Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20105

Experiment: Recovery broth with Amoxicillin 0.003 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Amoxicillin 0.003 mM
2,311,234	+		BBR_RS20100	0.64	+0.1
2,311,290	+		BBR_RS20100	0.66	-0.1
2,311,295	+		BBR_RS20100	0.66	+1.1
2,311,332	+		BBR_RS20100	0.67	+1.3
2,311,332	+		BBR_RS20100	0.67	+2.0
2,311,339	+		BBR_RS20100	0.68	+0.7
2,311,357	-		BBR_RS20100	0.68	+0.4
2,311,388	+		BBR_RS20100	0.69	+0.6
2,311,417	+		BBR_RS20100	0.70	+0.6
2,311,417	+		BBR_RS20100	0.70	+0.5
2,311,417	+		BBR_RS20100	0.70	+0.0
2,311,424	+		BBR_RS20100	0.71	+0.5
2,311,425	+		BBR_RS20100	0.71	+1.4
2,311,425	-		BBR_RS20100	0.71	+0.7
2,311,432	-		BBR_RS20100	0.71	+0.2
2,311,432	-		BBR_RS20100	0.71	+0.2
2,311,432	-		BBR_RS20100	0.71	+1.7
2,311,469	+		BBR_RS20100	0.72	+0.2
2,311,474	-		BBR_RS20100	0.73	+0.3
2,311,474	-		BBR_RS20100	0.73	-0.2
2,311,543	-		BBR_RS20100	0.75	+1.5
2,311,551	-		BBR_RS20100	0.75	+1.3
2,311,562	+		BBR_RS20100	0.76	+0.9
2,311,570	-		BBR_RS20100	0.76	+0.8
2,311,570	-		BBR_RS20100	0.76	+0.6
2,311,576	-		BBR_RS20100	0.76	+0.8
2,311,584	-		BBR_RS20100	0.77	+0.3
2,311,586	+		BBR_RS20100	0.77	+1.0
2,311,586	+		BBR_RS20100	0.77	+1.1
2,311,594	+		BBR_RS20100	0.77	+1.3
2,311,594	+		BBR_RS20100	0.77	+1.5
2,311,594	+		BBR_RS20100	0.77	+0.6
2,311,594	-		BBR_RS20100	0.77	+1.0
2,311,595	-		BBR_RS20100	0.77	+0.6
2,311,596	+		BBR_RS20100	0.77	+0.9
2,311,602	-		BBR_RS20100	0.77	+1.4
2,311,602	-		BBR_RS20100	0.77	-0.8
2,311,615	-		BBR_RS20100	0.78	+0.6
2,311,623	-		BBR_RS20100	0.78	+0.4
2,311,640	-		BBR_RS20100	0.79	+0.3
2,311,653	-		BBR_RS20100	0.79	+0.1
2,311,662	-		BBR_RS20100	0.79	+0.1
2,311,662	-		BBR_RS20100	0.79	+0.8
2,311,664	+		BBR_RS20100	0.79	+0.5
2,311,667	-		BBR_RS20100	0.80	+0.1
2,311,670	-		BBR_RS20100	0.80	+2.1
2,311,676	+		BBR_RS20100	0.80	+0.3
2,311,679	+		BBR_RS20100	0.80	+0.7
2,311,687	-		BBR_RS20100	0.80	-0.7
2,311,695	+		BBR_RS20100	0.81	+0.5
2,311,700	+		BBR_RS20100	0.81	-1.0
2,311,708	-		BBR_RS20100	0.81	+1.0
2,311,721	-		BBR_RS20100	0.82	-0.2
2,311,721	-		BBR_RS20100	0.82	-1.1
2,311,726	-		BBR_RS20100	0.82	+0.6
2,311,736	-		BBR_RS20100	0.82	+2.1
2,311,753	-		BBR_RS20100	0.83	+0.9
2,311,763	+		BBR_RS20100	0.83	+1.4
2,311,803	+		BBR_RS20100	0.84	+0.8
2,311,823	+		BBR_RS20100	0.85	+0.9
2,311,828	+		BBR_RS20100	0.85	-0.6
2,311,836	-		BBR_RS20100	0.86	+0.2
