Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18510

Experiment: Recovery broth with Amoxicillin 0.003 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Amoxicillin 0.003 mM
1,939,931	+		BBR_RS18500	0.83	+0.8
1,939,936	+		BBR_RS18500	0.84	-0.3
1,939,936	+		BBR_RS18500	0.84	+0.1
1,939,936	+		BBR_RS18500	0.84	-0.2
1,939,941	+		BBR_RS18500	0.84	+0.2
1,939,941	+		BBR_RS18500	0.84	+0.6
1,939,941	+		BBR_RS18500	0.84	+0.0
1,939,944	-		BBR_RS18500	0.84	-0.2
1,939,944	-		BBR_RS18500	0.84	+0.1
1,939,944	-		BBR_RS18500	0.84	+0.7
1,939,968	+		BBR_RS18500	0.85	-2.4
1,939,984	+		BBR_RS18500	0.86	+0.2
1,940,008	+		BBR_RS18500	0.87	+0.7
1,940,021	-		BBR_RS18500	0.88	-0.7
1,940,048	+		BBR_RS18500	0.89	+0.5
1,940,051	-		BBR_RS18500	0.89	-0.4
1,940,090	+				+0.5
1,940,113	-				+1.0
1,940,127	+				-0.7
1,940,144	-				+0.1
1,940,156	+				-0.1
1,940,156	+				+0.3
1,940,178	+				+0.4
1,940,184	-				-0.0
1,940,192	+				+0.8
1,940,198	+				-0.4
1,940,206	-				-0.4
1,940,206	-				-0.6
1,940,227	+				-0.4
1,940,235	-				+0.2
1,940,235	-				+0.6
1,940,248	-				+0.2
1,940,369	-				+0.2
1,940,378	+				+0.3
1,940,412	-				-0.3
1,940,436	+				-0.1
1,940,450	-				+0.6
1,940,490	-				-0.7
1,940,492	-				+0.2
1,940,495	-				-0.1
1,940,528	-				-0.5
1,940,540	+		BBR_RS21050	0.14	-0.0
1,940,540	+		BBR_RS21050	0.14	-0.3
1,940,553	+		BBR_RS21050	0.21	+1.3
1,940,554	+		BBR_RS21050	0.22	-0.6
1,940,574	+		BBR_RS21050	0.32	-0.8
1,940,584	-		BBR_RS21050	0.38	+0.3
1,940,604	-		BBR_RS21050	0.48	-0.8
1,940,621	-		BBR_RS21050	0.58	+0.3
1,940,628	+				-0.5
1,940,658	+				+0.7
1,940,660	-				-1.0
1,940,681	+				-1.1
1,940,681	+				+0.4
1,940,681	+				-0.3
1,940,687	-				-0.2
1,940,689	-				-0.2
1,940,778	-		BBR_RS21055	0.72	-0.7
1,940,804	+		BBR_RS21055	0.84	-0.4
1,940,812	-		BBR_RS21055	0.88	+1.8
1,940,812	-		BBR_RS21055	0.88	+1.0
1,940,879	+				-0.3
1,940,886	+				-0.3
1,940,894	-				-0.3
1,940,897	+				+0.7
1,940,963	-				+0.6
1,940,963	-				-0.1
1,940,967	+				+0.4
1,940,980	-				+0.1
1,941,026	+				+0.7
1,941,032	-				-0.1
1,941,034	-				-0.3
1,941,034	-				+0.3
1,941,034	-				-0.9
1,941,111	-		BBR_RS18510	0.15	+0.7
1,941,112	+		BBR_RS18510	0.15	+0.5
1,941,122	+		BBR_RS18510	0.16	-0.8
1,941,131	-		BBR_RS18510	0.17	-0.0
1,941,135	+		BBR_RS18510	0.17	+1.5
1,941,143	-		BBR_RS18510	0.18	+0.7
