Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12855

Experiment: Recovery broth with Amoxicillin 0.003 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12850 and BBR_RS12855 are separated by 15 nucleotidesBBR_RS12855 and BBR_RS12860 are separated by 46 nucleotides BBR_RS12850: BBR_RS12850 - NAD(+) diphosphatase, at 632,039 to 633,295 _RS12850 BBR_RS12855: BBR_RS12855 - glycine cleavage system protein H, at 633,311 to 633,712 _RS12855 BBR_RS12860: BBR_RS12860 - DUF2183 domain-containing protein, at 633,759 to 635,015 _RS12860 Position (kb) 633 634Strain fitness (log2 ratio) -2 -1 0 1 2at 632.313 kb on + strand, within BBR_RS12850at 632.314 kb on + strand, within BBR_RS12850at 632.314 kb on + strand, within BBR_RS12850at 632.316 kb on - strand, within BBR_RS12850at 632.321 kb on - strand, within BBR_RS12850at 632.321 kb on - strand, within BBR_RS12850at 632.321 kb on - strand, within BBR_RS12850at 632.321 kb on - strand, within BBR_RS12850at 632.322 kb on - strand, within BBR_RS12850at 632.342 kb on - strand, within BBR_RS12850at 632.349 kb on + strand, within BBR_RS12850at 632.419 kb on + strand, within BBR_RS12850at 632.422 kb on - strand, within BBR_RS12850at 632.431 kb on + strand, within BBR_RS12850at 632.431 kb on + strand, within BBR_RS12850at 632.431 kb on + strand, within BBR_RS12850at 632.431 kb on + strand, within BBR_RS12850at 632.431 kb on + strand, within BBR_RS12850at 632.431 kb on + strand, within BBR_RS12850at 632.431 kb on + strand, within BBR_RS12850at 632.431 kb on + strand, within BBR_RS12850at 632.432 kb on - strand, within BBR_RS12850at 632.432 kb on - strand, within BBR_RS12850at 632.439 kb on - strand, within BBR_RS12850at 632.439 kb on - strand, within BBR_RS12850at 632.448 kb on - strand, within BBR_RS12850at 632.456 kb on - strand, within BBR_RS12850at 632.456 kb on - strand, within BBR_RS12850at 632.482 kb on - strand, within BBR_RS12850at 632.488 kb on + strand, within BBR_RS12850at 632.491 kb on - strand, within BBR_RS12850at 632.508 kb on - strand, within BBR_RS12850at 632.508 kb on - strand, within BBR_RS12850at 632.510 kb on + strand, within BBR_RS12850at 632.518 kb on - strand, within BBR_RS12850at 632.518 kb on - strand, within BBR_RS12850at 632.530 kb on + strand, within BBR_RS12850at 632.559 kb on + strand, within BBR_RS12850at 632.572 kb on + strand, within BBR_RS12850at 632.572 kb on + strand, within BBR_RS12850at 632.580 kb on - strand, within BBR_RS12850at 632.588 kb on + strand, within BBR_RS12850at 632.622 kb on - strand, within BBR_RS12850at 632.622 kb on - strand, within BBR_RS12850at 632.647 kb on + strand, within BBR_RS12850at 632.667 kb on + strand, within BBR_RS12850at 632.700 kb on + strand, within BBR_RS12850at 632.721 kb on - strand, within BBR_RS12850at 632.721 kb on - strand, within BBR_RS12850at 632.727 kb on + strand, within BBR_RS12850at 632.727 kb on + strand, within BBR_RS12850at 632.732 kb on + strand, within BBR_RS12850at 632.766 kb on + strand, within BBR_RS12850at 632.766 kb on + strand, within