Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20210

Experiment: Recovery broth with Amoxicillin 0.003 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Amoxicillin 0.003 mM
2,343,936	+		BBR_RS20200	0.82	+0.2
2,343,936	+		BBR_RS20200	0.82	+0.6
2,343,936	-		BBR_RS20200	0.82	-0.1
2,343,940	+		BBR_RS20200	0.82	-0.0
2,343,940	+		BBR_RS20200	0.82	-0.6
2,343,940	+		BBR_RS20200	0.82	+0.3
2,343,940	+		BBR_RS20200	0.82	-0.2
2,343,940	+		BBR_RS20200	0.82	-1.1
2,343,948	-		BBR_RS20200	0.83	-0.2
2,343,950	+		BBR_RS20200	0.83	-0.1
2,343,950	+		BBR_RS20200	0.83	+0.2
2,343,950	+		BBR_RS20200	0.83	-0.9
2,343,953	+		BBR_RS20200	0.83	+1.1
2,343,955	+		BBR_RS20200	0.83	-0.2
2,343,958	-		BBR_RS20200	0.83	-0.2
2,343,959	+		BBR_RS20200	0.83	-0.2
2,343,962	-		BBR_RS20200	0.83	-0.0
2,343,963	-		BBR_RS20200	0.83	-2.6
2,343,963	-		BBR_RS20200	0.83	-0.8
2,343,976	+		BBR_RS20200	0.84	-0.2
2,343,976	+		BBR_RS20200	0.84	-3.8
2,343,977	-		BBR_RS20200	0.84	-0.3
2,344,018	+		BBR_RS20200	0.86	-0.6
2,344,021	+		BBR_RS20200	0.86	+0.1
2,344,040	+		BBR_RS20200	0.87	+0.3
2,344,048	-		BBR_RS20200	0.87	-0.4
2,344,048	-		BBR_RS20200	0.87	-1.1
2,344,056	+		BBR_RS20200	0.87	+0.5
2,344,056	+		BBR_RS20200	0.87	+0.5
2,344,056	+		BBR_RS20200	0.87	-0.2
2,344,061	+		BBR_RS20200	0.88	-0.6
2,344,061	+		BBR_RS20200	0.88	-0.5
2,344,062	-		BBR_RS20200	0.88	-0.2
2,344,064	-		BBR_RS20200	0.88	+0.8
2,344,064	-		BBR_RS20200	0.88	-1.7
2,344,069	-		BBR_RS20200	0.88	-0.5
2,344,069	-		BBR_RS20200	0.88	-1.3
2,344,069	-		BBR_RS20200	0.88	+0.1
2,344,071	+		BBR_RS20200	0.88	-0.7
2,344,084	-		BBR_RS20200	0.89	-0.7
2,344,084	-		BBR_RS20200	0.89	-0.5
2,344,095	-		BBR_RS20200	0.89	-0.2
2,344,105	-		BBR_RS20200	0.89	-0.5
2,344,123	+				-0.3
2,344,125	+				-0.5
2,344,125	+				-0.0
2,344,127	+				-0.4
2,344,127	+				-0.1
2,344,133	-				+0.1
2,344,133	-				+0.3
2,344,144	-				-1.1
2,344,152	+				-1.1
2,344,164	+				-0.1
2,344,172	-				-0.3
2,344,182	+				-0.5
2,344,183	+				-0.2
2,344,190	-				-0.2
2,344,190	-				-0.7
2,344,191	-				-0.3
2,344,192	-				-0.2
2,344,214	-				+0.3
2,344,214	-				-0.2
2,344,248	-				-1.1
2,344,272	+				+0.2
2,344,275	-				-1.9
2,344,275	-				-0.8
2,344,277	+				-0.0
2,344,277	+				-2.9
2,344,277	+				-0.4
2,344,277	+				-0.4
2,344,277	+				-0.1
2,344,277	+				-0.0
2,344,277	+				-0.2
2,344,277	+				-0.9
2,344,277	+				-0.1
2,344,277	+				-0.7
2,344,277	+				-0.2
2,344,277	+				+0.6
2,344,277	+				+1.2
2,344,277	+				-0.3
2,344,285	-				-0.0
2,344,285	-				+0.7
2,344,285	-				-0.4
2,344,285	-				-1.0
2,344,285	-				+0.1
2,344,288	+				-0.9
2,344,298	+				-0.2
2,344,306	-				+1.1
2,344,307	+				+0.1
2,344,322	+				-0.4
2,344,323	+				-0.0
