Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20665

Experiment: Recovery broth with Amoxicillin 0.003 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS11960 and BBR_RS20665 are separated by 153 nucleotidesBBR_RS20665 and BBR_RS11965 are separated by 11 nucleotidesBBR_RS11965 and BBR_RS11970 are separated by 86 nucleotidesBBR_RS11970 and BBR_RS11975 overlap by 4 nucleotidesBBR_RS11975 and BBR_RS11980 are separated by 63 nucleotides BBR_RS11960: BBR_RS11960 - phage head protein, at 438,235 to 439,134 _RS11960 BBR_RS20665: BBR_RS20665 - hypothetical protein, at 439,288 to 439,428 _RS20665 BBR_RS11965: BBR_RS11965 - hypothetical protein, at 439,440 to 439,673 _RS11965 BBR_RS11970: BBR_RS11970 - Phage transcriptional regulator, at 439,760 to 440,137 _RS11970 BBR_RS11975: BBR_RS11975 - hypothetical protein, at 440,134 to 440,328 _RS11975 BBR_RS11980: BBR_RS11980 - phage integrase, at 440,392 to 441,216 _RS11980 Position (kb) 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 438.297 kb on + strandat 438.298 kb on + strandat 438.305 kb on - strandat 438.306 kb on + strandat 438.306 kb on + strandat 438.311 kb on - strandat 438.312 kb on - strandat 438.327 kb on + strand, within BBR_RS11960at 438.327 kb on + strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.335 kb on - strand, within BBR_RS11960at 438.363 kb on + strand, within BBR_RS11960at 438.381 kb on - strand, within BBR_RS11960at 438.408 kb on - strand, within BBR_RS11960at 438.440 kb on + strand, within BBR_RS11960at 438.440 kb on + strand, within BBR_RS11960at 438.448 kb on - strand, within BBR_RS11960at 438.448 kb on - strand, within BBR_RS11960at 438.450 kb on + strand, within BBR_RS11960at 438.462 kb on + strand, within BBR_RS11960at 438.462 kb on + strand, within BBR_RS11960at 438.477 kb on + strand, within BBR_RS11960at 438.486 kb on - strand, within BBR_RS11960at 438.486 kb on - strand, within BBR_RS11960at 438.491 kb on + strand, within BBR_RS11960at 438.491 kb on + strand, within BBR_RS11960at 438.499 kb on - strand, within BBR_RS11960at 438.501 kb on + strand, within BBR_RS11960at 438.501 kb on + strand, within BBR_RS11960at 438.509 kb on - strand, within BBR_RS11960at 438.526 kb on - strand, within BBR_RS11960at 438.556 kb on + strand, within BBR_RS11960at 438.556 kb on + strand, within BBR_RS11960at 438.556 kb on + strand, within BBR_RS11960at 438.561 kb on + strand, within BBR_RS11960at 438.564 kb on - strand, within BBR_RS11960at 438.564 kb on - strand, within BBR_RS11960at 438.564 kb on - strand, within BBR_RS11960at 438.569 kb on - strand, within BBR_RS11960at 438.569 kb on - strand, within BBR_RS11960at 438.569 kb on - strand, within BBR_RS11960at 438.579 kb on + strand, within BBR_RS11960at 438.591 kb on - strand, within BBR_RS11960at 438.607 kb on - strand, within BBR_RS11960at 438.607 kb on - strand, within BBR_RS11960at 438.612 kb on + strand, within BBR_RS11960at 438.614 kb on - strand, within BBR_RS11960at 438.626 kb on - strand, within BBR_RS11960at 438.629 kb on - strand, within BBR_RS11960at 438.639 kb on - strand, within BBR_RS11960at 438.654 kb on - strand, within BBR_RS11960at 438.664 kb on + strand, within BBR_RS11960at 438.669 kb on + strand, within BBR_RS11960at 438.721 kb on + strand, within BBR_RS11960at 438.721 kb on + strand, within BBR_RS11960at 438.726 kb on + strand, within BBR_RS11960at 438.729 kb on - strand, within BBR_RS11960at 438.729 kb on - strand, within BBR_RS11960at 438.729 kb on - strand, within BBR_RS11960at 438.729 kb on - strand, within BBR_RS11960at 438.729 kb on - strand, within BBR_RS11960at 438.734 kb on - strand, within BBR_RS11960at 438.748 kb on + strand, within BBR_RS11960at 438.748 kb on + strand, within BBR_RS11960at 438.753 kb on + strand, within BBR_RS11960at 438.753 kb on + strand, within BBR_RS11960at 438.753 kb on + strand, within BBR_RS11960at 438.753 kb on + strand, within BBR_RS11960at 438.753 kb on + strand, within BBR_RS11960at 438.753 kb on + strand, within BBR_RS11960at 438.753 kb on + strand, within BBR_RS11960at 438.756 kb on - strand, within BBR_RS11960at 438.756 kb on - strand, within BBR_RS11960at 438.756 kb on - strand, within BBR_RS11960at 438.761 kb on - strand, within BBR_RS11960at 438.775 kb on + strand, within BBR_RS11960at 438.775 kb on + strand, within BBR_RS11960at 438.775 kb on - strand, within BBR_RS11960at 438.789 kb on + strand, within BBR_RS11960at 438.833 kb on - strand, within BBR_RS11960at 438.873 kb on + strand, within BBR_RS11960at 438.873 kb on + strand, within BBR_RS11960at 438.889 kb on - strand, within BBR_RS11960at 438.890 kb on + strand, within BBR_RS11960at 438.891 kb on - strand, within BBR_RS11960at 438.897 kb on + strand, within BBR_RS11960at 438.905 kb on - strand, within BBR_RS11960at 438.905 kb on - strand, within BBR_RS11960at 438.905 kb on - strand, within BBR_RS11960at 438.905 kb on - strand, within BBR_RS11960at 438.905 kb on - strand, within BBR_RS11960at 438.905 kb on - strand, within BBR_RS11960at 438.911 kb on - strand, within BBR_RS11960at 438.923 kb on + strand, within BBR_RS11960at 438.939 kb on + strand, within BBR_RS11960at 438.958 kb on + strand, within BBR_RS11960at 438.958 kb on + strand, within BBR_RS11960at 438.963 kb on + strand, within BBR_RS11960at 438.963 kb on + strand, within BBR_RS11960at 438.966 kb on - strand, within BBR_RS11960at 438.966 kb on - strand, within BBR_RS11960at 438.966 kb on - strand, within BBR_RS11960at 438.966 kb on - strand, within BBR_RS11960at 438.966 kb on - strand, within BBR_RS11960at 438.985 kb on - strand, within BBR_RS11960at 438.985 kb on - strand, within BBR_RS11960at 438.985 kb on - strand, within BBR_RS11960at 438.992 kb on - strand, within BBR_RS11960at 439.047 kb on + strandat 439.070 kb on + strandat 439.070 kb on + strandat 439.070 kb on + strandat 439.083 kb on - strandat 439.086 kb on + strandat 439.086 kb on - strandat 439.087 kb on + strandat 439.097 kb on + strandat 439.104 kb on + strandat 439.104 kb on + strandat 439.110 kb on - strandat 439.112 kb on - strandat 439.112 kb on - strandat 439.160 kb on + strandat 439.162 kb on + strandat 439.168 kb on + strandat 439.176 kb on - strandat 439.176 kb on - strandat 439.186 kb on - strandat 439.199 kb on - strandat 439.200 kb on + strandat 439.210 kb on + strandat 439.219 kb on - strandat 439.219 kb on - strandat 439.226 kb on - strandat 439.249 kb on - strandat 439.271 kb on - strandat 439.271 kb on - strandat 439.296 kb on + strandat 439.298 kb on + strandat 439.329 kb on + strand, within BBR_RS20665at 439.344 kb on + strand, within BBR_RS20665at 439.344 kb on + strand, within BBR_RS20665at 439.358 kb on + strand, within BBR_RS20665at 439.361 kb on - strand, within BBR_RS20665at 439.361 kb on - strand, within BBR_RS20665at 439.365 kb on + strand, within BBR_RS20665at 439.365 kb on + strand, within BBR_RS20665at 439.373 kb on - strand, within BBR_RS20665at 439.373 kb on - strand, within BBR_RS20665at 439.373 kb on - strand, within BBR_RS20665at 439.377 kb on - strand, within BBR_RS20665at 439.397 kb on - strand, within BBR_RS20665at 439.414 kb on + strand, within BBR_RS20665at 439.414 kb on + strand, within BBR_RS20665at 439.458 kb on + strandat 439.466 kb on - strand, within BBR_RS11965at 439.466 kb on - strand, within BBR_RS11965at 439.481 kb on + strand, within BBR_RS11965at 439.481 kb on + strand, within BBR_RS11965at 439.481 kb on + strand, within BBR_RS11965at 439.481 kb on + strand, within BBR_RS11965at 439.482 kb on + strand, within BBR_RS11965at 439.482 kb on + strand, within BBR_RS11965at 439.482 kb on + strand, within BBR_RS11965at 439.482 kb on + strand, within BBR_RS11965at 439.482 kb on + strand, within BBR_RS11965at 439.489 kb on - strand, within BBR_RS11965at 439.489 kb on - strand, within BBR_RS11965at 439.489 kb on - strand, within BBR_RS11965at 439.489 kb on - strand, within BBR_RS11965at 439.490 kb on - strand, within BBR_RS11965at 439.501 kb on - strand, within BBR_RS11965at 439.527 kb on - strand, within BBR_RS11965at 439.546 kb on + strand, within BBR_RS11965at 439.546 kb on + strand, within BBR_RS11965at 439.549 kb on - strand, within BBR_RS11965at 439.555 kb on - strand, within BBR_RS11965at 439.564 kb on - strand, within BBR_RS11965at 439.568 kb on + strand, within BBR_RS11965at 439.570 kb on - strand, within BBR_RS11965at 439.584 kb on + strand, within BBR_RS11965at 439.584 kb on + strand, within