BBR_RS12850at 632.774 kb on - strand, within BBR_RS12850at 632.790 kb on - strand, within BBR_RS12850at 632.807 kb on + strand, within BBR_RS12850at 632.809 kb on - strand, within BBR_RS12850at 632.836 kb on + strand, within BBR_RS12850at 632.844 kb on - strand, within BBR_RS12850at 632.849 kb on - strand, within BBR_RS12850at 632.849 kb on - strand, within BBR_RS12850at 632.884 kb on - strand, within BBR_RS12850at 632.889 kb on - strand, within BBR_RS12850at 632.933 kb on + strand, within BBR_RS12850at 632.933 kb on + strand, within BBR_RS12850at 632.938 kb on + strand, within BBR_RS12850at 632.938 kb on + strand, within BBR_RS12850at 632.941 kb on - strand, within BBR_RS12850at 632.941 kb on - strand, within BBR_RS12850at 632.979 kb on + strand, within BBR_RS12850at 633.008 kb on - strand, within BBR_RS12850at 633.048 kb on + strand, within BBR_RS12850at 633.048 kb on + strand, within BBR_RS12850at 633.048 kb on + strand, within BBR_RS12850at 633.065 kb on + strand, within BBR_RS12850at 633.070 kb on + strand, within BBR_RS12850at 633.071 kb on - strand, within BBR_RS12850at 633.078 kb on - strand, within BBR_RS12850at 633.078 kb on - strand, within BBR_RS12850at 633.116 kb on + strand, within BBR_RS12850at 633.126 kb on - strand, within BBR_RS12850at 633.126 kb on - strand, within BBR_RS12850at 633.149 kb on + strand, within BBR_RS12850at 633.149 kb on + strand, within BBR_RS12850at 633.197 kb on + strandat 633.239 kb on + strandat 633.259 kb on + strandat 633.259 kb on + strandat 633.259 kb on + strandat 633.259 kb on + strandat 633.264 kb on + strandat 633.267 kb on - strandat 633.267 kb on - strandat 633.267 kb on - strandat 633.267 kb on - strandat 633.267 kb on - strandat 633.267 kb on - strandat 633.267 kb on - strandat 633.267 kb on - strandat 633.272 kb on - strandat 633.284 kb on - strandat 633.288 kb on + strandat 633.288 kb on + strandat 633.288 kb on + strandat 633.290 kb on + strandat 633.295 kb on + strandat 633.298 kb on - strandat 633.298 kb on - strandat 633.299 kb on + strandat 633.307 kb on + strandat 633.307 kb on + strandat 633.315 kb on - strandat 633.315 kb on - strandat 633.329 kb on - strandat 633.329 kb on - strandat 633.356 kb on - strand, within BBR_RS12855at 633.357 kb on + strand, within BBR_RS12855at 633.359 kb on + strand, within BBR_RS12855at 633.361 kb on + strand, within BBR_RS12855at 633.379 kb on + strand, within BBR_RS12855at 633.379 kb on + strand, within BBR_RS12855at 633.379 kb on + strand, within BBR_RS12855at 633.379 kb on + strand, within BBR_RS12855at 633.379 kb on + strand, within BBR_RS12855at 633.564 kb on - strand, within BBR_RS12855at 633.648 kb on - strand, within BBR_RS12855at 633.697 kb on - strandat 633.707 kb on - strandat 633.727 kb on - strandat 633.733 kb on + strandat 633.736 kb on - strandat 633.742 kb on + strandat 633.747 kb on + strandat 633.751 kb on - strandat 633.805 kb on + strandat 633.818 kb on - strandat 633.875 kb on + strandat 633.901 kb on + strand, within BBR_RS12860at 633.904 kb