2,344,328	+				-0.2
2,344,338	+				-0.8
2,344,338	+				+0.5
2,344,338	+				-0.2
2,344,346	-				+0.4
2,344,346	-				-0.0
2,344,346	-				-0.6
2,344,353	-				-1.4
2,344,353	-				+0.6
2,344,353	-				-0.6
2,344,357	+				-0.3
2,344,461	-				+0.2
2,344,670	+		BBR_RS20205	0.45	+1.4
2,344,788	+		BBR_RS20205	0.72	+0.8
2,344,898	-				+0.5
2,344,904	+				+0.0
2,344,913	+				-0.2
2,344,923	+				+0.1
2,344,926	-				-0.0
2,344,932	+				+0.4
2,344,932	+				+1.9
2,344,940	-				+0.7
2,344,940	-				+0.3
2,344,947	+				-0.9
2,344,954	-				+0.2
2,344,982	-		BBR_RS20210	0.12	+0.1
2,344,982	-		BBR_RS20210	0.12	+0.3
2,344,982	-		BBR_RS20210	0.12	+0.7
2,344,984	+		BBR_RS20210	0.13	+0.6
2,344,987	-		BBR_RS20210	0.14	+0.7
2,344,993	+		BBR_RS20210	0.15	+0.4
2,344,993	+		BBR_RS20210	0.15	+0.4
2,344,993	+		BBR_RS20210	0.15	-0.0
2,344,993	+		BBR_RS20210	0.15	+0.8
2,344,998	+		BBR_RS20210	0.16	+1.0
2,344,998	+		BBR_RS20210	0.16	-0.0
2,344,998	+		BBR_RS20210	0.16	+0.3
2,344,998	+		BBR_RS20210	0.16	+0.4
2,345,001	-		BBR_RS20210	0.17	-0.1
2,345,001	-		BBR_RS20210	0.17	-0.8
2,345,001	-		BBR_RS20210	0.17	+0.4
2,345,001	-		BBR_RS20210	0.17	+0.5
2,345,006	-		BBR_RS20210	0.18	-0.8
2,345,006	-		BBR_RS20210	0.18	-0.2
2,345,006	-		BBR_RS20210	0.18	-0.7
2,345,006	-		BBR_RS20210	0.18	+1.1
2,345,006	-		BBR_RS20210	0.18	+0.4
2,345,011	-		BBR_RS20210	0.20	+1.1
2,345,011	-		BBR_RS20210	0.20	+1.1
2,345,017	+		BBR_RS20210	0.21	+0.3
2,345,017	+		BBR_RS20210	0.21	-0.7
2,345,054	-		BBR_RS20210	0.31	-0.1
2,345,054	-		BBR_RS20210	0.31	+0.2
2,345,064	-		BBR_RS20210	0.33	+1.1
2,345,089	+		BBR_RS20210	0.39	+1.1
2,345,098	+		BBR_RS20210	0.42	-0.4
2,345,098	+		BBR_RS20210	0.42	+0.5
2,345,157	+		BBR_RS20210	0.57	+0.7
2,345,164	+		BBR_RS20210	0.58	-0.4
2,345,177	-		BBR_RS20210	0.62	+1.0
2,345,183	-		BBR_RS20210	0.63	+0.4
2,345,233	+		BBR_RS20210	0.76	+0.3
2,345,256	+		BBR_RS20210	0.82	-0.0
2,345,260	-		BBR_RS20210	0.83	+0.1
2,345,266	+		BBR_RS20210	0.84	-0.2
2,345,268	-		BBR_RS20210	0.85	+0.4
2,345,270	-		BBR_RS20210	0.85	-0.5
2,345,282	+		BBR_RS20210	0.88	+0.8
2,345,282	+		BBR_RS20210	0.88	-0.1
2,345,282	+		BBR_RS20210	0.88	-0.3
2,345,288	+		BBR_RS20210	0.90	+0.2
2,345,288	+		BBR_RS20210	0.90	-0.9
2,345,290	-				+0.1
2,345,290	-				+0.1
2,345,296	-				-0.3
2,345,296	-				+0.2
2,345,306	-				+0.3
2,345,311	+				-1.7
2,345,311	+				+0.7
2,345,311	+				-0.8
2,345,313	+				-0.1
2,345,319	-				-1.5
2,345,319	-				+0.4
2,345,319	-				+0.9
2,345,326	-				-0.1
2,345,332	+				-0.4
2,345,334	+				+0.1
2,345,346	-				+0.4
2,345,346	-				-0.5
2,345,353	-				-0.4
2,345,362	+				+0.4
2,345,370	-				+0.2
2,345,380	+				+0.5
2,345,383	+				-0.6
2,345,388	+				-1.6
2,345,396	-				+1.0
