Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20065

Experiment: Recovery broth with Amoxicillin 0.003 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Amoxicillin 0.003 mM
2,301,296	+		BBR_RS20055	0.89	-0.7
2,301,308	+				+0.8
2,301,309	+				+0.1
2,301,310	-				-0.8
2,301,311	+				+0.2
2,301,316	-				-0.4
2,301,316	-				+0.0
2,301,322	-				+0.0
2,301,329	+				-0.1
2,301,354	-				-0.2
2,301,440	-				+0.8
2,301,444	+				+0.7
2,301,462	-				+0.6
2,301,475	+				+0.5
2,301,476	-				-0.8
2,301,480	+				+0.4
2,301,493	+				+1.4
2,301,493	+				+0.1
2,301,519	+				+0.0
2,301,550	-				+0.4
2,301,589	+		BBR_RS20060	0.14	+0.7
2,301,605	+		BBR_RS20060	0.17	-0.2
2,301,633	+		BBR_RS20060	0.22	+0.1
2,301,654	-		BBR_RS20060	0.25	+0.2
2,301,654	-		BBR_RS20060	0.25	+0.7
2,301,668	-		BBR_RS20060	0.27	+0.6
2,301,713	+		BBR_RS20060	0.35	-0.2
2,301,713	+		BBR_RS20060	0.35	+0.4
2,301,742	+		BBR_RS20060	0.40	-0.2
2,301,742	+		BBR_RS20060	0.40	-0.6
2,301,742	-		BBR_RS20060	0.40	+0.9
2,301,742	-		BBR_RS20060	0.40	-0.2
2,301,756	+		BBR_RS20060	0.42	+0.4
2,301,756	-		BBR_RS20060	0.42	-0.3
2,301,760	+		BBR_RS20060	0.43	-0.2
2,301,767	-		BBR_RS20060	0.44	+0.3
2,301,841	+		BBR_RS20060	0.56	+0.0
2,301,849	-		BBR_RS20060	0.57	+0.3
2,301,849	-		BBR_RS20060	0.57	-0.2
2,301,849	-		BBR_RS20060	0.57	-0.9
2,301,850	+		BBR_RS20060	0.57	-0.1
2,301,874	+		BBR_RS20060	0.61	+0.2
2,301,882	+		BBR_RS20060	0.63	+0.4
2,301,882	+		BBR_RS20060	0.63	+1.0
2,301,884	-		BBR_RS20060	0.63	+1.0
2,301,889	-		BBR_RS20060	0.64	-0.0
2,301,926	+		BBR_RS20060	0.70	+0.3
2,301,927	-		BBR_RS20060	0.70	+0.5
2,301,943	-		BBR_RS20060	0.73	+0.1
2,301,943	-		BBR_RS20060	0.73	+0.2
2,301,982	+		BBR_RS20060	0.79	-0.1
2,301,990	-		BBR_RS20060	0.81	+0.1
2,301,995	-		BBR_RS20060	0.81	-0.0
2,302,015	+		BBR_RS20060	0.85	+0.0
2,302,016	+		BBR_RS20060	0.85	-0.2
2,302,016	+		BBR_RS20060	0.85	+0.5
2,302,016	+		BBR_RS20060	0.85	-0.2
2,302,019	-		BBR_RS20060	0.85	+0.0
2,302,049	-				+0.2
2,302,066	-				-0.3
2,302,110	+				-1.3
2,302,110	+				+1.6
2,302,113	-				+0.4
2,302,117	+				-0.6
2,302,134	-				-0.3
2,302,139	+				+0.5
2,302,139	+				-0.0
2,302,139	+				-0.3
2,302,139	+				+0.1
2,302,162	+				+0.5
2,302,182	-				+0.3
2,302,187	-				+0.8
2,302,202	+				+0.6
2,302,203	-				+0.2
2,302,218	-				+1.0
2,302,221	+				+0.4
2,302,228	+				+0.7
2,302,269	-				+0.4
2,302,284	-				-0.8
2,302,284	-				-0.2
2,302,284	-				+0.2
2,302,284	-				+0.9
2,302,286	-				-0.0
2,302,286	-				-3.3
2,302,301	-				-0.2
2,302,352	-		BBR_RS20065	0.11	+0.2
2,302,352	-		BBR_RS20065	0.11	+1.1
2,302,364	+		BBR_RS20065	0.13	+0.3
2,302,429	-		BBR_RS20065	0.20	+0.5
2,302,429	-		BBR_RS20065	0.20	+0.4
2,302,429	-		BBR_RS20065	0.20	+0.9
2,302,429	-		BBR_RS20065	0.20	-0.4
2,302,456	-		BBR_RS20065	0.23	+2.9
2,302,484	+		BBR_RS20065	0.27	+0.4
