Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13535

Experiment: Recovery broth with Amoxicillin 0.003 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS13525 and BBR_RS13530 overlap by 1 nucleotidesBBR_RS13530 and BBR_RS13535 are separated by 207 nucleotidesBBR_RS13535 and BBR_RS13540 are separated by 40 nucleotides BBR_RS13525: BBR_RS13525 - CrcB family protein, at 807,116 to 807,481 _RS13525 BBR_RS13530: BBR_RS13530 - CrcB family protein, at 807,481 to 808,017 _RS13530 BBR_RS13535: BBR_RS13535 - MerR family DNA-binding transcriptional regulator, at 808,225 to 808,689 _RS13535 BBR_RS13540: BBR_RS13540 - alcohol dehydrogenase, at 808,730 to 809,773 _RS13540 Position (kb) 808 809Strain fitness (log2 ratio) -2 -1 0 1 2 3at 807.234 kb on + strand, within BBR_RS13525at 807.253 kb on - strand, within BBR_RS13525at 807.269 kb on + strand, within BBR_RS13525at 807.409 kb on + strand, within BBR_RS13525at 807.502 kb on - strandat 807.596 kb on + strand, within BBR_RS13530at 807.603 kb on - strand, within BBR_RS13530at 807.604 kb on - strand, within BBR_RS13530at 807.638 kb on + strand, within BBR_RS13530at 807.663 kb on + strand, within BBR_RS13530at 807.691 kb on - strand, within BBR_RS13530at 807.718 kb on - strand, within BBR_RS13530at 807.734 kb on - strand, within BBR_RS13530at 807.787 kb on + strand, within BBR_RS13530at 807.792 kb on + strand, within BBR_RS13530at 807.797 kb on + strand, within BBR_RS13530at 807.800 kb on - strand, within BBR_RS13530at 807.800 kb on - strand, within BBR_RS13530at 807.800 kb on - strand, within BBR_RS13530at 807.800 kb on - strand, within BBR_RS13530at 807.800 kb on - strand, within BBR_RS13530at 807.800 kb on - strand, within BBR_RS13530at 807.933 kb on + strand, within BBR_RS13530at 807.955 kb on - strand, within BBR_RS13530at 807.957 kb on + strand, within BBR_RS13530at 807.998 kb on + strandat 808.000 kb on - strandat 808.277 kb on + strand, within BBR_RS13535at 808.301 kb on + strand, within BBR_RS13535at 808.304 kb on - strand, within BBR_RS13535at 808.309 kb on - strand, within BBR_RS13535at 808.309 kb on - strand, within BBR_RS13535at 808.309 kb on - strand, within BBR_RS13535at 808.354 kb on - strand, within BBR_RS13535at 808.386 kb on + strand, within BBR_RS13535at 808.392 kb on - strand, within BBR_RS13535at 808.394 kb on - strand, within BBR_RS13535at 808.394 kb on - strand, within BBR_RS13535at 808.439 kb on + strand, within BBR_RS13535at 808.447 kb on - strand, within BBR_RS13535at 808.465 kb on + strand, within BBR_RS13535at 808.495 kb on - strand, within BBR_RS13535at 808.495 kb on - strand, within BBR_RS13535at 808.509 kb on + strand, within BBR_RS13535at 808.525 kb on + strand, within BBR_RS13535at 808.554 kb on + strand, within BBR_RS13535at 808.574 kb on - strand, within BBR_RS13535at 808.574 kb on - strand, within BBR_RS13535at 808.595 kb on - strand, within BBR_RS13535at 808.656 kb on + strandat 808.664 kb on - strandat 808.664 kb on - strandat 808.664 kb on - strandat 808.803 kb on + strandat 808.811 kb on - strandat 808.821 kb on - strandat 808.822 kb on - strandat 808.823 kb on + strandat 808.831 kb on - strandat 808.838 kb on + strand, within BBR_RS13540at 808.838 kb on + strand, within BBR_RS13540at 808.846 kb on - strand, within BBR_RS13540at 808.875 kb on + strand, within BBR_RS13540at 808.883 kb on - strand, within BBR_RS13540at 808.895 kb on + strand, within BBR_RS13540at 808.895 kb on + strand, within BBR_RS13540at 808.921 kb on + strand, within BBR_RS13540at 808.924 kb on + strand, within BBR_RS13540at 808.937 kb on - strand, within BBR_RS13540at 809.088 kb on + strand, within BBR_RS13540at 809.108 kb on + strand, within BBR_RS13540at 809.120 kb on - strand, within BBR_RS13540at 809.156 kb on - strand, within BBR_RS13540at 809.184 kb on - strand, within BBR_RS13540at 809.210 kb on - strand, within BBR_RS13540at 809.227 kb on + strand, within BBR_RS13540at 809.278 kb on + strand, within BBR_RS13540at 809.291 kb on - strand, within