on - strand, within BBR_RS12860at 633.910 kb on + strand, within BBR_RS12860at 633.911 kb on + strand, within BBR_RS12860at 633.918 kb on - strand, within BBR_RS12860at 633.919 kb on - strand, within BBR_RS12860at 633.927 kb on + strand, within BBR_RS12860at 633.946 kb on + strand, within BBR_RS12860at 633.951 kb on + strand, within BBR_RS12860at 633.954 kb on - strand, within BBR_RS12860at 633.964 kb on - strand, within BBR_RS12860at 634.024 kb on - strand, within BBR_RS12860at 634.031 kb on + strand, within BBR_RS12860at 634.035 kb on + strand, within BBR_RS12860at 634.039 kb on - strand, within BBR_RS12860at 634.049 kb on - strand, within BBR_RS12860at 634.049 kb on - strand, within BBR_RS12860at 634.118 kb on + strand, within BBR_RS12860at 634.162 kb on + strand, within BBR_RS12860at 634.170 kb on - strand, within BBR_RS12860at 634.185 kb on - strand, within BBR_RS12860at 634.191 kb on + strand, within BBR_RS12860at 634.191 kb on + strand, within BBR_RS12860at 634.244 kb on - strand, within BBR_RS12860at 634.246 kb on + strand, within BBR_RS12860at 634.246 kb on + strand, within BBR_RS12860at 634.254 kb on - strand, within BBR_RS12860at 634.272 kb on + strand, within BBR_RS12860at 634.272 kb on - strand, within BBR_RS12860at 634.291 kb on + strand, within BBR_RS12860at 634.299 kb on - strand, within BBR_RS12860at 634.299 kb on - strand, within BBR_RS12860at 634.315 kb on + strand, within BBR_RS12860at 634.338 kb on + strand, within BBR_RS12860at 634.379 kb on + strand, within BBR_RS12860at 634.379 kb on + strand, within BBR_RS12860at 634.379 kb on + strand, within BBR_RS12860at 634.379 kb on + strand, within BBR_RS12860at 634.387 kb on - strand, within BBR_RS12860at 634.387 kb on - strand, within BBR_RS12860at 634.387 kb on - strand, within BBR_RS12860at 634.390 kb on - strand, within BBR_RS12860at 634.397 kb on - strand, within BBR_RS12860at 634.397 kb on - strand, within BBR_RS12860at 634.399 kb on + strand, within BBR_RS12860at 634.407 kb on - strand, within BBR_RS12860at 634.407 kb on - strand, within BBR_RS12860at 634.407 kb on - strand, within BBR_RS12860at 634.415 kb on + strand, within BBR_RS12860at 634.425 kb on - strand, within BBR_RS12860at 634.435 kb on - strand, within BBR_RS12860at 634.471 kb on - strand, within BBR_RS12860at 634.528 kb on - strand, within BBR_RS12860at 634.528 kb on - strand, within BBR_RS12860at 634.533 kb on + strand, within BBR_RS12860at 634.546 kb on + strand, within BBR_RS12860at 634.556 kb on + strand, within BBR_RS12860at 634.666 kb on - strand, within BBR_RS12860at 634.666 kb on - strand, within BBR_RS12860at 634.669 kb on + strand, within BBR_RS12860at 634.669 kb on + strand, within BBR_RS12860at 634.669 kb on + strand, within BBR_RS12860at 634.677 kb on - strand, within BBR_RS12860at 634.677 kb on - strand, within BBR_RS12860at 634.677 kb on - strand, within BBR_RS12860at 634.677 kb on - strand, within BBR_RS12860at 634.698 kb on - strand, within BBR_RS12860at 634.699 kb on + strand, within BBR_RS12860