1,941,171	-		BBR_RS18510	0.20	+1.1
1,941,185	-		BBR_RS18510	0.21	+0.2
1,941,249	+		BBR_RS18510	0.25	+0.5
1,941,259	+		BBR_RS18510	0.26	+0.3
1,941,259	+		BBR_RS18510	0.26	-0.3
1,941,274	-		BBR_RS18510	0.27	+0.7
1,941,327	-		BBR_RS18510	0.31	+0.3
1,941,373	-		BBR_RS18510	0.34	-0.1
1,941,378	+		BBR_RS18510	0.35	+0.2
1,941,385	+		BBR_RS18510	0.35	+0.9
1,941,402	+		BBR_RS18510	0.36	+0.5
1,941,420	-		BBR_RS18510	0.38	-1.2
1,941,452	-		BBR_RS18510	0.40	-0.6
1,941,457	+		BBR_RS18510	0.40	+1.5
1,941,457	+		BBR_RS18510	0.40	+1.6
1,941,465	-		BBR_RS18510	0.41	-1.1
1,941,487	+		BBR_RS18510	0.43	-0.4
1,941,503	+		BBR_RS18510	0.44	+0.2
1,941,523	-		BBR_RS18510	0.45	+1.4
1,941,526	+		BBR_RS18510	0.46	-0.0
1,941,540	+		BBR_RS18510	0.47	+0.3
1,941,543	+		BBR_RS18510	0.47	-0.2
1,941,559	-		BBR_RS18510	0.48	+0.9
1,941,574	+		BBR_RS18510	0.49	-1.1
1,941,591	-		BBR_RS18510	0.50	+0.7
1,941,591	-		BBR_RS18510	0.50	+0.2
1,941,593	+		BBR_RS18510	0.50	-0.2
1,941,593	+		BBR_RS18510	0.50	+0.9
1,941,601	-		BBR_RS18510	0.51	-0.1
1,941,612	+		BBR_RS18510	0.52	-0.7
1,941,620	-		BBR_RS18510	0.52	+0.6
1,941,622	+		BBR_RS18510	0.53	+0.2
1,941,657	+		BBR_RS18510	0.55	-0.0
1,941,665	-		BBR_RS18510	0.56	+1.3
1,941,665	-		BBR_RS18510	0.56	-0.4
1,941,667	+		BBR_RS18510	0.56	+1.0
1,941,667	+		BBR_RS18510	0.56	-0.3
1,941,667	+		BBR_RS18510	0.56	+0.3
1,941,667	+		BBR_RS18510	0.56	+0.3
1,941,667	+		BBR_RS18510	0.56	-0.4
1,941,667	+		BBR_RS18510	0.56	-0.1
1,941,667	+		BBR_RS18510	0.56	-2.3
1,941,667	+		BBR_RS18510	0.56	-0.2
1,941,667	+		BBR_RS18510	0.56	+0.3
1,941,667	+		BBR_RS18510	0.56	+0.7
1,941,675	-		BBR_RS18510	0.56	+0.3
1,941,675	-		BBR_RS18510	0.56	+1.1
1,941,675	-		BBR_RS18510	0.56	+1.6
1,941,675	-		BBR_RS18510	0.56	-0.3
1,941,675	-		BBR_RS18510	0.56	+1.1
1,941,675	-		BBR_RS18510	0.56	-0.1
1,941,675	-		BBR_RS18510	0.56	+0.6
1,941,675	-		BBR_RS18510	0.56	-1.0
1,941,829	+		BBR_RS18510	0.68	-0.5
1,941,842	+		BBR_RS18510	0.69	-0.2
1,941,852	+		BBR_RS18510	0.69	-1.3
1,941,852	+		BBR_RS18510	0.69	-1.4
1,941,860	-		BBR_RS18510	0.70	+1.0
1,941,860	-		BBR_RS18510	0.70	+0.5
1,941,860	-		BBR_RS18510	0.70	-0.7
1,941,870	+		BBR_RS18510	0.71	+1.4
1,941,873	-		BBR_RS18510	0.71	+0.5
1,941,882	+		BBR_RS18510	0.72	+0.7
1,941,890	-		BBR_RS18510	0.72	+0.2
1,941,902	+		BBR_RS18510	0.73	+1.0
1,941,904	-		BBR_RS18510	0.73	+0.8