BBR_RS13540at 809.324 kb on + strand, within BBR_RS13540at 809.324 kb on + strand, within BBR_RS13540at 809.339 kb on - strand, within BBR_RS13540at 809.359 kb on - strand, within BBR_RS13540at 809.417 kb on + strand, within BBR_RS13540at 809.417 kb on + strand, within BBR_RS13540at 809.453 kb on + strand, within BBR_RS13540at 809.453 kb on + strand, within BBR_RS13540at 809.453 kb on + strand, within BBR_RS13540at 809.453 kb on + strand, within BBR_RS13540at 809.469 kb on + strand, within BBR_RS13540at 809.537 kb on - strand, within BBR_RS13540at 809.549 kb on + strand, within BBR_RS13540at 809.555 kb on - strand, within BBR_RS13540at 809.625 kb on + strand, within BBR_RS13540at 809.636 kb on + strand, within BBR_RS13540at 809.661 kb on - strand, within BBR_RS13540at 809.661 kb on - strand, within BBR_RS13540at 809.661 kb on - strand, within BBR_RS13540at 809.665 kb on + strand, within BBR_RS13540at 809.673 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Amoxicillin 0.003 mM
remove
807,234 + BBR_RS13525 0.32 -0.4
807,253 - BBR_RS13525 0.37 +0.2
807,269 + BBR_RS13525 0.42 -0.3
807,409 + BBR_RS13525 0.80 +0.5
807,502 - +0.1
807,596 + BBR_RS13530 0.21 +0.6
807,603 - BBR_RS13530 0.23 +0.0
807,604 - BBR_RS13530 0.23 -0.7
807,638 + BBR_RS13530 0.29 -0.6
807,663 + BBR_RS13530 0.34 +0.3
807,691 - BBR_RS13530 0.39 +0.7
807,718 - BBR_RS13530 0.44 -0.3
807,734 - BBR_RS13530 0.47 -0.4
807,787 + BBR_RS13530 0.57 +1.0
807,792 + BBR_RS13530 0.58 +0.6
807,797 + BBR_RS13530 0.59 -0.1
807,800 - BBR_RS13530 0.59 +0.1
807,800 - BBR_RS13530 0.59 +1.4
807,800 - BBR_RS13530 0.59 -1.7
807,800 - BBR_RS13530 0.59 -1.9
807,800 - BBR_RS13530 0.59 -0.2
807,800 - BBR_RS13530 0.59 -1.9
807,933 + BBR_RS13530 0.84 +0.8
807,955 - BBR_RS13530 0.88 -1.4
807,957 + BBR_RS13530 0.89 +1.5
807,998 + +0.1
808,000 - +0.1
808,277 + BBR_RS13535 0.11 +0.6
808,301 + BBR_RS13535 0.16 +0.8
808,304 - BBR_RS13535 0.17 +1.0
808,309 - BBR_RS13535 0.18 -1.0
808,309 - BBR_RS13535 0.18 -0.9
808,309 - BBR_RS13535 0.18 +0.0
808,354 - BBR_RS13535 0.28 -0.1
808,386 + BBR_RS13535 0.35 +1.0
808,392 - BBR_RS13535 0.36 +0.6
808,394 - BBR_RS13535 0.36 +0.2
808,394 - BBR_RS13535 0.36 -0.1
808,439 + BBR_RS13535 0.46 -1.1
808,447 - BBR_RS13535 0.48 +0.5
808,465 + BBR_RS13535 0.52 +1.0
808,495 - BBR_RS13535 0.58 -0.6
808,495 - BBR_RS13535 0.58 +0.1
808,509 + BBR_RS13535 0.61 -0.4
808,525 + BBR_RS13535 0.65 +1.2
808,554 + BBR_RS13535 0.71 -0.3
808,574 - BBR_RS13535 0.75 -0.0
808,574 - BBR_RS13535 0.75 +3.3
808,595 - BBR_RS13535 0.80 +0.5
808,656 + +0.4
808,664 - +1.4
808,664 - -1.2
808,664 - +0.8
808,803 + +0.8
808,811 - +1.5
808,821 - +0.0
808,822 - -0.5
808,823 + +1.1
808,831 - -0.5
808,838 + BBR_RS13540 0.10 +0.3
808,838 + BBR_RS13540 0.10 -1.4
808,846 - BBR_RS13540 0.11 +0.4
808,875 + BBR_RS13540 0.14 +0.2
808,883 - BBR_RS13540 0.15 -0.5
808,895 + BBR_RS13540 0.16 -0.1
808,895 + BBR_RS13540 0.16 +1.4
808,921 + BBR_RS13540 0.18 +0.2
808,924 + BBR_RS13540 0.19 +2.4
808,937 - BBR_RS13540 0.20 +0.2
809,088 + BBR_RS13540 0.34 -0.5
809,108 + BBR_RS13540 0.36 -0.5
809,120 - BBR_RS13540 0.37 +0.8
809,156 - BBR_RS13540 0.41 -0.4
809,184 - BBR_RS13540 0.43 +1.5
809,210 - BBR_RS13540 0.46 -1.0
809,227 + BBR_RS13540 0.48 +0.3
809,278 + BBR_RS13540 0.52 +0.0
809,291 - BBR_RS13540 0.54 -1.3
809,324 + BBR_RS13540 0.57 +0.3
809,324 + BBR_RS13540 0.57 +0.3
809,339 - BBR_RS13540 0.58 +0.2
809,359 - BBR_RS13540 0.60 -0.4
809,417 + BBR_RS13540 0.66 +0.6
809,417 + BBR_RS13540 0.66 +0.7
809,453 + BBR_RS13540 0.69 +1.0
809,453 + BBR_RS13540 0.69 -0.7
809,453 + BBR_RS13540 0.69 +0.5
809,453 + BBR_RS13540 0.69 -0.5
809,469 + BBR_RS13540 0.71 -0.8
809,537 - BBR_RS13540 0.77 -0.3
809,549 + BBR_RS13540 0.78 +0.3
809,555 - BBR_RS13540 0.79 +0.7
809,625 + BBR_RS13540 0.86 -0.0
809,636 + BBR_RS13540 0.87 +1.0
809,661 - BBR_RS13540 0.89 +1.1
809,661 - BBR_RS13540 0.89 +0.9
809,661 - BBR_RS13540 0.89 +0.6
809,665 + BBR_RS13540 0.90 +0.4
809,673 - -1.1

Or see this region's nucleotide sequence