Experiment: Recovery broth with Amoxicillin 0.003 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS11355 and BBR_RS11360 are separated by 259 nucleotides
BBR_RS11355: BBR_RS11355 - hypothetical protein, at 298,636 to 299,016
_RS11355
BBR_RS11360: BBR_RS11360 - restriction endonuclease, at 299,276 to 299,590
_RS11360
Position (kb) 298
299
300 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 297.644 kb on + strand at 297.649 kb on + strand at 297.649 kb on + strand at 297.649 kb on + strand at 297.649 kb on + strand at 297.652 kb on - strand at 297.659 kb on + strand at 297.688 kb on + strand at 297.694 kb on + strand at 297.698 kb on + strand at 297.701 kb on + strand at 297.704 kb on + strand at 297.709 kb on - strand at 297.714 kb on - strand at 297.720 kb on + strand at 297.720 kb on + strand at 297.720 kb on + strand at 297.720 kb on + strand at 297.720 kb on + strand at 297.724 kb on - strand at 297.724 kb on - strand at 297.728 kb on - strand at 297.730 kb on + strand at 297.733 kb on + strand at 297.733 kb on + strand at 297.733 kb on + strand at 297.739 kb on - strand at 297.741 kb on - strand at 297.741 kb on - strand at 297.741 kb on - strand at 297.749 kb on + strand at 297.766 kb on + strand at 297.767 kb on + strand at 297.767 kb on + strand at 297.835 kb on + strand at 297.836 kb on - strand at 297.843 kb on - strand at 297.914 kb on + strand at 297.922 kb on - strand at 297.962 kb on - strand at 297.962 kb on - strand at 297.972 kb on - strand at 297.973 kb on - strand at 297.973 kb on - strand at 297.995 kb on - strand at 297.998 kb on + strand at 297.998 kb on + strand at 298.002 kb on + strand at 298.002 kb on + strand at 298.005 kb on + strand at 298.023 kb on + strand at 298.023 kb on + strand at 298.044 kb on + strand at 298.062 kb on + strand at 298.069 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on + strand at 298.077 kb on - strand at 298.077 kb on - strand at 298.077 kb on - strand at 298.077 kb on - strand at 298.077 kb on - strand at 298.077 kb on - strand at 298.077 kb on - strand at 298.078 kb on - strand at 298.079 kb on + strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.085 kb on - strand at 298.087 kb on - strand at 298.123 kb on - strand at 298.123 kb on - strand at 298.206 kb on + strand at 298.248 kb on + strand at 298.253 kb on + strand at 298.279 kb on + strand at 298.340 kb on + strand at 298.348 kb on + strand at 298.348 kb on - strand at 298.356 kb on - strand at 298.356 kb on - strand at 298.356 kb on - strand at 298.373 kb on + strand at 298.380 kb on + strand at 298.380 kb on + strand at 298.407 kb on + strand at 298.414 kb on - strand at 298.415 kb on - strand at 298.434 kb on - strand at 298.439 kb on - strand at 298.552 kb on - strand at 298.585 kb on - strand at 298.656 kb on + strand at 298.656 kb on + strand at 298.656 kb on + strand at 298.656 kb on + strand at 298.656 kb on + strand at 298.656 kb on + strand at 298.657 kb on + strand at 298.664 kb on - strand at 298.664 kb on - strand at 298.664 kb on - strand at 298.664 kb on - strand at 298.678 kb on + strand, within BBR_RS11355 at 298.680 kb on + strand, within BBR_RS11355 at 298.686 kb on - strand, within BBR_RS11355 at 298.688 kb on + strand, within BBR_RS11355 at 298.688 kb on + strand, within BBR_RS11355 at 298.717 kb on + strand, within BBR_RS11355 at 