1,941,909	+		BBR_RS18510	0.74	+0.7
1,941,928	-		BBR_RS18510	0.75	-0.6
1,941,959	+		BBR_RS18510	0.77	-0.8
1,941,959	+		BBR_RS18510	0.77	+0.4
1,941,967	-		BBR_RS18510	0.78	+0.5
1,941,967	-		BBR_RS18510	0.78	+0.5
1,941,979	-		BBR_RS18510	0.79	+0.6
1,942,014	-		BBR_RS18510	0.81	-0.2
1,942,016	-		BBR_RS18510	0.81	+1.0
1,942,016	-		BBR_RS18510	0.81	+0.1
1,942,016	-		BBR_RS18510	0.81	+1.2
1,942,044	-		BBR_RS18510	0.83	+2.4
1,942,046	+		BBR_RS18510	0.84	+0.7
1,942,072	+		BBR_RS18510	0.85	-0.8
1,942,072	+		BBR_RS18510	0.85	+0.6
1,942,075	-		BBR_RS18510	0.86	+0.4
1,942,075	-		BBR_RS18510	0.86	+0.9
1,942,077	+		BBR_RS18510	0.86	+0.3
1,942,077	+		BBR_RS18510	0.86	-1.0
1,942,077	+		BBR_RS18510	0.86	-1.1
1,942,077	+		BBR_RS18510	0.86	-0.4
1,942,077	+		BBR_RS18510	0.86	+0.6
1,942,077	+		BBR_RS18510	0.86	+0.5
1,942,077	+		BBR_RS18510	0.86	-0.4
1,942,080	-		BBR_RS18510	0.86	+0.1
1,942,082	+		BBR_RS18510	0.86	+1.0
1,942,085	-		BBR_RS18510	0.86	+0.5
1,942,087	+		BBR_RS18510	0.87	+0.9
1,942,090	-		BBR_RS18510	0.87	+0.3
1,942,090	-		BBR_RS18510	0.87	-0.1
1,942,090	-		BBR_RS18510	0.87	+0.5
1,942,090	-		BBR_RS18510	0.87	-0.1
1,942,095	-		BBR_RS18510	0.87	+0.8
1,942,108	-		BBR_RS18510	0.88	+0.6
1,942,108	-		BBR_RS18510	0.88	+3.0
1,942,125	+		BBR_RS18510	0.89	+0.9
1,942,125	+		BBR_RS18510	0.89	+0.7
1,942,125	+		BBR_RS18510	0.89	-0.3
1,942,133	-		BBR_RS18510	0.90	-0.4
1,942,166	-				-0.9
1,942,224	+				-0.6
1,942,242	-				-0.4
1,942,255	+				-0.1
1,942,274	+				+0.5
1,942,282	-				-1.0
1,942,311	+				-0.6
1,942,357	+				+0.4
1,942,388	-				+0.4
1,942,388	-				+0.1
1,942,389	+				+0.4
1,942,396	+		BBR_RS18515	0.11	+0.2
1,942,399	-		BBR_RS18515	0.11	+0.3
1,942,410	+		BBR_RS18515	0.12	-1.0
1,942,435	+		BBR_RS18515	0.14	+0.9
1,942,435	+		BBR_RS18515	0.14	+0.5
1,942,435	+		BBR_RS18515	0.14	+0.4
1,942,435	+		BBR_RS18515	0.14	-0.7
1,942,435	+		BBR_RS18515	0.14	-1.1
1,942,437	-		BBR_RS18515	0.14	+0.4
1,942,437	-		BBR_RS18515	0.14	-0.7
1,942,443	-		BBR_RS18515	0.14	-1.5
1,942,444	-		BBR_RS18515	0.14	+0.5
1,942,450	-		BBR_RS18515	0.15	+0.1
1,942,450	-		BBR_RS18515	0.15	-0.3
1,942,505	+		BBR_RS18515	0.19	+0.1
1,942,515	+		BBR_RS18515	0.20	-1.5
1,942,541	+		BBR_RS18515	0.22	-1.0
1,942,564	+		BBR_RS18515	0.24	+0.2
1,942,570	+		BBR_RS18515	0.25	+0.3
1,942,570	+		BBR_RS18515	0.25	+0.1
1,942,574	+		BBR_RS18515	0.25	+0.4