2,345,396	-				-1.1
2,345,396	-				-0.3
2,345,396	-				+1.4
2,345,396	-				-0.2
2,345,396	-				+0.2
2,345,449	-				+0.6
2,345,456	+				-0.2
2,345,470	+				-0.7
2,345,470	+				-0.3
2,345,474	-				+0.2
2,345,474	-				+0.7
2,345,511	-				+0.0
2,345,513	-				+0.2
2,345,519	+				-0.7
2,345,528	-				-0.0
2,345,528	-				+0.7
2,345,530	-				+0.3
2,345,530	-				-0.5
2,345,535	+				+0.1
2,345,535	+				+0.8
2,345,535	+				+0.3
2,345,535	+				-0.5
2,345,543	-				+2.8
2,345,553	-				-0.2
2,345,577	-		BBR_RS20215	0.11	+0.3
2,345,579	+		BBR_RS20215	0.11	-0.5
2,345,587	-		BBR_RS20215	0.11	+0.4
2,345,587	-		BBR_RS20215	0.11	-0.0
2,345,599	+		BBR_RS20215	0.12	-0.2
2,345,647	+		BBR_RS20215	0.14	-0.2
2,345,661	+		BBR_RS20215	0.15	+0.5
2,345,662	+		BBR_RS20215	0.15	-0.6
2,345,662	+		BBR_RS20215	0.15	+1.1
2,345,663	+		BBR_RS20215	0.15	+0.7
2,345,670	-		BBR_RS20215	0.15	+0.3
2,345,670	-		BBR_RS20215	0.15	+0.6
2,345,679	+		BBR_RS20215	0.16	-0.6
2,345,684	+		BBR_RS20215	0.16	+1.3
2,345,687	-		BBR_RS20215	0.16	+0.1
2,345,687	-		BBR_RS20215	0.16	+3.3
2,345,691	+		BBR_RS20215	0.16	+0.2
2,345,691	+		BBR_RS20215	0.16	+1.0
2,345,691	+		BBR_RS20215	0.16	+0.9
2,345,696	+		BBR_RS20215	0.17	+0.4
2,345,696	+		BBR_RS20215	0.17	+0.8
2,345,696	+		BBR_RS20215	0.17	-0.1
2,345,699	-		BBR_RS20215	0.17	+0.5
2,345,723	-		BBR_RS20215	0.18	+0.6
2,345,730	+		BBR_RS20215	0.18	+0.7
2,345,741	-		BBR_RS20215	0.19	+0.6
2,345,741	-		BBR_RS20215	0.19	+0.7
2,345,741	-		BBR_RS20215	0.19	+0.5
2,345,748	-		BBR_RS20215	0.19	-0.1
2,345,756	-		BBR_RS20215	0.20	-0.6
2,345,765	+		BBR_RS20215	0.20	+1.0
2,345,765	+		BBR_RS20215	0.20	-0.5
2,345,765	+		BBR_RS20215	0.20	-1.0
2,345,765	-		BBR_RS20215	0.20	+0.4
2,345,772	+		BBR_RS20215	0.20	+0.1
2,345,772	+		BBR_RS20215	0.20	+0.2
2,345,772	+		BBR_RS20215	0.20	+0.4
2,345,773	-		BBR_RS20215	0.20	+0.5
2,345,775	-		BBR_RS20215	0.21	+0.8
2,345,775	-		BBR_RS20215	0.21	-0.2
2,345,775	-		BBR_RS20215	0.21	+0.0
2,345,777	+		BBR_RS20215	0.21	-0.9
2,345,785	-		BBR_RS20215	0.21	+0.2
2,345,786	+		BBR_RS20215	0.21	+0.2
2,345,801	-		BBR_RS20215	0.22	-0.7
2,345,812	-		BBR_RS20215	0.22	-0.9
2,345,836	+		BBR_RS20215	0.23	-0.2
2,345,846	+		BBR_RS20215	0.24	+0.1
2,345,853	+		BBR_RS20215	0.24	+0.6
2,345,853	+		BBR_RS20215	0.24	-0.1
2,345,876	+		BBR_RS20215	0.25	-0.0
2,345,919	+		BBR_RS20215	0.27	-0.7
2,345,924	+		BBR_RS20215	0.28	+1.0
2,345,937	-		BBR_RS20215	0.28	+3.1
2,345,941	-		BBR_RS20215	0.29	-0.6
2,345,948	+		BBR_RS20215	0.29	+0.5
2,345,958	+		BBR_RS20215	0.29	-0.6
2,345,958	+		BBR_RS20215	0.29	-0.1
2,345,966	-		BBR_RS20215	0.30	+0.0
2,345,968	-		BBR_RS20215	0.30	+0.4
2,345,968	-		BBR_RS20215	0.30	+1.2
2,345,976	-		BBR_RS20215	0.30	+0.6