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Amoxicillin 0.003 mM
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632,313 + BBR_RS12850 0.22 +0.2
632,314 + BBR_RS12850 0.22 -1.3
632,314 + BBR_RS12850 0.22 -0.7
632,316 - BBR_RS12850 0.22 +0.6
632,321 - BBR_RS12850 0.22 -0.9
632,321 - BBR_RS12850 0.22 +0.5
632,321 - BBR_RS12850 0.22 +1.1
632,321 - BBR_RS12850 0.22 -0.3
632,322 - BBR_RS12850 0.23 -0.0
632,342 - BBR_RS12850 0.24 +0.2
632,349 + BBR_RS12850 0.25 -0.1
632,419 + BBR_RS12850 0.30 -0.1
632,422 - BBR_RS12850 0.30 +0.0
632,431 + BBR_RS12850 0.31 +0.4
632,431 + BBR_RS12850 0.31 -0.4
632,431 + BBR_RS12850 0.31 -0.2
632,431 + BBR_RS12850 0.31 +0.0
632,431 + BBR_RS12850 0.31 -1.2
632,431 + BBR_RS12850 0.31 -0.9
632,431 + BBR_RS12850 0.31 -0.9
632,431 + BBR_RS12850 0.31 +0.3
632,432 - BBR_RS12850 0.31 +0.7
632,432 - BBR_RS12850 0.31 -0.8
632,439 - BBR_RS12850 0.32 +0.2
632,439 - BBR_RS12850 0.32 -1.4
632,448 - BBR_RS12850 0.33 +0.7
632,456 - BBR_RS12850 0.33 -0.5
632,456 - BBR_RS12850 0.33 -0.1
632,482 - BBR_RS12850 0.35 -0.0
632,488 + BBR_RS12850 0.36 +1.7
632,491 - BBR_RS12850 0.36 +0.1
632,508 - BBR_RS12850 0.37 -0.8
632,508 - BBR_RS12850 0.37 -0.6
632,510 + BBR_RS12850 0.37 +1.9
632,518 - BBR_RS12850 0.38 +1.5
632,518 - BBR_RS12850 0.38 +1.4
632,530 + BBR_RS12850 0.39 -0.3
632,559 + BBR_RS12850 0.41 -0.4
632,572 + BBR_RS12850 0.42 +2.1
632,572 + BBR_RS12850 0.42 -0.4
632,580 - BBR_RS12850 0.43 +1.6
632,588 + BBR_RS12850 0.44 +1.1
632,622 - BBR_RS12850 0.46 +0.4
632,622 - BBR_RS12850 0.46 +1.2
632,647 + BBR_RS12850 0.48 -0.2
632,667 + BBR_RS12850 0.50 -0.3
632,700 + BBR_RS12850 0.53 +0.1
632,721 - BBR_RS12850 0.54 +0.3
632,721 - BBR_RS12850 0.54 -0.9
632,727 + BBR_RS12850 0.55 -0.6
632,727 + BBR_RS12850 0.55 +0.9
632,732 + BBR_RS12850 0.55 -0.2
632,766 + BBR_RS12850 0.58 +0.6
632,766 + BBR_RS12850 0.58 -0.9
632,774 - BBR_RS12850 0.58 +0.0
632,790 - BBR_RS12850 0.60 +0.3
632,807 + BBR_RS12850 0.61 -1.2
632,809 - BBR_RS12850 0.61 -1.8
632,836 + BBR_RS12850 0.63 -2.0
632,844 - BBR_RS12850 0.64 -1.0
632,849 - BBR_RS12850 0.64 +0.6
632,849 - BBR_RS12850 0.64 +0.1
632,884 - BBR_RS12850 0.67 -0.3
632,889 - BBR_RS12850 0.68 +0.5
632,933 + BBR_RS12850 0.71 -0.2
632,933 + BBR_RS12850 0.71 -0.6
632,938 + BBR_RS12850 0.72 +0.7
632,938 + BBR_RS12850 0.72 +0.2
632,941 - BBR_RS12850 0.72 -0.2
632,941 - BBR_RS12850 0.72 +0.2
632,979 + BBR_RS12850 0.75 +0.2
633,008 - BBR_RS12850 0.77 +0.7
633,048 + BBR_RS12850 0.80 -0.3
633,048 + BBR_RS12850 0.80 -0.3
633,048 + BBR_RS12850 0.80 +0.2
633,065 + BBR_RS12850 0.82 +0.2
633,070 + BBR_RS12850 0.82 -0.2
633,071 - BBR_RS12850 0.82 -0.8
633,078 - BBR_RS12850 0.83 +1.4
633,078 - BBR_RS12850 0.83 +0.4
633,116 + BBR_RS12850 0.86 -1.7
633,126 - BBR_RS12850 0.86 +0.1
633,126 - BBR_RS12850 0.86 +0.4
633,149 + BBR_RS12850 0.88 +0.9
633,149 + BBR_RS12850 0.88 -0.3
633,197 + -0.7
633,239 + -0.8
633,259 + +0.4
633,259 + +1.2
633,259 + +0.8
633,259 + +0.5
633,264 + -1.2
633,267 - +0.4
633,267 - +0.4
633,267 - +1.6
633,267 - -0.1
633,267 - +0.2
