19495	0.31	-1.1
2,158,121	+		BBR_RS19495	0.33	-0.7
2,158,121	+		BBR_RS19495	0.33	+0.4
2,158,121	+		BBR_RS19495	0.33	-0.2
2,158,129	-		BBR_RS19495	0.34	-0.4
2,158,129	-		BBR_RS19495	0.34	-2.2
2,158,151	+		BBR_RS19495	0.37	+0.2
2,158,151	+		BBR_RS19495	0.37	+0.1
2,158,151	+		BBR_RS19495	0.37	-0.5
2,158,157	+		BBR_RS19495	0.38	+0.2
2,158,157	+		BBR_RS19495	0.38	-0.4
2,158,157	+		BBR_RS19495	0.38	-0.6
2,158,159	-		BBR_RS19495	0.38	+0.7
2,158,159	-		BBR_RS19495	0.38	+0.4
2,158,170	-		BBR_RS19495	0.40	+0.7
2,158,170	-		BBR_RS19495	0.40	+0.1
2,158,183	+		BBR_RS19495	0.41	-0.4
2,158,183	+		BBR_RS19495	0.41	+0.2
2,158,188	+		BBR_RS19495	0.42	+0.3
2,158,193	+		BBR_RS19495	0.42	+0.2
2,158,193	+		BBR_RS19495	0.42	+0.5
2,158,193	+		BBR_RS19495	0.42	-1.4
2,158,196	-		BBR_RS19495	0.43	-0.4
2,158,199	+		BBR_RS19495	0.43	-0.1
2,158,201	-		BBR_RS19495	0.43	+0.6
2,158,201	-		BBR_RS19495	0.43	+0.2
2,158,201	-		BBR_RS19495	0.43	+0.3
2,158,202	-		BBR_RS19495	0.44	+0.4
2,158,202	-		BBR_RS19495	0.44	-1.3
2,158,232	+		BBR_RS19495	0.47	+0.2
2,158,237	+		BBR_RS19495	0.48	+0.1
2,158,240	-		BBR_RS19495	0.48	+0.0
2,158,263	-		BBR_RS19495	0.51	+0.4
2,158,265	+		BBR_RS19495	0.52	-1.0
2,158,265	+		BBR_RS19495	0.52	+0.9
2,158,267	+		BBR_RS19495	0.52	+0.6
2,158,283	-		BBR_RS19495	0.54	-0.6
2,158,285	+		BBR_RS19495	0.54	-0.4
2,158,285	+		BBR_RS19495	0.54	-0.5
2,158,285	+		BBR_RS19495	0.54	-2.6
2,158,295	-		BBR_RS19495	0.55	+0.8
2,158,307	+		BBR_RS19495	0.57	+0.9
2,158,329	-		BBR_RS19495	0.60	+0.4
2,158,336	+		BBR_RS19495	0.60	-0.1
2,158,344	-		BBR_RS19495	0.61	+0.1
2,158,344	-		BBR_RS19495	0.61	+0.2
2,158,344	-		BBR_RS19495	0.61	+0.0
2,158,344	-		BBR_RS19495	0.61	+0.1
2,158,356	+		BBR_RS19495	0.63	+0.3
2,158,374	+		BBR_RS19495	0.65	-0.5
2,158,376	+		BBR_RS19495	0.66	-0.1
2,158,396	-		BBR_RS19495	0.68	+0.2
2,158,401	-		BBR_RS19495	0.69	+0.6
2,158,426	-		BBR_RS19495	0.72	+0.3
2,158,446	+		BBR_RS19495	0.74	+0.8
2,158,454	-		BBR_RS19495	0.75	+0.2
2,158,456	+		BBR_RS19495	0.76	+0.0
2,158,456	+		BBR_RS19495	0.76	+0.5
2,158,456	+		BBR_RS19495	0.76	-2.0
2,158,456	+		BBR_RS19495	0.76	+0.4
2,158,464	-		BBR_RS19495	0.77	-0.7
2,158,464	-		BBR_RS19495	0.77	+0.5
2,158,466	+		BBR_RS19495	0.77	-0.4
2,158,469	-		BBR_RS19495	0.77	-0.2
2,158,471	+		BBR_RS19495	0.78	+0.4
2,158,471	+		BBR_RS19495	0.78	-1.0
2,158,471	+		BBR_RS19495	0.78	+0.9
2,158,471	+		BBR_RS19495	0.78	-0.3
2,158,473	+		BBR_RS19495	0.78	+0.0
2,158,479	-		BBR_RS19495	0.79	-0.1
2,158,479	-		BBR_RS19495	0.79	-0.2
2,158,482	+		BBR_RS19495	0.79	+1.2
2,158,482	+		BBR_RS19495	0.79	+0.6
2,158,482	+		BBR_RS19495	0.79	-0.5
2,158,482	+		BBR_RS19495	0.79	-0.8
2,158,490	-		BBR_RS19495	0.80	+0.2
2,158,490	-		BBR_RS19495	0.80	+0.0
2,158,490	-		BBR_RS19495	0.80	+1.3
2,158,490	-		BBR_RS19495	0.80	+0.0
2,158,490	-		BBR_RS19495	0.80	-2.9
2,158,490	-		BBR_RS19495	0.80	+0.7
2,158,523	+		BBR_RS19495	0.84	-0.2
2,158,535	+		BBR_RS19495	0.86	-0.8
2,158,554	+		BBR_RS19495	0.88	-0.3
2,158,567	-		BBR_RS19495	0.90	-0.4
2,158,568	-		BBR_RS19495	0.90	-0.3
2,158,568	-		BBR_RS19495	0.90	+0.1
2,158,570	+				+0.1
2,158,570	+				+0.0
2,158,637	+				+0.8
2,158,637	+				+0.8
2,158,654	-				+0.2
2,158,656	+				-0.5
2,158,666	+				+0.1
2,158,666	+				-0.3
2,158,666	+				-0.8
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2,158,748	+				-1.4
2,158,750	+				+0.2
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2,158,805	-				-1.7
2,158,807	+				-2.9
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2,158,807	+				-0.6