2,311,838	-		BBR_RS20100	0.86	+0.4
2,311,838	-		BBR_RS20100	0.86	+1.3
2,311,869	-		BBR_RS20100	0.87	-0.1
2,311,893	-		BBR_RS20100	0.88	+0.3
2,311,958	-				+1.4
2,311,958	-				-0.2
2,311,958	-				+1.1
2,311,979	-				+1.0
2,311,985	+				-1.6
2,312,008	+				+0.5
2,312,023	-				-0.1
2,312,028	+				+0.0
2,312,028	+				-0.5
2,312,036	-				+0.4
2,312,036	-				+0.7
2,312,039	+				+0.3
2,312,047	+				-0.6
2,312,061	-				-0.5
2,312,071	-				+0.7
2,312,082	+				+0.5
2,312,093	-				+0.4
2,312,131	-				+0.4
2,312,132	+				+1.1
2,312,181	+				+0.2
2,312,181	+				-0.0
2,312,198	+				+1.6
2,312,213	+				+0.8
2,312,218	-				+0.4
2,312,218	-				+0.6
2,312,223	+				-0.4
2,312,223	-				-1.4
2,312,238	+				-0.0
2,312,264	-				-0.1
2,312,265	+				+0.9
2,312,268	-				+0.0
2,312,277	+				+0.2
2,312,277	+				+0.2
2,312,277	+				+1.0
2,312,311	-				+0.4
2,312,324	+				+0.6
2,312,332	-				+0.8
2,312,333	+				-0.6
2,312,343	-				+0.7
2,312,343	-				-1.2
2,312,360	-				+0.3
2,312,360	-				-0.0
2,312,360	-				-0.0
2,312,360	-				+0.6
2,312,371	+				+0.2
2,312,379	-				+0.7
2,312,379	-				+0.3
2,312,385	-				+0.7
2,312,404	+				-0.3
2,312,404	+				+0.3
2,312,411	+				-0.1
2,312,411	+				-0.3
2,312,411	+				+0.5
2,312,411	+				+0.4
2,312,412	-				+0.5
2,312,419	-				+0.3
2,312,419	-				-0.2
2,312,456	+				+0.3
2,312,461	+		BBR_RS20105	0.10	+0.7
2,312,463	+		BBR_RS20105	0.10	+0.6
2,312,463	+		BBR_RS20105	0.10	+1.5
2,312,463	+		BBR_RS20105	0.10	+0.4
2,312,463	+		BBR_RS20105	0.10	+0.7
2,312,463	+		BBR_RS20105	0.10	+0.1
2,312,469	-		BBR_RS20105	0.10	-0.5
2,312,471	-		BBR_RS20105	0.11	+0.2
2,312,471	-		BBR_RS20105	0.11	+0.6
2,312,471	-		BBR_RS20105	0.11	+1.8
2,312,471	-		BBR_RS20105	0.11	+0.6
2,312,471	-		BBR_RS20105	0.11	+0.4
2,312,471	-		BBR_RS20105	0.11	+0.8
2,312,471	-		BBR_RS20105	0.11	+0.7
2,312,471	-		BBR_RS20105	0.11	+0.4
2,312,527	-		BBR_RS20105	0.13	+1.0
2,312,545	+		BBR_RS20105	0.14	+0.8
2,312,545	+		BBR_RS20105	0.14	+0.3
2,312,550	+		BBR_RS20105	0.14	+0.2
2,312,553	-		BBR_RS20105	0.14	+0.2
2,312,555	+		BBR_RS20105	0.14	+0.8
2,312,585	+		BBR_RS20105	0.15	+0.7
2,312,587	+		BBR_RS20105	0.15	+1.2
2,312,595	-		BBR_RS20105	0.16	+0.4
2,312,597	+		BBR_RS20105	0.16	+0.6
2,312,597	-		BBR_RS20105	0.16	+0.5
2,312,597	-		BBR_RS20105	0.16	+0.8
2,312,598	-		BBR_RS20105	0.16	+0.9
2,312,618	-		BBR_RS20105	0.17	-1.7
2,312,618	-		BBR_RS20105	0.17	+0.4