633,267 - +1.1
633,267 - +0.1
633,267 - +1.7
633,272 - +0.1
633,284 - -0.4
633,288 + +0.2
633,288 + +0.6
633,288 + -0.5
633,290 + +1.0
633,295 + +1.1
633,298 - +0.3
633,298 - -0.1
633,299 + -0.5
633,307 + -1.7
633,307 + +0.3
633,315 - -0.1
633,315 - -0.2
633,329 - -1.3
633,329 - -0.5
633,356 - BBR_RS12855 0.11 +0.3
633,357 + BBR_RS12855 0.11 +0.2
633,359 + BBR_RS12855 0.12 -0.2
633,361 + BBR_RS12855 0.12 +1.2
633,379 + BBR_RS12855 0.17 +0.9
633,379 + BBR_RS12855 0.17 +0.3
633,379 + BBR_RS12855 0.17 -0.4
633,379 + BBR_RS12855 0.17 +0.4
633,379 + BBR_RS12855 0.17 -0.1
633,564 - BBR_RS12855 0.63 +0.3
633,648 - BBR_RS12855 0.84 +1.4
633,697 - +1.2
633,707 - -1.7
633,727 - -0.8
633,733 + +1.2
633,736 - +0.0
633,742 + +0.9
633,747 + +0.7
633,751 - -0.7
633,805 + -0.2
633,818 - -0.4
633,875 + +0.5
633,901 + BBR_RS12860 0.11 -0.8
633,904 - BBR_RS12860 0.12 -0.1
633,910 + BBR_RS12860 0.12 -1.2
633,911 + BBR_RS12860 0.12 +1.1
633,918 - BBR_RS12860 0.13 +0.8
633,919 - BBR_RS12860 0.13 -1.1
633,927 + BBR_RS12860 0.13 -0.7
633,946 + BBR_RS12860 0.15 -0.8
633,951 + BBR_RS12860 0.15 -1.4
633,954 - BBR_RS12860 0.16 -1.0
633,964 - BBR_RS12860 0.16 +1.4
634,024 - BBR_RS12860 0.21 -0.8
634,031 + BBR_RS12860 0.22 -1.0
634,035 + BBR_RS12860 0.22 -0.2
634,039 - BBR_RS12860 0.22 -0.7
634,049 - BBR_RS12860 0.23 -1.3
634,049 - BBR_RS12860 0.23 +0.2
634,118 + BBR_RS12860 0.29 -1.0
634,162 + BBR_RS12860 0.32 -1.9
634,170 - BBR_RS12860 0.33 +1.1
634,185 - BBR_RS12860 0.34 +0.1
634,191 + BBR_RS12860 0.34 +0.3
634,191 + BBR_RS12860 0.34 -1.5
634,244 - BBR_RS12860 0.39 -1.1
634,246 + BBR_RS12860 0.39 -2.0
634,246 + BBR_RS12860 0.39 -1.9
634,254 - BBR_RS12860 0.39 -0.8
634,272 + BBR_RS12860 0.41 -0.7
634,272 - BBR_RS12860 0.41 -1.4
634,291 + BBR_RS12860 0.42 -0.4
634,299 - BBR_RS12860 0.43 -1.8
634,299 - BBR_RS12860 0.43 -0.4
634,315 + BBR_RS12860 0.44 -1.9
634,338 + BBR_RS12860 0.46 -0.7
634,379 + BBR_RS12860 0.49 -0.6
634,379 + BBR_RS12860 0.49 +0.7
634,379 + BBR_RS12860 0.49 -0.5
634,379 + BBR_RS12860 0.49 +0.3
634,387 - BBR_RS12860 0.50 -0.8
634,387 - BBR_RS12860 0.50 +0.0
634,387 - BBR_RS12860 0.50 -0.6
634,390 - BBR_RS12860 0.50 +0.2
634,397 - BBR_RS12860 0.51 -1.6
634,397 - BBR_RS12860 0.51 -1.6
634,399 + BBR_RS12860 0.51 -1.8
634,407 - BBR_RS12860 0.52 -1.1
634,407 - BBR_RS12860 0.52 +0.8
634,407 - BBR_RS12860 0.52 -0.7
634,415 + BBR_RS12860 0.52 -0.6
634,425 - BBR_RS12860 0.53 -0.5
634,435 - BBR_RS12860 0.54 -0.0
634,471 - BBR_RS12860 0.57 -0.5
634,528 - BBR_RS12860 0.61 -1.3
634,528 - BBR_RS12860 0.61 +0.5
634,533 + BBR_RS12860 0.62 -0.9
634,546 + BBR_RS12860 0.63 -0.6
634,556 + BBR_RS12860 0.63 -1.2
634,666 - BBR_RS12860 0.72 +1.0
634,666 - BBR_RS12860 0.72 -0.4
634,669 + BBR_RS12860 0.72 -0.4
634,669 + BBR_RS12860 0.72 -0.8
634,669 + BBR_RS12860 0.72 -1.2
634,677 - BBR_RS12860 0.73 +1.0
634,677 - BBR_RS12860 0.73 -0.2
634,677 - BBR_RS12860 0.73 -1.2
634,677 - BBR_RS12860 0.73 +0.3
634,698 - BBR_RS12860 0.75 -0.7
634,699 + BBR_RS12860 0.75 -1.7

Or see this region's nucleotide sequence