Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12505

Experiment: Recovery broth with Amoxicillin 0.003 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12500 and BBR_RS12505 are separated by 52 nucleotidesBBR_RS12505 and BBR_RS12510 are separated by 167 nucleotides BBR_RS12500: BBR_RS12500 - sugar ABC transporter permease, at 556,964 to 557,911 _RS12500 BBR_RS12505: BBR_RS12505 - ABC transporter permease, at 557,964 to 558,962 _RS12505 BBR_RS12510: BBR_RS12510 - beta-galactosidase, at 559,130 to 561,262 _RS12510 Position (kb) 557 558 559Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 556.997 kb on - strandat 557.012 kb on + strandat 557.012 kb on + strandat 557.012 kb on + strandat 557.024 kb on + strandat 557.024 kb on + strandat 557.024 kb on + strandat 557.024 kb on + strandat 557.024 kb on + strandat 557.024 kb on + strandat 557.024 kb on + strandat 557.024 kb on + strandat 557.024 kb on + strandat 557.024 kb on + strandat 557.025 kb on - strandat 557.032 kb on - strandat 557.052 kb on - strandat 557.052 kb on - strandat 557.081 kb on - strand, within BBR_RS12500at 558.799 kb on + strand, within BBR_RS12505at 558.823 kb on + strand, within BBR_RS12505at 558.951 kb on + strandat 558.963 kb on + strandat 558.972 kb on + strandat 558.979 kb on - strandat 558.983 kb on + strandat 558.983 kb on + strandat 559.001 kb on + strandat 559.018 kb on - strandat 559.024 kb on + strandat 559.024 kb on + strandat 559.047 kb on + strandat 559.052 kb on + strandat 559.052 kb on + strandat 559.061 kb on - strandat 559.061 kb on - strandat 559.070 kb on + strandat 559.093 kb on - strandat 559.096 kb on - strandat 559.104 kb on - strandat 559.137 kb on + strandat 559.137 kb on + strandat 559.145 kb on + strandat 559.190 kb on + strandat 559.204 kb on + strandat 559.209 kb on + strandat 559.217 kb on - strandat 559.221 kb on + strandat 559.221 kb on + strandat 559.259 kb on + strandat 559.272 kb on - strandat 559.292 kb on + strandat 559.303 kb on + strandat 559.308 kb on + strandat 559.308 kb on + strandat 559.308 kb on + strandat 559.309 kb on + strandat 559.311 kb on - strandat 559.318 kb on + strandat 559.393 kb on - strand, within BBR_RS12510at 559.393 kb on - strand, within BBR_RS12510at 559.393 kb on - strand, within BBR_RS12510at 559.405 kb on + strand, within BBR_RS12510at 559.429 kb on + strand, within BBR_RS12510at 559.429 kb on + strand, within BBR_RS12510at 559.440 kb on + strand, within BBR_RS12510at 559.448 kb on - strand, within BBR_RS12510at 559.455 kb on + strand, within BBR_RS12510at 559.463 kb on - strand, within BBR_RS12510at 559.470 kb on - strand, within BBR_RS12510at 559.472 kb on - strand, within BBR_RS12510at 559.472 kb on - strand, within BBR_RS12510at 559.497 kb on + strand, within BBR_RS12510at 559.515 kb on + strand, within