298.722 kb on + strand, within BBR_RS11355 at 298.753 kb on + strand, within BBR_RS11355 at 298.753 kb on + strand, within BBR_RS11355 at 298.753 kb on + strand, within BBR_RS11355 at 298.766 kb on - strand, within BBR_RS11355 at 298.766 kb on - strand, within BBR_RS11355 at 298.789 kb on + strand, within BBR_RS11355 at 298.797 kb on - strand, within BBR_RS11355 at 298.797 kb on - strand, within BBR_RS11355 at 298.812 kb on + strand, within BBR_RS11355 at 298.848 kb on + strand, within BBR_RS11355 at 298.848 kb on + strand, within BBR_RS11355 at 298.851 kb on + strand, within BBR_RS11355 at 298.853 kb on + strand, within BBR_RS11355 at 298.861 kb on - strand, within BBR_RS11355 at 298.861 kb on - strand, within BBR_RS11355 at 298.867 kb on - strand, within BBR_RS11355 at 298.874 kb on - strand, within BBR_RS11355 at 298.956 kb on + strand, within BBR_RS11355 at 298.956 kb on + strand, within BBR_RS11355 at 298.980 kb on + strand at 298.983 kb on + strand at 298.983 kb on + strand at 298.983 kb on + strand at 298.995 kb on + strand at 298.995 kb on + strand at 298.997 kb on - strand at 298.997 kb on - strand at 299.003 kb on + strand at 299.003 kb on - strand at 299.003 kb on - strand at 299.049 kb on + strand at 299.060 kb on + strand at 299.060 kb on + strand at 299.060 kb on + strand at 299.060 kb on + strand at 299.070 kb on + strand at 299.077 kb on - strand at 299.102 kb on + strand at 299.115 kb on + strand at 299.150 kb on + strand at 299.150 kb on + strand at 299.167 kb on + strand at 299.167 kb on + strand at 299.169 kb on + strand at 299.213 kb on + strand at 299.213 kb on + strand at 299.216 kb on - strand at 299.223 kb on + strand at 299.236 kb on + strand at 299.236 kb on + strand at 299.239 kb on - strand at 299.241 kb on + strand at 299.246 kb on + strand at 299.254 kb on - strand at 299.255 kb on + strand at 299.265 kb on + strand at 299.265 kb on + strand at 299.266 kb on - strand at 299.266 kb on - strand at 299.270 kb on + strand at 299.270 kb on + strand at 299.272 kb on - strand at 299.273 kb on - strand at 299.278 kb on - strand at 299.278 kb on - strand at 299.292 kb on + strand at 299.292 kb on + strand at 299.302 kb on - strand at 299.310 kb on - strand, within BBR_RS11360 at 299.314 kb on - strand, within BBR_RS11360 at 299.328 kb on + strand, within BBR_RS11360 at 299.328 kb on + strand, within BBR_RS11360 at 299.346 kb on + strand, within BBR_RS11360 at 299.357 kb on + strand, within BBR_RS11360 at 299.365 kb on - strand, within BBR_RS11360 at 299.365 kb on - strand, within BBR_RS11360 at 299.376 kb on + strand, within BBR_RS11360 at 299.384 kb on - strand, within BBR_RS11360 at 299.405 kb on - strand, within BBR_RS11360 at 299.406 kb on + strand, within BBR_RS11360 at 299.407 kb on + strand, within BBR_RS11360 at 299.420 kb on - strand, within BBR_RS11360 at 299.456 kb on + strand, within BBR_RS11360 at 299.465 kb on - strand, within BBR_RS11360 at 299.473 kb on + strand, within BBR_RS11360 at 299.475 kb on - strand, within BBR_RS11360 at 299.476 kb on - strand, within BBR_RS11360 at 299.480 kb on + strand, within BBR_RS11360 at 299.482 kb on + strand, within BBR_RS11360 at 299.490 kb on - strand, within BBR_RS11360 at 299.498 kb on - strand, within BBR_RS11360 at 299.520 kb on - strand, within BBR_RS11360 at 299.520 kb on - strand, within BBR_RS11360 at 299.543 