2,312,627	+		BBR_RS20105	0.17	-0.7
2,312,676	-		BBR_RS20105	0.19	+0.6
2,312,676	-		BBR_RS20105	0.19	+1.4
2,312,696	+		BBR_RS20105	0.20	+0.1
2,312,696	+		BBR_RS20105	0.20	+0.7
2,312,706	+		BBR_RS20105	0.21	-0.1
2,312,706	+		BBR_RS20105	0.21	+0.7
2,312,714	-		BBR_RS20105	0.21	+0.7
2,312,719	-		BBR_RS20105	0.21	+1.1
2,312,737	-		BBR_RS20105	0.22	-0.5
2,312,747	-		BBR_RS20105	0.22	+1.1
2,312,747	-		BBR_RS20105	0.22	+1.1
2,312,756	+		BBR_RS20105	0.23	-1.0
2,312,765	+		BBR_RS20105	0.23	-0.4
2,312,767	+		BBR_RS20105	0.23	+0.6
2,312,773	-		BBR_RS20105	0.23	-0.1
2,312,775	-		BBR_RS20105	0.24	+0.7
2,312,775	-		BBR_RS20105	0.24	+0.4
2,312,775	-		BBR_RS20105	0.24	-0.9
2,312,809	-		BBR_RS20105	0.25	-0.1
2,312,809	-		BBR_RS20105	0.25	+1.2
2,312,825	+		BBR_RS20105	0.26	+0.1
2,312,827	-		BBR_RS20105	0.26	+1.2
2,312,827	-		BBR_RS20105	0.26	+1.5
2,312,831	+		BBR_RS20105	0.26	+0.1
2,312,846	-		BBR_RS20105	0.27	+0.1
2,312,892	-		BBR_RS20105	0.29	+0.2
2,312,894	-		BBR_RS20105	0.29	+1.0
2,312,894	-		BBR_RS20105	0.29	+0.2
2,312,934	+		BBR_RS20105	0.30	-1.8
2,312,934	+		BBR_RS20105	0.30	-1.4
2,312,956	-		BBR_RS20105	0.31	+0.1
2,312,990	+		BBR_RS20105	0.33	+0.2
2,312,990	+		BBR_RS20105	0.33	+0.9
2,312,998	-		BBR_RS20105	0.33	+0.2
2,312,998	-		BBR_RS20105	0.33	+0.4
2,313,016	+		BBR_RS20105	0.34	+0.5
2,313,033	-		BBR_RS20105	0.35	+1.2
2,313,033	-		BBR_RS20105	0.35	+1.1
2,313,034	+		BBR_RS20105	0.35	-0.2
2,313,042	+		BBR_RS20105	0.35	-0.3
2,313,045	+		BBR_RS20105	0.35	+0.9
2,313,049	+		BBR_RS20105	0.35	+0.3
2,313,053	-		BBR_RS20105	0.35	+0.8
2,313,055	+		BBR_RS20105	0.35	+1.7
2,313,070	+		BBR_RS20105	0.36	+0.7
2,313,070	+		BBR_RS20105	0.36	+0.0
2,313,070	-		BBR_RS20105	0.36	+0.1
2,313,077	+		BBR_RS20105	0.36	+1.0
2,313,088	+		BBR_RS20105	0.37	+0.6
2,313,088	+		BBR_RS20105	0.37	+0.6
2,313,149	-		BBR_RS20105	0.39	+0.1
2,313,184	+		BBR_RS20105	0.41	+0.6
2,313,184	+		BBR_RS20105	0.41	+0.2
2,313,196	+		BBR_RS20105	0.41	+0.6
2,313,206	-		BBR_RS20105	0.42	+0.5
2,313,226	+		BBR_RS20105	0.43	+0.2
2,313,226	+		BBR_RS20105	0.43	-0.1
2,313,228	+		BBR_RS20105	0.43	-0.7
2,313,234	-		BBR_RS20105	0.43	+0.2
2,313,246	+		BBR_RS20105	0.44	+1.0
2,313,248	+		BBR_RS20105	0.44	+1.0
2,313,339	+		BBR_RS20105	0.48	-0.0
2,313,344	+		BBR_RS20105	0.48	+0.5
2,313,349	+		BBR_RS20105	0.48	+0.9
2,313,349	+		BBR_RS20105	0.48	+1.6
2,313,367	+		BBR_RS20105	0.49	+0.4