2,302,591	-		BBR_RS20065	0.40	-0.2
2,302,592	-		BBR_RS20065	0.40	+0.8
2,302,612	-		BBR_RS20065	0.42	-1.0
2,302,612	-		BBR_RS20065	0.42	-0.2
2,302,612	-		BBR_RS20065	0.42	+0.0
2,302,640	-		BBR_RS20065	0.45	-0.2
2,302,641	-		BBR_RS20065	0.45	+1.4
2,302,646	-		BBR_RS20065	0.46	+0.5
2,302,657	-		BBR_RS20065	0.47	+0.1
2,302,665	-		BBR_RS20065	0.48	-0.3
2,302,665	-		BBR_RS20065	0.48	+0.3
2,302,666	+		BBR_RS20065	0.48	+0.4
2,302,666	+		BBR_RS20065	0.48	+0.4
2,302,671	+		BBR_RS20065	0.49	+0.5
2,302,674	-		BBR_RS20065	0.49	+0.6
2,302,679	+		BBR_RS20065	0.50	+0.8
2,302,682	+		BBR_RS20065	0.50	-0.1
2,302,682	+		BBR_RS20065	0.50	-0.2
2,302,690	-		BBR_RS20065	0.51	+0.7
2,302,706	+		BBR_RS20065	0.53	+1.9
2,302,706	+		BBR_RS20065	0.53	+1.1
2,302,706	+		BBR_RS20065	0.53	+0.5
2,302,716	+		BBR_RS20065	0.54	-0.1
2,302,724	-		BBR_RS20065	0.55	+0.5
2,302,724	-		BBR_RS20065	0.55	+0.2
2,302,724	-		BBR_RS20065	0.55	+0.7
2,302,730	+		BBR_RS20065	0.56	+0.4
2,302,758	+		BBR_RS20065	0.59	+1.0
2,302,758	+		BBR_RS20065	0.59	-0.0
2,302,758	+		BBR_RS20065	0.59	+1.0
2,302,766	+		BBR_RS20065	0.60	-0.1
2,302,766	+		BBR_RS20065	0.60	+0.2
2,302,766	-		BBR_RS20065	0.60	-0.6
2,302,766	-		BBR_RS20065	0.60	-0.2
2,302,774	-		BBR_RS20065	0.61	+0.3
2,302,774	-		BBR_RS20065	0.61	-0.0
2,302,774	-		BBR_RS20065	0.61	+0.2
2,302,774	-		BBR_RS20065	0.61	+0.2
2,302,774	-		BBR_RS20065	0.61	+0.9
2,302,829	-		BBR_RS20065	0.68	-0.0
2,302,842	+		BBR_RS20065	0.69	+0.6
2,302,842	+		BBR_RS20065	0.69	+0.2
2,302,864	-		BBR_RS20065	0.72	+0.9
2,302,877	-		BBR_RS20065	0.73	+0.1
2,302,886	+		BBR_RS20065	0.74	+0.8
2,302,896	-		BBR_RS20065	0.76	-0.8
2,302,900	+		BBR_RS20065	0.76	+0.3
2,302,904	-		BBR_RS20065	0.77	+0.6
2,302,908	-		BBR_RS20065	0.77	+0.7
2,302,908	-		BBR_RS20065	0.77	-0.1
2,302,908	-		BBR_RS20065	0.77	+0.5
2,302,929	-		BBR_RS20065	0.80	-0.4
2,302,950	+		BBR_RS20065	0.82	+0.5
2,302,983	+		BBR_RS20065	0.86	-0.1
2,303,010	-		BBR_RS20065	0.89	-1.1
2,303,016	-				+0.3
2,303,016	-				+0.5
2,303,016	-				+0.6
2,303,050	+				-0.1
2,303,055	+				-1.0
2,303,058	-				+0.4
2,303,063	-				+0.5
2,303,063	-				+1.0
2,303,063	-				-0.6
2,303,063	-				+0.4
2,303,068	-				-0.1
2,303,068	-				+0.5
2,303,068	-				-0.1
2,303,082	-				+0.2
2,303,085	-				+0.4
2,303,092	-				+0.8
2,303,092	-				+0.3
2,303,092	-				-1.4
2,303,092	-				+0.9
2,303,111	-				-0.7
2,303,128	+				+0.4
2,303,138	+				+0.3
2,303,138	+				+0.4
2,303,145	+				+0.4
2,303,152	+				+0.3
2,303,160	-				+1.1
2,303,172	+				+0.2
2,303,179	+				-0.8
2,303,179	+				-0.8
2,303,179	+				-0.5
2,303,187	-		BBR_RS20070	0.10	+0.4
2,303,187	-		BBR_RS20070	0.10	+0.2
2,303,187	-		BBR_RS20070	0.10	+0.1
2,303,187	-		BBR_RS20070	0.10	+0.6
2,303,187	-		BBR_RS20070	0.10	+0.3
2,303,187	-		BBR_RS20070	0.10	+0.1
2,303,189	+		BBR_RS20070	0.10	-0.1
2,303,207	+		BBR_RS20070	0.13	+1.1
