Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18120

Experiment: Recovery broth with Amoxicillin 0.003 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Amoxicillin 0.003 mM
1,851,049	+		BBR_RS18110	0.85	-0.1
1,851,065	-		BBR_RS18110	0.89	+0.9
1,851,065	-		BBR_RS18110	0.89	+0.8
1,851,107	+				-1.3
1,851,117	+				-0.2
1,851,117	+				-0.6
1,851,121	-				+0.6
1,851,138	+				-1.7
1,851,145	+				-1.4
1,851,145	+				+0.3
1,851,145	+				+0.3
1,851,146	+				+0.5
1,851,146	-				+0.3
1,851,153	-				+0.4
1,851,201	+		BBR_RS18115	0.11	-0.2
1,851,201	+		BBR_RS18115	0.11	+0.2
1,851,209	-		BBR_RS18115	0.12	-0.0
1,851,209	-		BBR_RS18115	0.12	-1.6
1,851,251	-		BBR_RS18115	0.17	-1.1
1,851,251	-		BBR_RS18115	0.17	+0.6
1,851,251	-		BBR_RS18115	0.17	+0.4
1,851,251	-		BBR_RS18115	0.17	-0.6
1,851,274	+		BBR_RS18115	0.19	-0.1
1,851,290	+		BBR_RS18115	0.21	-0.8
1,851,298	+		BBR_RS18115	0.22	-0.2
1,851,302	-		BBR_RS18115	0.23	+0.1
1,851,302	-		BBR_RS18115	0.23	-1.0
1,851,365	-		BBR_RS18115	0.30	-0.8
1,851,365	-		BBR_RS18115	0.30	+0.0
1,851,371	-		BBR_RS18115	0.31	-0.0
1,851,373	+		BBR_RS18115	0.31	-0.9
1,851,381	-		BBR_RS18115	0.32	-0.5
1,851,381	-		BBR_RS18115	0.32	-0.2
1,851,381	-		BBR_RS18115	0.32	-0.3
1,851,391	-		BBR_RS18115	0.33	-0.3
1,851,391	-		BBR_RS18115	0.33	+0.1
1,851,395	+		BBR_RS18115	0.34	-0.2
1,851,398	-		BBR_RS18115	0.34	-0.0
1,851,423	-		BBR_RS18115	0.37	-2.0
1,851,428	+		BBR_RS18115	0.38	+0.0
1,851,454	+		BBR_RS18115	0.41	+0.4
1,851,478	+		BBR_RS18115	0.43	-1.9
1,851,478	+		BBR_RS18115	0.43	-0.0
1,851,478	+		BBR_RS18115	0.43	+0.6
1,851,478	+		BBR_RS18115	0.43	-0.0
1,851,479	-		BBR_RS18115	0.44	-0.2
1,851,486	-		BBR_RS18115	0.44	-0.7
1,851,486	-		BBR_RS18115	0.44	+1.0
1,851,486	-		BBR_RS18115	0.44	+0.3
1,851,507	-		BBR_RS18115	0.47	-2.7
1,851,526	-		BBR_RS18115	0.49	-0.6
1,851,542	+		BBR_RS18115	0.51	-1.9
1,851,557	+		BBR_RS18115	0.53	-0.5
1,851,557	+		BBR_RS18115	0.53	-0.3
1,851,612	+		BBR_RS18115	0.59	+0.6
1,851,612	+		BBR_RS18115	0.59	+0.8
1,851,639	+		BBR_RS18115	0.62	+1.2
1,851,639	+		BBR_RS18115	0.62	+1.1
1,851,646	+		BBR_RS18115	0.63	-0.7
1,851,670	+		BBR_RS18115	0.66	+0.5
1,851,672	+		BBR_RS18115	0.66	-0.5
1,851,672	+		BBR_RS18115	0.66	-1.7
1,851,672	+		BBR_RS18115	0.66	-0.3
1,851,677	+		BBR_RS18115	0.67	-0.1
1,851,680	-		BBR_RS18115	0.67	-0.3
1,851,680	-		BBR_RS18115	0.67	+0.2
1,851,680	-		BBR_RS18115	0.67	-1.0
1,851,680	-		BBR_RS18115	0.67	+0.3
1,851,680	-		BBR_RS18115	0.67	-0.3
1,851,682	+		BBR_RS18115	0.67	-0.5
1,851,685	-		BBR_RS18115	0.68	+1.1
1,851,720	+		BBR_RS18115	0.72	+0.0
1,851,744	-		BBR_RS18115	0.75	+0.6
1,851,778	-		BBR_RS18115	0.79	-0.2
1,851,817	-		BBR_RS18115	0.83	+0.2
1,851,835	-		BBR_RS18115	0.86	+0.1
1,851,839	-		BBR_RS18115	0.86	+0.4
1,851,852	+		BBR_RS18115	0.88	+0.3
1,851,852	+		BBR_RS18115	0.88	-0.5
1,851,858	-		BBR_RS18115	0.88	+1.1
1,851,858	-		BBR_RS18115	0.88	+0.6
1,851,862	+		BBR_RS18115	0.89	-0.2
1,851,869	+		BBR_RS18115	0.90	-1.1
1,851,869	+		BBR_RS18115	0.90	-3.2
1,851,876	+				-0.2
1,851,876	+				+0.2
1,851,877	-				-0.4
1,851,877	-				+0.1
1,851,877	-				-0.6
1,851,884	-				+0.0
