Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17250

Experiment: Recovery broth with Amoxicillin 0.003 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Amoxicillin 0.003 mM
1,647,923	-		BBR_RS17245	0.41	-0.1
1,647,969	+		BBR_RS17245	0.44	+0.3
1,647,989	+		BBR_RS17245	0.46	+0.6
1,648,009	+		BBR_RS17245	0.47	+0.6
1,648,012	+		BBR_RS17245	0.47	-0.4
1,648,017	-		BBR_RS17245	0.47	+0.4
1,648,025	-		BBR_RS17245	0.48	-0.4
1,648,025	-		BBR_RS17245	0.48	+0.3
1,648,028	+		BBR_RS17245	0.48	+0.2
1,648,057	+		BBR_RS17245	0.50	-0.3
1,648,065	-		BBR_RS17245	0.51	+0.3
1,648,074	+		BBR_RS17245	0.51	-0.5
1,648,145	-		BBR_RS17245	0.56	-1.4
1,648,165	+		BBR_RS17245	0.58	-0.2
1,648,175	+		BBR_RS17245	0.59	-0.1
1,648,181	-		BBR_RS17245	0.59	-0.5
1,648,183	-		BBR_RS17245	0.59	-0.1
1,648,183	-		BBR_RS17245	0.59	+0.8
1,648,192	+		BBR_RS17245	0.60	+0.0
1,648,192	+		BBR_RS17245	0.60	+0.7
1,648,214	+		BBR_RS17245	0.61	-0.6
1,648,249	-		BBR_RS17245	0.64	+0.1
1,648,249	-		BBR_RS17245	0.64	-0.3
1,648,265	+		BBR_RS17245	0.65	+0.5
1,648,326	-		BBR_RS17245	0.69	-1.4
1,648,338	+		BBR_RS17245	0.70	-0.1
1,648,345	-		BBR_RS17245	0.70	-0.0
1,648,352	+		BBR_RS17245	0.71	+0.1
1,648,352	-		BBR_RS17245	0.71	-0.1
1,648,360	-		BBR_RS17245	0.71	-1.1
1,648,375	-		BBR_RS17245	0.72	+0.9
1,648,421	+		BBR_RS17245	0.76	+0.1
1,648,424	-		BBR_RS17245	0.76	+1.1
1,648,473	-		BBR_RS17245	0.79	-0.2
1,648,484	+		BBR_RS17245	0.80	+0.3
1,648,489	+		BBR_RS17245	0.80	-0.2
1,648,489	+		BBR_RS17245	0.80	+0.2
1,648,515	-		BBR_RS17245	0.82	-0.4
1,648,517	+		BBR_RS17245	0.82	+0.2
1,648,525	-		BBR_RS17245	0.83	+0.4
1,648,571	-		BBR_RS17245	0.86	+0.4
1,648,573	+		BBR_RS17245	0.86	+0.6
1,648,590	-		BBR_RS17245	0.87	+0.1
1,648,590	-		BBR_RS17245	0.87	+0.8
1,648,605	+		BBR_RS17245	0.88	-0.8
1,648,605	+		BBR_RS17245	0.88	+0.1
1,648,605	+		BBR_RS17245	0.88	-0.4
1,648,612	-		BBR_RS17245	0.89	-0.2
1,648,612	-		BBR_RS17245	0.89	+1.0
1,648,613	-		BBR_RS17245	0.89	-0.8
1,648,613	-		BBR_RS17245	0.89	+0.5
1,648,632	+				-0.8
1,648,632	+				+1.4
1,648,634	+				+1.8
1,648,634	+				+0.9
1,648,640	-				-0.7
1,648,642	-				-0.7
1,648,650	+				+1.2
1,648,650	+				+1.3
1,648,655	-				+0.6
1,648,683	+				+0.8
1,648,719	-				-1.0
1,648,729	+				-0.1
1,648,744	-				+0.4
1,648,772	-				-0.2
1,648,789	+				-1.9
1,648,789	+				-0.2
1,648,809	+				+0.8
1,648,841	+				+0.3
1,648,841	+				+0.3
1,648,841	+				+0.4
1,648,867	-				+0.6
1,648,867	-				-0.3
1,648,878	-				+0.0
1,648,881	-				-0.1
1,648,881	-				+0.0
1,648,903	-				+0.2
1,648,932	-		BBR_RS17250	0.11	+0.4
1,648,971	-		BBR_RS17250	0.15	+0.3
1,648,987	+		BBR_RS17250	0.17	+0.6
1,648,987	+		BBR_RS17250	0.17	+1.0
1,648,990	-		BBR_RS17250	0.17	-0.4
1,648,995	-		BBR_RS17250	0.17	+0.1
1,649,015	+		BBR_RS17250	0.19	-0.0
1,649,025	+		BBR_RS17250	0.20	+0.2
1,649,027	+		BBR_RS17250	0.21	+1.1
1,649,035	-		BBR_RS17250	0.21	+1.2
1,649,072	+		BBR_RS17250	0.25	+0.8