2,345,976	-		BBR_RS20215	0.30	+0.3
2,345,976	-		BBR_RS20215	0.30	-0.0
2,345,990	+		BBR_RS20215	0.31	+0.4
2,345,994	+		BBR_RS20215	0.31	-2.0
2,345,995	+		BBR_RS20215	0.31	-1.1
2,346,001	+		BBR_RS20215	0.31	-0.1
2,346,023	-		BBR_RS20215	0.33	+0.5
2,346,028	-		BBR_RS20215	0.33	+0.6
2,346,030	+		BBR_RS20215	0.33	+0.6
2,346,038	+		BBR_RS20215	0.33	+1.2
2,346,046	-		BBR_RS20215	0.34	+0.3
2,346,048	-		BBR_RS20215	0.34	+0.3
2,346,051	+		BBR_RS20215	0.34	-0.3
2,346,054	-		BBR_RS20215	0.34	+1.1
2,346,056	+		BBR_RS20215	0.34	-0.1
2,346,071	-		BBR_RS20215	0.35	-0.4
2,346,071	-		BBR_RS20215	0.35	+0.1
2,346,078	-		BBR_RS20215	0.35	+0.1
2,346,091	-		BBR_RS20215	0.36	+0.2
2,346,093	+		BBR_RS20215	0.36	+0.4
2,346,096	+		BBR_RS20215	0.36	+1.2
2,346,104	-		BBR_RS20215	0.36	+1.1
2,346,106	-		BBR_RS20215	0.37	-0.1
2,346,115	+		BBR_RS20215	0.37	+0.3
2,346,115	+		BBR_RS20215	0.37	-0.7
2,346,120	+		BBR_RS20215	0.37	-0.0
2,346,123	-		BBR_RS20215	0.37	-3.1
2,346,129	-		BBR_RS20215	0.38	-0.4
2,346,130	+		BBR_RS20215	0.38	+0.3
2,346,135	-		BBR_RS20215	0.38	+0.3
2,346,147	+		BBR_RS20215	0.38	+0.8
2,346,155	+		BBR_RS20215	0.39	-0.6
2,346,155	+		BBR_RS20215	0.39	+0.0
2,346,163	-		BBR_RS20215	0.39	+0.2
2,346,163	-		BBR_RS20215	0.39	-0.1
2,346,165	-		BBR_RS20215	0.39	+1.2
2,346,174	+		BBR_RS20215	0.40	+0.5
2,346,174	+		BBR_RS20215	0.40	+0.2
2,346,174	+		BBR_RS20215	0.40	+0.2
2,346,174	+		BBR_RS20215	0.40	-0.9
2,346,174	+		BBR_RS20215	0.40	-0.9
2,346,174	+		BBR_RS20215	0.40	-1.0
2,346,182	-		BBR_RS20215	0.40	+0.5
2,346,182	-		BBR_RS20215	0.40	+0.4
2,346,182	-		BBR_RS20215	0.40	-0.3
2,346,182	-		BBR_RS20215	0.40	+0.3
2,346,182	-		BBR_RS20215	0.40	+1.4
2,346,182	-		BBR_RS20215	0.40	-0.1
2,346,182	-		BBR_RS20215	0.40	+0.0
2,346,201	+		BBR_RS20215	0.41	-0.3
2,346,227	+		BBR_RS20215	0.42	+0.1
2,346,230	-		BBR_RS20215	0.42	+0.2
2,346,235	-		BBR_RS20215	0.43	+0.4
2,346,235	-		BBR_RS20215	0.43	+0.1
2,346,242	+		BBR_RS20215	0.43	-0.1
2,346,242	-		BBR_RS20215	0.43	-0.8
2,346,245	-		BBR_RS20215	0.43	-0.0
2,346,245	-		BBR_RS20215	0.43	+0.4
2,346,250	-		BBR_RS20215	0.43	-0.1
2,346,258	-		BBR_RS20215	0.44	-0.1
2,346,258	-		BBR_RS20215	0.44	+0.2
2,346,258	-		BBR_RS20215	0.44	+0.5
2,346,258	-		BBR_RS20215	0.44	+0.8
2,346,266	+		BBR_RS20215	0.44	-1.0
2,346,266	+		BBR_RS20215	0.44	+0.4
2,346,272	-		BBR_RS20215	0.45	-0.4
2,346,286	+		BBR_RS20215	0.45	+0.2
2,346,286	+		BBR_RS20215	0.45	+0.5
2,346,294	-		BBR_RS20215	0.46	-0.2
2,346,294	-		BBR_RS20215	0.46	+0.8
2,346,296	+		BBR_RS20215	0.46	+0.1
2,346,296	+		BBR_RS20215	0.46	+0.1
2,346,304	+		BBR_RS20215	0.46	+0.7
2,346,312	-		BBR_RS20215	0.46	-0.8
2,346,321	-		BBR_RS20215	0.47	-0.2
2,346,326	-		BBR_RS20215	0.47	+0.4