1,851,906	+				+0.3
1,851,906	+				+0.3
1,851,906	+				+0.4
1,851,906	+				-1.2
1,851,906	+				-0.4
1,851,914	-				+0.4
1,851,914	-				-1.2
1,851,964	+				-0.0
1,852,030	+				+0.3
1,852,050	-		BBR_RS18120	0.10	-0.2
1,852,075	+		BBR_RS18120	0.23	+0.9
1,852,078	+		BBR_RS18120	0.25	+3.4
1,852,133	-		BBR_RS18120	0.53	+0.9
1,852,133	-		BBR_RS18120	0.53	-1.2
1,852,219	+				+0.1
1,852,219	+				-0.2
1,852,219	+				+0.3
1,852,219	+				+0.1
1,852,219	+				-0.1
1,852,219	+				+0.3
1,852,224	+				+0.2
1,852,227	-				-2.7
1,852,227	-				+0.3
1,852,227	-				+0.4
1,852,227	-				-0.4
1,852,227	-				-0.3
1,852,227	-				-1.7
1,852,227	-				-0.6
1,852,227	-				+0.1
1,852,227	-				-0.2
1,852,227	-				+0.2
1,852,229	+				+0.1
1,852,229	-				-1.3
1,852,237	-				-1.0
1,852,243	+				-0.2
1,852,243	+				-0.7
1,852,255	+				+0.1
1,852,287	+				+0.1
1,852,295	-				+1.0
1,852,310	+				+0.6
1,852,318	-				-0.5
1,852,320	+				-0.5
1,852,433	+				-0.1
1,852,435	-				+0.0
1,852,446	-		BBR_RS18125	0.10	-0.0
1,852,451	-		BBR_RS18125	0.11	-0.5
1,852,461	+		BBR_RS18125	0.13	-0.6
1,852,461	+		BBR_RS18125	0.13	+1.3
1,852,461	+		BBR_RS18125	0.13	+0.3
1,852,461	+		BBR_RS18125	0.13	-0.2
1,852,469	-		BBR_RS18125	0.15	-0.4
1,852,469	-		BBR_RS18125	0.15	-0.1
1,852,469	-		BBR_RS18125	0.15	-0.1
1,852,469	-		BBR_RS18125	0.15	-1.7
1,852,469	-		BBR_RS18125	0.15	-0.4
1,852,469	-		BBR_RS18125	0.15	+0.8
1,852,469	-		BBR_RS18125	0.15	+0.7
1,852,475	+		BBR_RS18125	0.16	-0.3
1,852,483	-		BBR_RS18125	0.17	-0.8
1,852,483	-		BBR_RS18125	0.17	-0.4
1,852,485	-		BBR_RS18125	0.17	-0.3
1,852,522	-		BBR_RS18125	0.24	+1.2
1,852,530	+		BBR_RS18125	0.26	+0.3
1,852,559	-		BBR_RS18125	0.31	-0.5
1,852,578	-		BBR_RS18125	0.35	-0.1
1,852,644	+		BBR_RS18125	0.47	-0.7
1,852,663	+		BBR_RS18125	0.50	-0.8
1,852,672	-		BBR_RS18125	0.52	+0.4
1,852,698	-		BBR_RS18125	0.57	+0.5
1,852,729	-		BBR_RS18125	0.62	-0.2
1,852,735	+		BBR_RS18125	0.64	+0.1
1,852,738	+		BBR_RS18125	0.64	-0.3
1,852,740	+		BBR_RS18125	0.64	+0.3
1,852,795	+		BBR_RS18125	0.75	+0.7
1,852,804	-		BBR_RS18125	0.76	+0.7
1,852,804	-		BBR_RS18125	0.76	-0.7
1,852,818	+		BBR_RS18125	0.79	-1.0
1,852,818	+		BBR_RS18125	0.79	+0.6
1,852,818	+		BBR_RS18125	0.79	+0.2
1,852,818	+		BBR_RS18125	0.79	+0.6
1,852,818	+		BBR_RS18125	0.79	+0.2
1,852,818	+		BBR_RS18125	0.79	-0.0
1,852,826	-		BBR_RS18125	0.80	-0.1
1,852,826	-		BBR_RS18125	0.80	-2.0
1,852,826	-		BBR_RS18125	0.80	-2.9
1,852,826	-		BBR_RS18125	0.80	+0.7
1,852,828	+		BBR_RS18125	0.81	-0.0
1,852,856	+		BBR_RS18125	0.86	+0.0
1,852,856	+		BBR_RS18125	0.86	+0.1
1,852,864	-		BBR_RS18125	0.87	+0.3
1,852,888	-				-0.2
1,852,888	-				+0.1
1,852,909	+				-0.3
1,852,973	+				+0.8
1,852,981	-				+0.6
1,853,009	-				+0.3
1,853,032	+				-0.4
1,853,074	+				-0.5
1,853,074	+				+0.8
1,853,074	+				+0.0
1,853,077	-				-0.5
1,853,077	-				-0.5
1,853,077	-				-2.3
1,853,077	-				-0.2
1,853,128	-				+0.4
1,853,142	-				-0.2
1,853,145	+				-0.5
1,853,145	+				+0.3
1,853,145	+				-0.6
1,853,152	+				-0.1
1,853,153	-				+0.2
1,853,153	-				-1.0
1,853,153	-				+1.2
1,853,153	-				-0.2
1,853,153	-				-0.4