kb on + strand, within BBR_RS11360 at 299.543 kb on + strand, within BBR_RS11360 at 299.551 kb on + strand, within BBR_RS11360 at 299.551 kb on + strand, within BBR_RS11360 at 299.575 kb on + strand at 299.583 kb on - strand at 299.583 kb on - strand at 299.583 kb on - strand at 299.593 kb on - strand at 299.593 kb on - strand at 299.601 kb on - strand at 299.601 kb on - strand at 299.621 kb on + strand at 299.621 kb on + strand at 299.629 kb on - strand at 299.645 kb on + strand at 299.685 kb on + strand at 299.693 kb on - strand at 299.711 kb on + strand at 299.719 kb on - strand at 299.737 kb on + strand at 299.739 kb on + strand at 299.753 kb on + strand at 299.754 kb on - strand at 299.761 kb on - strand at 299.761 kb on - strand at 299.787 kb on + strand at 299.804 kb on + strand at 299.850 kb on + strand at 299.856 kb on - strand at 299.866 kb on + strand at 299.891 kb on + strand at 299.891 kb on + strand at 299.891 kb on + strand at 299.891 kb on + strand at 299.899 kb on - strand at 299.906 kb on + strand at 299.906 kb on + strand at 299.943 kb on + strand at 299.950 kb on - strand at 299.954 kb on + strand at 299.954 kb on + strand at 299.959 kb on + strand at 299.959 kb on + strand at 299.964 kb on + strand at 299.967 kb on - strand at 299.967 kb on - strand at 300.004 kb on + strand at 300.012 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Recovery broth with Amoxicillin 0.003 mM remove 297,644 + +0.2 297,649 + +0.4 297,649 + +0.5 297,649 + -0.8 297,649 + -0.3 297,652 - +0.6 297,659 + +1.6 297,688 + +0.4 297,694 + +0.7 297,698 + -0.5 297,701 + +0.3 297,704 + -0.0 297,709 - +0.6 297,714 - +1.0 297,720 + +0.0 297,720 + -0.6 297,720 + +0.2 297,720 + +0.0 297,720 + +0.7 297,724 - +0.4 297,724 - -0.6 297,728 - +0.2 297,730 + -1.5 297,733 + +0.3 297,733 + +0.1 297,733 + -1.3 297,739 - +1.1 297,741 - -0.3 297,741 - +0.1 297,741 - +0.2 297,749 + -0.5 297,766 + -1.6 297,767 + -0.3 297,767 + -0.6 297,835 + -1.0 297,836 - +1.2 297,843 - -0.2 297,914 + +0.5 297,922 - -1.3 297,962 - +0.2 297,962 - +0.5 297,972 - -0.6 297,973 - -0.4 297,973 - -1.2 297,995 - +0.1 297,998 + +0.9 297,998 + -0.7 298,002 + -0.5 298,002 + -2.1 298,005 + -0.5 298,023 + +0.5 298,023 + +0.5 298,044 + -1.3 298,062 + +0.2 298,069 + -1.8 298,077 + +0.4 298,077 + -0.1 298,077 + +0.5 298,077 + -0.9 298,077 + +0.5 298,077 + -1.1 298,077 + -0.1 298,077 + +0.1 298,077 + -1.3 298,077 + +0.8 298,077 + -0.5 298,077 + +0.4 298,077 + -2.8 298,077 - -0.3 298,077 - +0.9 298,077 - +0.2 298,077 - -0.3 298,077 - -0.2 298,077 - +1.3 298,077 - +1.1 298,078 - -0.6 298,079 + -1.0 298,085 - +0.5 298,085 - +0.7 298,085 - +0.7 298,085 - +0.0 298,085 - +1.1 298,085 - +0.1 298,085 - -0.8 298,085 - -0.8 298,085 - -0.2 298,085 - -0.4 298,085 - +1.1 298,085 - +0.0 298,085 - +0.3 298,085 - -0.1 298,085 - +0.1 298,085 - +0.9 298,085 - -0.2 298,085 - +0.1 298,085 - +0.0 298,085 - +0.4 298,085 - -0.7 298,085 - +0.2 298,085 - +0.0 298,085 - -0.6 298,085 - -1.0 298,085 - -0.1 298,087 - -0.8 298,123 - -1.1 298,123 - +0.4 298,206 + +0.0 298,248 + -0.2 298,253 + +1.0 298,279 + -1.1 298,340 + +0.5 298,348 + +1.5 298,348 - -0.4 298,356 - +0.0 298,356 - -0.9 298,356 - -0.3 298,373 + -0.5 298,380 + -0.1 298,380 + +0.1 298,407 + -0.1 298,414 - +0.3 298,415 - -0.4 298,434 - +0.7 298,439 - -0.2 298,552 - +0.1 298,585 - -0.4 298,656 + -1.0 298,656 + -2.0 