2,313,367	+		BBR_RS20105	0.49	+0.0
2,313,367	+		BBR_RS20105	0.49	+0.3
2,313,386	+		BBR_RS20105	0.50	+0.8
2,313,386	-		BBR_RS20105	0.50	+0.9
2,313,394	+		BBR_RS20105	0.50	+0.4
2,313,401	+		BBR_RS20105	0.50	+1.1
2,313,402	-		BBR_RS20105	0.50	+0.7
2,313,428	+		BBR_RS20105	0.51	+1.4
2,313,434	-		BBR_RS20105	0.52	+0.8
2,313,436	+		BBR_RS20105	0.52	+0.1
2,313,496	+		BBR_RS20105	0.54	+0.4
2,313,517	-		BBR_RS20105	0.55	+1.0
2,313,538	+		BBR_RS20105	0.56	-0.4
2,313,538	+		BBR_RS20105	0.56	+0.7
2,313,538	+		BBR_RS20105	0.56	+0.4
2,313,546	-		BBR_RS20105	0.56	-0.3
2,313,557	+		BBR_RS20105	0.57	+0.0
2,313,558	+		BBR_RS20105	0.57	-0.3
2,313,558	+		BBR_RS20105	0.57	-0.6
2,313,559	+		BBR_RS20105	0.57	+0.3
2,313,566	-		BBR_RS20105	0.57	+0.5
2,313,588	+		BBR_RS20105	0.58	+0.6
2,313,588	+		BBR_RS20105	0.58	+0.6
2,313,596	-		BBR_RS20105	0.59	+1.2
2,313,596	-		BBR_RS20105	0.59	+0.4
2,313,596	-		BBR_RS20105	0.59	+0.3
2,313,596	-		BBR_RS20105	0.59	+0.2
2,313,598	+		BBR_RS20105	0.59	+0.0
2,313,629	-		BBR_RS20105	0.60	+0.7
2,313,630	+		BBR_RS20105	0.60	+1.3
2,313,630	+		BBR_RS20105	0.60	+0.6
2,313,637	-		BBR_RS20105	0.60	+0.4
2,313,673	+		BBR_RS20105	0.62	+0.5
2,313,680	+		BBR_RS20105	0.62	+0.9
2,313,681	-		BBR_RS20105	0.62	+0.1
2,313,692	+		BBR_RS20105	0.63	+1.0
2,313,699	+		BBR_RS20105	0.63	+1.1
2,313,699	+		BBR_RS20105	0.63	-0.2
2,313,699	+		BBR_RS20105	0.63	+0.2
2,313,699	+		BBR_RS20105	0.63	+0.2
2,313,702	-		BBR_RS20105	0.63	+0.7
2,313,704	+		BBR_RS20105	0.63	+0.6
2,313,707	-		BBR_RS20105	0.63	+0.6
2,313,732	-		BBR_RS20105	0.64	+0.4
2,313,751	-		BBR_RS20105	0.65	+0.1
2,313,756	-		BBR_RS20105	0.65	+1.4
2,313,782	+		BBR_RS20105	0.67	+0.7
2,313,782	+		BBR_RS20105	0.67	+0.3
2,313,784	+		BBR_RS20105	0.67	+1.7
2,313,784	+		BBR_RS20105	0.67	+0.5
2,313,785	-		BBR_RS20105	0.67	+1.0
2,313,790	-		BBR_RS20105	0.67	-0.5
2,313,790	-		BBR_RS20105	0.67	+1.2
2,313,790	-		BBR_RS20105	0.67	+0.5
2,313,790	-		BBR_RS20105	0.67	+1.6
2,313,792	-		BBR_RS20105	0.67	-0.1
2,313,792	-		BBR_RS20105	0.67	+0.6
2,313,810	-		BBR_RS20105	0.68	+0.3
2,313,817	+		BBR_RS20105	0.68	-0.0
2,313,826	-		BBR_RS20105	0.68	+0.0
2,313,846	-		BBR_RS20105	0.69	+0.4
2,313,854	-		BBR_RS20105	0.70	-0.2
2,313,929	+		BBR_RS20105	0.73	+1.3
2,313,943	+		BBR_RS20105	0.73	+0.9
2,314,015	+		BBR_RS20105	0.76	+0.5
2,314,049	-		BBR_RS20105	0.78	+0.6
2,314,070	+		BBR_RS20105	0.79	+0.8
2,314,097	+		BBR_RS20105	0.80	+0.5