BBR_RS11965at 439.594 kb on + strand, within BBR_RS11965at 439.636 kb on - strand, within BBR_RS11965at 439.644 kb on + strand, within BBR_RS11965at 439.644 kb on + strand, within BBR_RS11965at 439.648 kb on + strand, within BBR_RS11965at 439.673 kb on + strandat 439.673 kb on + strandat 439.695 kb on - strandat 439.695 kb on - strandat 439.696 kb on - strandat 439.729 kb on + strandat 439.729 kb on + strandat 439.737 kb on - strandat 439.777 kb on - strandat 439.785 kb on - strandat 439.790 kb on - strandat 439.792 kb on - strandat 439.943 kb on - strand, within BBR_RS11970at 439.968 kb on - strand, within BBR_RS11970at 439.968 kb on - strand, within BBR_RS11970at 439.982 kb on - strand, within BBR_RS11970at 440.140 kb on - strandat 440.140 kb on - strandat 440.145 kb on - strandat 440.174 kb on - strand, within BBR_RS11975at 440.192 kb on - strand, within BBR_RS11975at 440.205 kb on + strand, within BBR_RS11975at 440.208 kb on + strand, within BBR_RS11975at 440.213 kb on - strand, within BBR_RS11975at 440.215 kb on + strand, within BBR_RS11975at 440.236 kb on - strand, within BBR_RS11975at 440.246 kb on - strand, within BBR_RS11975at 440.266 kb on - strand, within BBR_RS11975at 440.280 kb on - strand, within BBR_RS11975at 440.280 kb on - strand, within BBR_RS11975at 440.282 kb on + strand, within BBR_RS11975at 440.290 kb on - strand, within BBR_RS11975at 440.323 kb on - strandat 440.376 kb on + strandat 440.384 kb on + strandat 440.384 kb on + strandat 440.384 kb on + strandat 440.392 kb on - strandat 440.392 kb on - strandat 440.397 kb on + strandat 440.397 kb on + strandat 440.401 kb on + strandat 440.407 kb on + strandat 440.411 kb on - strandat 440.411 kb on - strandat 440.420 kb on + strandat 440.422 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Amoxicillin 0.003 mM
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438,297 + -0.0
438,298 + +0.6
438,305 - +0.7
438,306 + +1.2
438,306 + +1.2
438,311 - -0.2
438,312 - -0.0
438,327 + BBR_RS11960 0.10 -0.1
438,327 + BBR_RS11960 0.10 -0.5
438,335 - BBR_RS11960 0.11 -0.4
438,335 - BBR_RS11960 0.11 -1.3
438,335 - BBR_RS11960 0.11 -0.1
438,335 - BBR_RS11960 0.11 -0.5
438,335 - BBR_RS11960 0.11 -0.9
438,335 - BBR_RS11960 0.11 +0.5
438,335 - BBR_RS11960 0.11 -1.4
438,363 + BBR_RS11960 0.14 +0.4
438,381 - BBR_RS11960 0.16 -0.0
438,408 - BBR_RS11960 0.19 +1.4
438,440 + BBR_RS11960 0.23 +1.2
438,440 + BBR_RS11960 0.23 +0.9
438,448 - BBR_RS11960 0.24 +0.4
438,448 - BBR_RS11960 0.24 -0.9
438,450 + BBR_RS11960 0.24 -0.2
438,462 + BBR_RS11960 0.25 +1.4
438,462 + BBR_RS11960 0.25 -0.8
438,477 + BBR_RS11960 0.27 +0.3
438,486 - BBR_RS11960 0.28 +1.7
438,486 - BBR_RS11960 0.28 -1.2
438,491 + BBR_RS11960 0.28 +0.6
438,491 + BBR_RS11960 0.28 +0.3
438,499 - BBR_RS11960 0.29 -1.0
438,501 + BBR_RS11960 0.30 +0.2