1,649,087	+		BBR_RS17250	0.26	-1.1
1,649,095	-		BBR_RS17250	0.27	+0.3
1,649,100	-		BBR_RS17250	0.28	+0.2
1,649,109	-		BBR_RS17250	0.28	-0.1
1,649,116	+		BBR_RS17250	0.29	+0.2
1,649,198	+		BBR_RS17250	0.37	-0.2
1,649,218	-		BBR_RS17250	0.39	-1.1
1,649,223	+		BBR_RS17250	0.39	+0.2
1,649,223	+		BBR_RS17250	0.39	+0.0
1,649,238	+		BBR_RS17250	0.41	-1.3
1,649,241	-		BBR_RS17250	0.41	+0.8
1,649,336	-		BBR_RS17250	0.50	+0.5
1,649,353	+		BBR_RS17250	0.52	+1.3
1,649,354	+		BBR_RS17250	0.52	-0.2
1,649,361	+		BBR_RS17250	0.53	+0.3
1,649,366	+		BBR_RS17250	0.53	-0.1
1,649,366	+		BBR_RS17250	0.53	+0.0
1,649,366	+		BBR_RS17250	0.53	+1.4
1,649,396	-		BBR_RS17250	0.56	+0.3
1,649,412	-		BBR_RS17250	0.58	-1.2
1,649,450	+		BBR_RS17250	0.61	+0.3
1,649,454	+		BBR_RS17250	0.62	-0.9
1,649,466	+		BBR_RS17250	0.63	-0.4
1,649,477	+		BBR_RS17250	0.64	+1.1
1,649,482	+		BBR_RS17250	0.64	+0.3
1,649,555	+		BBR_RS17250	0.71	+0.0
1,649,563	+		BBR_RS17250	0.72	+0.9
1,649,604	+		BBR_RS17250	0.76	-0.1
1,649,604	+		BBR_RS17250	0.76	+0.0
1,649,604	+		BBR_RS17250	0.76	+1.1
1,649,604	+		BBR_RS17250	0.76	-1.2
1,649,672	+		BBR_RS17250	0.83	+1.0
1,649,672	+		BBR_RS17250	0.83	-0.2
1,649,677	-		BBR_RS17250	0.83	+0.1
1,649,680	-		BBR_RS17250	0.83	-0.4
1,649,700	+		BBR_RS17250	0.85	-3.0
1,649,707	+		BBR_RS17250	0.86	+0.8
1,649,708	-		BBR_RS17250	0.86	-0.0
1,649,763	+				+0.6
1,649,825	-				+1.0
1,649,853	+				-0.0
1,649,935	+				-0.2
1,650,000	-				+0.4
1,650,032	+				-0.2
1,650,048	-				+0.2
1,650,098	+		BBR_RS17255	0.18	+0.0
1,650,098	+		BBR_RS17255	0.18	+0.3
1,650,123	+		BBR_RS17255	0.22	-1.4
1,650,124	+		BBR_RS17255	0.23	-0.2
1,650,132	-		BBR_RS17255	0.24	+1.2
1,650,181	-		BBR_RS17255	0.34	+0.2
1,650,217	-		BBR_RS17255	0.40	-0.3
1,650,217	-		BBR_RS17255	0.40	-0.1
1,650,237	+		BBR_RS17255	0.44	+0.1
1,650,237	+		BBR_RS17255	0.44	+0.0
1,650,262	+		BBR_RS17255	0.49	+0.6
1,650,264	+		BBR_RS17255	0.50	+0.4
1,650,285	-		BBR_RS17255	0.54	+0.2
1,650,373	+		BBR_RS17255	0.71	+0.0
1,650,379	-		BBR_RS17255	0.72	-0.7
1,650,381	+		BBR_RS17255	0.72	+0.0
1,650,381	-		BBR_RS17255	0.72	-0.1
1,650,389	-		BBR_RS17255	0.74	+0.1
1,650,429	+		BBR_RS17255	0.81	-1.0
1,650,439	+		BBR_RS17255	0.83	-0.6
1,650,444	-		BBR_RS17255	0.84	+0.4
1,650,446	+		BBR_RS17255	0.85	+0.1
1,650,447	-		BBR_RS17255	0.85	+1.1
1,650,457	-		BBR_RS17255	0.87	+0.9
1,650,464	+		BBR_RS17255	0.88	+0.4
1,650,474	+				+0.6
1,650,517	+				-0.8
1,650,517	+				+0.5
1,650,525	-				-0.1
1,650,526	+				-1.1
1,650,595	+				+1.4
1,650,595	-				-0.9
1,650,629	-		BBR_RS17260	0.12	-0.3
1,650,648	-		BBR_RS17260	0.16	-1.1
1,650,661	+		BBR_RS17260	0.19	+0.9
1,650,669	-		BBR_RS17260	0.21	+0.4
1,650,671	+		BBR_RS17260	0.21	-0.1
1,650,755	-		BBR_RS17260	0.39	-0.7
1,650,757	-		BBR_RS17260	0.39	-1.5
1,650,833	-		BBR_RS17260	0.55	+2.2
1,650,839	+		BBR_RS17260	0.57	+0.0
1,650,852	-		BBR_RS17260	0.59	-0.3
1,650,852	-		BBR_RS17260	0.59	-0.7