2,314,115	+		BBR_RS20105	0.81	+1.5
2,314,120	-		BBR_RS20105	0.81	+1.0
2,314,123	-		BBR_RS20105	0.81	-0.8
2,314,125	-		BBR_RS20105	0.81	+1.0
2,314,131	-		BBR_RS20105	0.81	-1.2
2,314,131	-		BBR_RS20105	0.81	-1.0
2,314,133	-		BBR_RS20105	0.82	+0.5
2,314,138	-		BBR_RS20105	0.82	+0.8
2,314,139	-		BBR_RS20105	0.82	+0.5
2,314,149	-		BBR_RS20105	0.82	+0.6
2,314,205	-		BBR_RS20105	0.85	+1.4
2,314,212	-		BBR_RS20105	0.85	+1.6
2,314,215	-		BBR_RS20105	0.85	-0.0
2,314,232	+		BBR_RS20105	0.86	-0.5
2,314,239	+		BBR_RS20105	0.86	+0.5
2,314,239	+		BBR_RS20105	0.86	+0.5
2,314,239	+		BBR_RS20105	0.86	-0.2
2,314,244	+		BBR_RS20105	0.86	+0.4
2,314,245	-		BBR_RS20105	0.86	-0.2
2,314,247	-		BBR_RS20105	0.86	+1.0
2,314,247	-		BBR_RS20105	0.86	-0.1
2,314,247	-		BBR_RS20105	0.86	+0.4
2,314,247	-		BBR_RS20105	0.86	+0.2
2,314,247	-		BBR_RS20105	0.86	-0.2
2,314,247	-		BBR_RS20105	0.86	+0.0
2,314,247	-		BBR_RS20105	0.86	-0.1
2,314,247	-		BBR_RS20105	0.86	-0.2
2,314,247	-		BBR_RS20105	0.86	+0.6
2,314,247	-		BBR_RS20105	0.86	+0.7
2,314,247	-		BBR_RS20105	0.86	-1.5
2,314,259	-		BBR_RS20105	0.87	-0.4
2,314,380	+				+0.6
2,314,380	+				+0.6
2,314,388	-				+0.8
2,314,424	-				-0.0
2,314,429	+				-2.1
2,314,451	-				+1.9
2,314,460	-				+0.5
2,314,495	+				+0.8
2,314,496	-				+0.8
2,314,496	-				-0.2
2,314,503	+				-0.3
2,314,508	+				-2.6
2,314,508	+				+0.2
2,314,511	-				+0.3
2,314,548	+				+0.6
2,314,556	-				+0.9
2,314,556	-				-0.3
2,314,607	+				-0.1
2,314,607	+				+0.8
2,314,615	-				-0.2
2,314,658	+				+0.9
2,314,658	+				+0.6
2,314,658	+				+1.3
2,314,665	+				+1.4
2,314,666	-				-0.1
2,314,666	-				+0.2
2,314,666	-				+0.0
2,314,666	-				-0.9
2,314,737	+				-0.4
2,314,737	+				-0.6
2,314,737	+				+0.3
2,314,742	+				+0.2
2,314,745	-				-0.6
2,314,745	-				+0.6
2,314,764	+		BBR_RS20545	0.16	-0.4
2,314,764	+		BBR_RS20545	0.16	-0.9
2,314,772	-		BBR_RS20545	0.19	+0.6
2,314,772	-		BBR_RS20545	0.19	-0.5
2,314,772	-		BBR_RS20545	0.19	+0.6
2,314,789	-		BBR_RS20545	0.26	+0.3
2,314,818	-		BBR_RS20545	0.37	-0.8
2,314,827	-		BBR_RS20545	0.41	-0.1
2,314,828	-		BBR_RS20545	0.41	+1.0
2,314,858	+		BBR_RS20545	0.53	-0.1
2,314,866	-		BBR_RS20545	0.56	-0.9
2,314,872	-		BBR_RS20545	0.59	+1.1
2,314,904	-		BBR_RS20545	0.71	+0.4
2,314,962	+				+0.6
2,314,962	-				+0.7
2,314,968	-				+0.5
2,314,968	-				+0.6
2,314,975	-				+0.2
2,315,045	-				+0.2