438,501 + BBR_RS11960 0.30 +0.6
438,509 - BBR_RS11960 0.30 -0.0
438,526 - BBR_RS11960 0.32 +0.1
438,556 + BBR_RS11960 0.36 +0.7
438,556 + BBR_RS11960 0.36 -0.5
438,556 + BBR_RS11960 0.36 -1.3
438,561 + BBR_RS11960 0.36 -0.0
438,564 - BBR_RS11960 0.37 -0.7
438,564 - BBR_RS11960 0.37 +0.5
438,564 - BBR_RS11960 0.37 +0.3
438,569 - BBR_RS11960 0.37 -0.3
438,569 - BBR_RS11960 0.37 -0.6
438,569 - BBR_RS11960 0.37 +0.1
438,579 + BBR_RS11960 0.38 -0.0
438,591 - BBR_RS11960 0.40 -0.1
438,607 - BBR_RS11960 0.41 -0.1
438,607 - BBR_RS11960 0.41 -0.7
438,612 + BBR_RS11960 0.42 -0.1
438,614 - BBR_RS11960 0.42 +0.3
438,626 - BBR_RS11960 0.43 -0.3
438,629 - BBR_RS11960 0.44 +0.3
438,639 - BBR_RS11960 0.45 +1.3
438,654 - BBR_RS11960 0.47 -0.1
438,664 + BBR_RS11960 0.48 -0.6
438,669 + BBR_RS11960 0.48 +0.8
438,721 + BBR_RS11960 0.54 +0.8
438,721 + BBR_RS11960 0.54 +0.6
438,726 + BBR_RS11960 0.55 -1.1
438,729 - BBR_RS11960 0.55 +1.3
438,729 - BBR_RS11960 0.55 -0.0
438,729 - BBR_RS11960 0.55 -1.0
438,729 - BBR_RS11960 0.55 -0.4
438,729 - BBR_RS11960 0.55 -0.8
438,734 - BBR_RS11960 0.55 -0.7
438,748 + BBR_RS11960 0.57 +0.3
438,748 + BBR_RS11960 0.57 +0.4
438,753 + BBR_RS11960 0.58 -0.0
438,753 + BBR_RS11960 0.58 +0.4
438,753 + BBR_RS11960 0.58 +0.7
438,753 + BBR_RS11960 0.58 -0.5
438,753 + BBR_RS11960 0.58 -1.1
438,753 + BBR_RS11960 0.58 +0.7
438,753 + BBR_RS11960 0.58 -0.9
438,756 - BBR_RS11960 0.58 +1.7
438,756 - BBR_RS11960 0.58 +0.2
438,756 - BBR_RS11960 0.58 +0.2
438,761 - BBR_RS11960 0.58 -0.7
438,775 + BBR_RS11960 0.60 -0.5
438,775 + BBR_RS11960 0.60 -0.5
438,775 - BBR_RS11960 0.60 -2.5
438,789 + BBR_RS11960 0.62 -0.1
438,833 - BBR_RS11960 0.66 +0.2
438,873 + BBR_RS11960 0.71 -0.0
438,873 + BBR_RS11960 0.71 +0.1
438,889 - BBR_RS11960 0.73 -0.3
438,890 + BBR_RS11960 0.73 -0.5
438,891 - BBR_RS11960 0.73 -0.1
438,897 + BBR_RS11960 0.74 +0.1
438,905 - BBR_RS11960 0.74 -0.5
438,905 - BBR_RS11960 0.74 +1.3
438,905 - BBR_RS11960 0.74 +0.8
438,905 - BBR_RS11960 0.74 -0.1
438,905 - BBR_RS11960 0.74 +1.4
438,905 - BBR_RS11960 0.74 -0.7
438,911 - BBR_RS11960 0.75 -0.4
438,923 + BBR_RS11960 0.76 +0.3
438,939 + BBR_RS11960 0.78 +0.2
438,958 + BBR_RS11960 0.80 +1.4
438,958 + BBR_RS11960 0.80 +0.2
438,963 + BBR_RS11960 0.81 +0.2
438,963 + BBR_RS11960 0.81 +0.3
438,966 - BBR_RS11960 0.81 -0.0
438,966 - BBR_RS11960 0.81 -0.2
438,966 - BBR_RS11960 0.81 +0.5
438,966 - BBR_RS11960 0.81 +0.4
438,966 - BBR_RS11960 0.81 -0.0
438,985 - BBR_RS11960 0.83 -0.6
438,985 - BBR_RS11960 0.83 +0.5
438,985 - BBR_RS11960 0.83 +0.3
438,992 - BBR_RS11960 0.84 +0.3
439,047 + -1.6
439,070 + +0.8
439,070 + +0.2
439,070 + -0.7
439,083 - -0.3
439,086 + +0.9
439,086 - +0.1
439,087 + -1.2
439,097 + +0.6
439,104 + -0.6
439,104 + -0.3
439,110 - -0.5
439,112 - +0.3
439,112 - +0.3
439,160 + -0.4