1,942,578	-		BBR_RS18515	0.25	+0.3
1,942,669	+		BBR_RS18515	0.33	-0.5
1,942,669	+		BBR_RS18515	0.33	+0.2
1,942,669	+		BBR_RS18515	0.33	+0.2
1,942,669	+		BBR_RS18515	0.33	+0.2
1,942,677	-		BBR_RS18515	0.33	+0.8
1,942,677	-		BBR_RS18515	0.33	+0.5
1,942,677	-		BBR_RS18515	0.33	+0.2
1,942,677	-		BBR_RS18515	0.33	+0.4
1,942,677	-		BBR_RS18515	0.33	+0.2
1,942,677	-		BBR_RS18515	0.33	-0.4
1,942,677	-		BBR_RS18515	0.33	+0.9
1,942,677	-		BBR_RS18515	0.33	-0.6
1,942,677	-		BBR_RS18515	0.33	+0.5
1,942,679	+		BBR_RS18515	0.34	+0.2
1,942,682	-		BBR_RS18515	0.34	-0.0
1,942,684	+		BBR_RS18515	0.34	-1.2
1,942,684	+		BBR_RS18515	0.34	+1.0
1,942,684	+		BBR_RS18515	0.34	-0.2
1,942,687	-		BBR_RS18515	0.34	+0.5
1,942,687	-		BBR_RS18515	0.34	+0.2
1,942,697	-		BBR_RS18515	0.35	+0.7
1,942,698	+		BBR_RS18515	0.35	+0.0
1,942,720	+		BBR_RS18515	0.37	-1.9
1,942,746	+		BBR_RS18515	0.39	-0.4
1,942,752	-		BBR_RS18515	0.40	-0.3
1,942,754	-		BBR_RS18515	0.40	+0.0
1,942,805	+		BBR_RS18515	0.44	-0.3
1,942,807	-		BBR_RS18515	0.44	+0.7
1,942,819	-		BBR_RS18515	0.45	+0.4
1,942,820	+		BBR_RS18515	0.45	+0.1
1,942,823	-		BBR_RS18515	0.45	+1.0
1,942,845	-		BBR_RS18515	0.47	-0.3
1,942,851	-		BBR_RS18515	0.48	+0.2
1,942,851	-		BBR_RS18515	0.48	-0.9
1,942,860	-		BBR_RS18515	0.48	+0.5
1,942,876	+		BBR_RS18515	0.50	-0.1
1,942,904	+		BBR_RS18515	0.52	-0.1
1,942,904	+		BBR_RS18515	0.52	-0.3
1,942,904	+		BBR_RS18515	0.52	+0.0
1,942,904	+		BBR_RS18515	0.52	-0.3
1,942,912	-		BBR_RS18515	0.53	-0.1
1,942,937	-		BBR_RS18515	0.55	+0.5
1,942,937	-		BBR_RS18515	0.55	-0.2
1,942,946	-		BBR_RS18515	0.55	-1.1
1,942,948	-		BBR_RS18515	0.56	-0.4
1,942,997	-		BBR_RS18515	0.60	+0.1
1,942,997	-		BBR_RS18515	0.60	-1.3
1,942,998	-		BBR_RS18515	0.60	+0.9
1,943,003	-		BBR_RS18515	0.60	+0.2
1,943,040	+		BBR_RS18515	0.63	+0.7
1,943,040	+		BBR_RS18515	0.63	-0.1
1,943,051	-		BBR_RS18515	0.64	+0.2
1,943,051	-		BBR_RS18515	0.64	+0.1
1,943,052	+		BBR_RS18515	0.64	+0.3
1,943,052	+		BBR_RS18515	0.64	-0.2
1,943,060	-		BBR_RS18515	0.65	+0.8
1,943,088	-		BBR_RS18515	0.67	-0.7
1,943,092	+		BBR_RS18515	0.67	-0.1
1,943,100	-		BBR_RS18515	0.68	-0.1
1,943,100	-		BBR_RS18515	0.68	-0.5
1,943,124	+		BBR_RS18515	0.70	+0.2
1,943,137	+		BBR_RS18515	0.71	+2.6
1,943,259	+		BBR_RS18515	0.81	-0.2
1,943,259	+		BBR_RS18515	0.81	-0.1
1,943,265	+		BBR_RS18515	0.82	+0.3