BBR_RS12510at 559.567 kb on + strand, within BBR_RS12510at 559.567 kb on + strand, within BBR_RS12510at 559.578 kb on + strand, within BBR_RS12510at 559.578 kb on + strand, within BBR_RS12510at 559.578 kb on + strand, within BBR_RS12510at 559.578 kb on + strand, within BBR_RS12510at 559.586 kb on - strand, within BBR_RS12510at 559.586 kb on - strand, within BBR_RS12510at 559.592 kb on + strand, within BBR_RS12510at 559.600 kb on - strand, within BBR_RS12510at 559.627 kb on + strand, within BBR_RS12510at 559.641 kb on - strand, within BBR_RS12510at 559.646 kb on - strand, within BBR_RS12510at 559.672 kb on + strand, within BBR_RS12510at 559.692 kb on - strand, within BBR_RS12510at 559.692 kb on - strand, within BBR_RS12510at 559.717 kb on + strand, within BBR_RS12510at 559.717 kb on + strand, within BBR_RS12510at 559.717 kb on + strand, within BBR_RS12510at 559.723 kb on + strand, within BBR_RS12510at 559.724 kb on + strand, within BBR_RS12510at 559.726 kb on - strand, within BBR_RS12510at 559.727 kb on - strand, within BBR_RS12510at 559.767 kb on - strand, within BBR_RS12510at 559.779 kb on - strand, within BBR_RS12510at 559.795 kb on + strand, within BBR_RS12510at 559.800 kb on + strand, within BBR_RS12510at 559.808 kb on + strand, within BBR_RS12510at 559.818 kb on + strand, within BBR_RS12510at 559.861 kb on + strand, within BBR_RS12510at 559.876 kb on - strand, within BBR_RS12510at 559.880 kb on + strand, within BBR_RS12510at 559.885 kb on + strand, within BBR_RS12510at 559.893 kb on - strand, within BBR_RS12510at 559.893 kb on - strand, within BBR_RS12510at 559.915 kb on + strand, within BBR_RS12510at 559.926 kb on + strand, within BBR_RS12510at 559.926 kb on + strand, within BBR_RS12510at 559.929 kb on - strand, within BBR_RS12510at 559.933 kb on + strand, within BBR_RS12510at 559.934 kb on - strand, within BBR_RS12510at 559.934 kb on - strand, within BBR_RS12510at 559.934 kb on - strand, within BBR_RS12510at 559.934 kb on - strand, within BBR_RS12510at 559.945 kb on + strand, within BBR_RS12510at 559.948 kb on - strand, within BBR_RS12510at 559.948 kb on - strand, within BBR_RS12510at 559.948 kb on - strand, within BBR_RS12510at 559.948 kb on - strand, within BBR_RS12510at 559.948 kb on - strand, within BBR_RS12510at 559.948 kb on - strand, within BBR_RS12510at 559.958 kb on - strand, within BBR_RS12510

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Amoxicillin 0.003 mM
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556,997 - -0.1
557,012 + +1.5
557,012 + +0.3
557,012 + +1.4
557,024 + -1.0
557,024 + +0.3
557,024 + +0.3
557,024 + -0.4
557,024 + -0.0
557,024 + -0.4
557,024 + -2.8
557,024 + -0.4
557,024 + +0.2
557,024 + +0.5
557,025 - -0.5
557,032 - -0.9
557,052 - +0.4
557,052 - +0.7
557,081 - BBR_RS12500 0.12 +1.4
558,799 + BBR_RS12505 0.84 +0.2