439,162 + +0.1
439,168 + +0.3
439,176 - +0.4
439,176 - +0.1
439,186 - -0.7
439,199 - -0.2
439,200 + -2.9
439,210 + +0.4
439,219 - +0.5
439,219 - +0.1
439,226 - -0.2
439,249 - +0.3
439,271 - -0.1
439,271 - -0.2
439,296 + +0.5
439,298 + -1.5
439,329 + BBR_RS20665 0.29 -1.7
439,344 + BBR_RS20665 0.40 +0.3
439,344 + BBR_RS20665 0.40 +0.8
439,358 + BBR_RS20665 0.50 +0.6
439,361 - BBR_RS20665 0.52 +1.4
439,361 - BBR_RS20665 0.52 -1.4
439,365 + BBR_RS20665 0.55 -1.4
439,365 + BBR_RS20665 0.55 +1.1
439,373 - BBR_RS20665 0.60 -0.0
439,373 - BBR_RS20665 0.60 +0.0
439,373 - BBR_RS20665 0.60 +0.2
439,377 - BBR_RS20665 0.63 -0.5
439,397 - BBR_RS20665 0.77 +1.7
439,414 + BBR_RS20665 0.89 +1.9
439,414 + BBR_RS20665 0.89 -0.0
439,458 + +0.9
439,466 - BBR_RS11965 0.11 -0.0
439,466 - BBR_RS11965 0.11 -0.5
439,481 + BBR_RS11965 0.18 +0.1
439,481 + BBR_RS11965 0.18 +0.6
439,481 + BBR_RS11965 0.18 -0.2
439,481 + BBR_RS11965 0.18 -0.9
439,482 + BBR_RS11965 0.18 +0.3
439,482 + BBR_RS11965 0.18 +0.2
439,482 + BBR_RS11965 0.18 -0.0
439,482 + BBR_RS11965 0.18 -0.3
439,482 + BBR_RS11965 0.18 +0.2
439,489 - BBR_RS11965 0.21 -0.9
439,489 - BBR_RS11965 0.21 -0.3
439,489 - BBR_RS11965 0.21 +0.6
439,489 - BBR_RS11965 0.21 -2.1
439,490 - BBR_RS11965 0.21 +1.2
439,501 - BBR_RS11965 0.26 +0.3
439,527 - BBR_RS11965 0.37 -0.4
439,546 + BBR_RS11965 0.45 +0.1
439,546 + BBR_RS11965 0.45 +0.7
439,549 - BBR_RS11965 0.47 +0.4
439,555 - BBR_RS11965 0.49 -0.6
439,564 - BBR_RS11965 0.53 -0.2
439,568 + BBR_RS11965 0.55 -0.4
439,570 - BBR_RS11965 0.56 -0.3
439,584 + BBR_RS11965 0.62 +0.8
439,584 + BBR_RS11965 0.62 +0.0
439,594 + BBR_RS11965 0.66 +0.0
439,636 - BBR_RS11965 0.84 +0.9
439,644 + BBR_RS11965 0.87 +0.4
439,644 + BBR_RS11965 0.87 +0.4
439,648 + BBR_RS11965 0.89 +0.3
439,673 + -0.2
439,673 + +1.0
439,695 - +0.4
439,695 - -0.2
439,696 - +0.7
439,729 + +1.7
439,729 + +1.0
439,737 - +0.0
439,777 - +0.4
439,785 - -1.6
439,790 - -0.8
439,792 - -0.3
439,943 - BBR_RS11970 0.48 -2.3
439,968 - BBR_RS11970 0.55 -0.0
439,968 - BBR_RS11970 0.55 -1.0
439,982 - BBR_RS11970 0.59 -0.6
440,140 - -1.5
440,140 - -2.2
440,145 - +2.4
440,174 - BBR_RS11975 0.21 -1.3
440,192 - BBR_RS11975 0.30 +0.1
440,205 + BBR_RS11975 0.36 +0.5
440,208 + BBR_RS11975 0.38 -0.5
440,213 - BBR_RS11975 0.41 -0.1
440,215 + BBR_RS11975 0.42 +0.7
440,236 - BBR_RS11975 0.52 -0.6
440,246 - BBR_RS11975 0.57 +0.6
440,266 - BBR_RS11975 0.68 +0.8
440,280 - BBR_RS11975 0.75 -0.0
440,280 - BBR_RS11975 0.75 -0.2
440,282 + BBR_RS11975 0.76 +0.3
440,290 - BBR_RS11975 0.80 -0.5
440,323 - +0.1
440,376 + -1.4
440,384 + +0.1
440,384 + +0.7
440,384 + -0.3
440,392 - +1.0
440,392 - -0.4
440,397 + +0.6
440,397 + +1.5
440,401 + -1.6
440,407 + -0.1
440,411 - -0.9
440,411 - -0.4
440,420 + -0.7
440,422 + -2.3

Or see this region's nucleotide sequence