298,656 + -1.5 298,656 + -0.2 298,656 + -0.2 298,656 + +1.4 298,657 + +0.2 298,664 - -0.1 298,664 - -0.0 298,664 - -0.8 298,664 - -0.2 298,678 + BBR_RS11355 0.11 -0.3 298,680 + BBR_RS11355 0.12 +0.1 298,686 - BBR_RS11355 0.13 -0.2 298,688 + BBR_RS11355 0.14 +0.1 298,688 + BBR_RS11355 0.14 +0.3 298,717 + BBR_RS11355 0.21 +0.3 298,722 + BBR_RS11355 0.23 +0.2 298,753 + BBR_RS11355 0.31 +1.5 298,753 + BBR_RS11355 0.31 +0.8 298,753 + BBR_RS11355 0.31 +1.4 298,766 - BBR_RS11355 0.34 -0.7 298,766 - BBR_RS11355 0.34 -0.4 298,789 + BBR_RS11355 0.40 -0.6 298,797 - BBR_RS11355 0.42 -1.7 298,797 - BBR_RS11355 0.42 +1.1 298,812 + BBR_RS11355 0.46 +2.0 298,848 + BBR_RS11355 0.56 -0.5 298,848 + BBR_RS11355 0.56 +0.3 298,851 + BBR_RS11355 0.56 +0.5 298,853 + BBR_RS11355 0.57 +0.0 298,861 - BBR_RS11355 0.59 +3.1 298,861 - BBR_RS11355 0.59 -0.3 298,867 - BBR_RS11355 0.61 +1.2 298,874 - BBR_RS11355 0.62 +0.4 298,956 + BBR_RS11355 0.84 +0.3 298,956 + BBR_RS11355 0.84 -0.0 298,980 + -1.3 298,983 + +0.6 298,983 + +0.3 298,983 + -1.2 298,995 + +0.6 298,995 + +0.3 298,997 - -1.2 298,997 - -0.0 299,003 + +0.2 299,003 - +0.3 299,003 - -0.7 299,049 + +0.0 299,060 + +0.4 299,060 + -0.7 299,060 + -0.4 299,060 + +0.3 299,070 + -0.2 299,077 - +0.5 299,102 + +0.6 299,115 + -1.0 299,150 + -0.4 299,150 + -0.6 299,167 + -0.5 299,167 + -1.4 299,169 + +0.7 299,213 + -0.4 299,213 + +0.1 299,216 - -0.4 299,223 + +0.7 299,236 + +0.2 299,236 + -0.4 299,239 - -0.2 299,241 + +1.3 299,246 + -0.4 299,254 - +0.2 299,255 + +0.3 299,265 + +0.2 299,265 + -0.9 299,266 - -0.0 299,266 - -0.3 299,270 + -0.3 299,270 + -0.5 299,272 - +0.0 299,273 - +1.1 299,278 - -0.1 299,278 - +0.5 299,292 + -0.4 299,292 + +0.6 299,302 - -0.6 299,310 - BBR_RS11360 0.11 +0.1 299,314 - BBR_RS11360 0.12 +0.9 299,328 + BBR_RS11360 0.17 -0.2 299,328 + BBR_RS11360 0.17 +1.2 299,346 + BBR_RS11360 0.22 -0.7 299,357 + BBR_RS11360 0.26 -0.7 299,365 - BBR_RS11360 0.28 -0.8 299,365 - BBR_RS11360 0.28 -0.1 299,376 + BBR_RS11360 0.32 -0.3 299,384 - BBR_RS11360 0.34 -0.7 299,405 - BBR_RS11360 0.41 -1.2 299,406 + BBR_RS11360 0.41 +1.0 299,407 + BBR_RS11360 0.42 -0.4 299,420 - BBR_RS11360 0.46 +0.4 299,456 + BBR_RS11360 0.57 -0.2 299,465 - BBR_RS11360 0.60 +0.4 299,473 + BBR_RS11360 0.63 -0.6 299,475 - BBR_RS11360 0.63 +3.2 299,476 - BBR_RS11360 0.63 -1.9 299,480 + BBR_RS11360 0.65 -0.7 299,482 + BBR_RS11360 0.65 -0.1 299,490 - BBR_RS11360 0.68 -0.7 299,498 - BBR_RS11360 0.70 -1.2 299,520 - BBR_RS11360 0.77 -0.4 299,520 - BBR_RS11360 0.77 -0.1 299,543 + BBR_RS11360 0.85 +1.1 299,543 + BBR_RS11360 0.85 +0.7 299,551 + BBR_RS11360 0.87 +0.5 299,551 + BBR_RS11360 0.87 +0.5 299,575 + +0.0 299,583 - -0.9 299,583 - -0.7 299,583 - -0.6 299,593 - -0.6 299,593 - +0.1 299,601 - +0.2 299,601 - -1.4 299,621 + +0.2 299,621 + -0.1 299,629 - +0.3 299,645 + +0.0 299,685 + -2.3 299,693 - -0.7 299,711 + +0.4 299,719 - -1.1 299,737 + +0.3 299,739 + +0.4 299,753 + -0.1 299,754 - +0.3 299,761 - +0.0 299,761 - -0.7 299,787 + -1.1 299,804 + +0.9 299,850 + +0.4 299,856 - -1.2 299,866 + -0.5 299,891 + -0.4 299,891 + -2.4 299,891 + -0.3 299,891 + -0.4 299,899 - +0.1 299,906 + +0.0 299,906 + -1.0 299,943 + -0.1 299,950 - +1.6 299,954 + +0.3 299,954 + -0.7 299,959 + -0.2 299,959 + +1.0 299,964 + +0.3 299,967 - -0.1 299,967 - -0.2 300,004 + -0.2 300,012 + -1.4
Or see this region's nucleotide sequence