558,823 + BBR_RS12505 0.86 +0.7
558,951 + -0.6
558,963 + +0.7
558,972 + -0.4
558,979 - +0.2
558,983 + -0.2
558,983 + +0.7
559,001 + -0.4
559,018 - -0.1
559,024 + +0.2
559,024 + +0.7
559,047 + -0.5
559,052 + -0.1
559,052 + -1.5
559,061 - -0.0
559,061 - -0.6
559,070 + -0.0
559,093 - -0.0
559,096 - -0.6
559,104 - -0.3
559,137 + +0.0
559,137 + +0.4
559,145 + -0.0
559,190 + +0.5
559,204 + +0.0
559,209 + -0.2
559,217 - -0.2
559,221 + -0.3
559,221 + +0.6
559,259 + +0.8
559,272 - +0.7
559,292 + -0.2
559,303 + -0.1
559,308 + -0.8
559,308 + -0.3
559,308 + -0.6
559,309 + +0.2
559,311 - +0.2
559,318 + +0.8
559,393 - BBR_RS12510 0.12 +0.6
559,393 - BBR_RS12510 0.12 +0.5
559,393 - BBR_RS12510 0.12 -0.4
559,405 + BBR_RS12510 0.13 +0.6
559,429 + BBR_RS12510 0.14 -1.1
559,429 + BBR_RS12510 0.14 -0.8
559,440 + BBR_RS12510 0.15 +0.1
559,448 - BBR_RS12510 0.15 -0.4
559,455 + BBR_RS12510 0.15 +1.1
559,463 - BBR_RS12510 0.16 -0.1
559,470 - BBR_RS12510 0.16 +0.1
559,472 - BBR_RS12510 0.16 -1.7
559,472 - BBR_RS12510 0.16 +0.4
559,497 + BBR_RS12510 0.17 +0.1
559,515 + BBR_RS12510 0.18 -0.4
559,567 + BBR_RS12510 0.20 +0.2
559,567 + BBR_RS12510 0.20 +0.9
559,578 + BBR_RS12510 0.21 -0.1
559,578 + BBR_RS12510 0.21 +0.2
559,578 + BBR_RS12510 0.21 -0.4
559,578 + BBR_RS12510 0.21 +0.3
559,586 - BBR_RS12510 0.21 +1.0
559,586 - BBR_RS12510 0.21 +1.2
559,592 + BBR_RS12510 0.22 +0.3
559,600 - BBR_RS12510 0.22 -0.2
559,627 + BBR_RS12510 0.23 -0.5
559,641 - BBR_RS12510 0.24 +1.4
559,646 - BBR_RS12510 0.24 -0.1
559,672 + BBR_RS12510 0.25 +0.2
559,692 - BBR_RS12510 0.26 +0.4
559,692 - BBR_RS12510 0.26 -0.5
559,717 + BBR_RS12510 0.28 -0.1
559,717 + BBR_RS12510 0.28 +0.3
559,717 + BBR_RS12510 0.28 +0.3
559,723 + BBR_RS12510 0.28 +1.1
559,724 + BBR_RS12510 0.28 -0.4
559,726 - BBR_RS12510 0.28 +1.0
559,727 - BBR_RS12510 0.28 -0.6
559,767 - BBR_RS12510 0.30 +0.2
559,779 - BBR_RS12510 0.30 +0.3
559,795 + BBR_RS12510 0.31 +1.1
559,800 + BBR_RS12510 0.31 +0.9
559,808 + BBR_RS12510 0.32 +0.1
559,818 + BBR_RS12510 0.32 -0.4
559,861 + BBR_RS12510 0.34 +0.4
559,876 - BBR_RS12510 0.35 +0.5
559,880 + BBR_RS12510 0.35 -0.2
559,885 + BBR_RS12510 0.35 +0.3
559,893 - BBR_RS12510 0.36 +0.6
559,893 - BBR_RS12510 0.36 +0.1
559,915 + BBR_RS12510 0.37 -0.1
559,926 + BBR_RS12510 0.37 -1.1
559,926 + BBR_RS12510 0.37 +2.1
559,929 - BBR_RS12510 0.37 -1.4
559,933 + BBR_RS12510 0.38 +0.8
559,934 - BBR_RS12510 0.38 +0.8
559,934 - BBR_RS12510 0.38 -1.1
559,934 - BBR_RS12510 0.38 -0.1
559,934 - BBR_RS12510 0.38 -0.2
559,945 + BBR_RS12510 0.38 -0.7
559,948 - BBR_RS12510 0.38 +1.1
559,948 - BBR_RS12510 0.38 -0.4
559,948 - BBR_RS12510 0.38 -0.1
559,948 - BBR_RS12510 0.38 -0.4
559,948 - BBR_RS12510 0.38 -1.2
559,948 - BBR_RS12510 0.38 +0.9
559,958 - BBR_RS12510 0.39 -0.4

Or see this region's nucleotide sequence