2,303,214	+		BBR_RS20070	0.13	+0.0
2,303,231	-		BBR_RS20070	0.15	-0.4
2,303,243	-		BBR_RS20070	0.17	+0.9
2,303,246	+		BBR_RS20070	0.17	+0.1
2,303,262	-		BBR_RS20070	0.19	-1.4
2,303,272	+		BBR_RS20070	0.20	+0.5
2,303,272	+		BBR_RS20070	0.20	+0.4
2,303,272	+		BBR_RS20070	0.20	-0.6
2,303,272	+		BBR_RS20070	0.20	+0.3
2,303,272	+		BBR_RS20070	0.20	+0.4
2,303,280	-		BBR_RS20070	0.21	+0.6
2,303,280	-		BBR_RS20070	0.21	-0.3
2,303,280	-		BBR_RS20070	0.21	-0.1
2,303,280	-		BBR_RS20070	0.21	-0.0
2,303,280	-		BBR_RS20070	0.21	+1.0
2,303,280	-		BBR_RS20070	0.21	-0.7
2,303,280	-		BBR_RS20070	0.21	+0.7
2,303,280	-		BBR_RS20070	0.21	+0.2
2,303,289	+		BBR_RS20070	0.22	+0.5
2,303,297	-		BBR_RS20070	0.23	+0.4
2,303,303	+		BBR_RS20070	0.24	-1.3
2,303,303	+		BBR_RS20070	0.24	+0.8
2,303,311	-		BBR_RS20070	0.25	-1.2
2,303,311	-		BBR_RS20070	0.25	-0.3
2,303,311	-		BBR_RS20070	0.25	-2.6
2,303,335	-		BBR_RS20070	0.27	+0.9
2,303,342	-		BBR_RS20070	0.28	+0.6
2,303,345	-		BBR_RS20070	0.29	-0.3
2,303,349	-		BBR_RS20070	0.29	-0.2
2,303,349	-		BBR_RS20070	0.29	-0.3
2,303,401	-		BBR_RS20070	0.35	+0.7
2,303,410	+		BBR_RS20070	0.36	-0.1
2,303,426	-		BBR_RS20070	0.38	-1.1
2,303,518	+		BBR_RS20070	0.49	+0.8
2,303,535	-		BBR_RS20070	0.51	-0.2
2,303,535	-		BBR_RS20070	0.51	+0.1
2,303,566	+		BBR_RS20070	0.55	+0.9
2,303,566	+		BBR_RS20070	0.55	+0.7
2,303,589	-		BBR_RS20070	0.57	-0.6
2,303,594	-		BBR_RS20070	0.58	+0.8
2,303,600	-		BBR_RS20070	0.58	+0.6
2,303,625	+		BBR_RS20070	0.61	+1.4
2,303,645	+		BBR_RS20070	0.64	-1.2
2,303,648	-		BBR_RS20070	0.64	+0.9
2,303,650	+		BBR_RS20070	0.64	+0.8
2,303,653	-		BBR_RS20070	0.65	-0.1
2,303,653	-		BBR_RS20070	0.65	-0.1
2,303,670	-		BBR_RS20070	0.67	+0.0
2,303,672	+		BBR_RS20070	0.67	+0.0
2,303,672	+		BBR_RS20070	0.67	+0.2
2,303,672	+		BBR_RS20070	0.67	-0.8
2,303,680	-		BBR_RS20070	0.68	+1.3
2,303,680	-		BBR_RS20070	0.68	+0.2
2,303,680	-		BBR_RS20070	0.68	-0.3
2,303,687	-		BBR_RS20070	0.69	-0.3
2,303,711	-		BBR_RS20070	0.71	+0.4
2,303,723	-		BBR_RS20070	0.73	+1.0
2,303,723	-		BBR_RS20070	0.73	+0.9
2,303,724	+		BBR_RS20070	0.73	-2.6
2,303,732	-		BBR_RS20070	0.74	+0.7
2,303,732	-		BBR_RS20070	0.74	+0.8
2,303,732	-		BBR_RS20070	0.74	-0.3
2,303,764	-		BBR_RS20070	0.78	-0.3
2,303,795	-		BBR_RS20070	0.81	-0.8
2,303,845	-		BBR_RS20070	0.87	-0.3
2,303,863	-		BBR_RS20070	0.89	+0.1
2,303,901	-				+0.1
2,303,920	-				+0.1
2,303,920	-				-3.0
2,303,949	+				-0.7
2,303,957	-				+0.3
2,303,957	-				-0.5
2,303,980	+				+0.9
2,303,985	+				-0.9
2,303,985	+				+0.6
2,303,985	+				+0.9
2,303,988	-				+0.1
2,303,993	-				-1.2
2,303,998	-				+0.2
2,304,011	+				-0.2
2,304,019	-				+0.2
2,304,068	+				+0.1
2,304,071	-				-0.3
2,304,076	-				-0.2
2,304,076	-				-1.3
2,304,076	-				-0.1
2,304,076	-				+0.4
2,304,076	-				+0.2
2,304,090	+				+1.1
2,304,098	-				-0.8