Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18080

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18070 and ABZR86_RS18075 are separated by 200 nucleotidesABZR86_RS18075 and ABZR86_RS18080 are separated by 7 nucleotidesABZR86_RS18080 and ABZR86_RS18085 are separated by 195 nucleotidesABZR86_RS18085 and ABZR86_RS18090 are separated by 25 nucleotidesABZR86_RS18090 and ABZR86_RS18095 are separated by 3 nucleotides ABZR86_RS18070: ABZR86_RS18070 - META and DUF4377 domain-containing protein, at 30,140 to 30,967 _RS18070 ABZR86_RS18075: ABZR86_RS18075 - alpha/beta hydrolase, at 31,168 to 31,857 _RS18075 ABZR86_RS18080: ABZR86_RS18080 - sulfotransferase, at 31,865 to 32,791 _RS18080 ABZR86_RS18085: ABZR86_RS18085 - putative toxin-antitoxin system toxin component, PIN family, at 32,987 to 33,463 _RS18085 ABZR86_RS18090: ABZR86_RS18090 - CPXCG motif-containing cysteine-rich protein, at 33,489 to 33,674 _RS18090 ABZR86_RS18095: ABZR86_RS18095 - bifunctional nicotinamidase/pyrazinamidase, at 33,678 to 34,328 _RS18095 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1at 30.978 kb on + strandat 31.059 kb on + strandat 31.120 kb on - strandat 31.335 kb on + strand, within ABZR86_RS18075at 31.335 kb on + strand, within ABZR86_RS18075at 31.429 kb on + strand, within ABZR86_RS18075at 31.429 kb on + strand, within ABZR86_RS18075at 31.429 kb on + strand, within ABZR86_RS18075at 31.429 kb on + strand, within ABZR86_RS18075at 31.429 kb on + strand, within ABZR86_RS18075at 31.429 kb on + strand, within ABZR86_RS18075at 31.430 kb on - strand, within ABZR86_RS18075at 31.558 kb on + strand, within ABZR86_RS18075at 31.558 kb on + strand, within ABZR86_RS18075at 31.560 kb on + strand, within ABZR86_RS18075at 31.650 kb on + strand, within ABZR86_RS18075at 31.650 kb on + strand, within ABZR86_RS18075at 31.807 kb on + strandat 31.962 kb on + strand, within ABZR86_RS18080at 31.962 kb on + strand, within ABZR86_RS18080at 31.963 kb on - strand, within ABZR86_RS18080at 31.963 kb on - strand, within ABZR86_RS18080at 32.206 kb on - strand, within ABZR86_RS18080at 32.227 kb on - strand, within ABZR86_RS18080at 32.586 kb on + strand, within ABZR86_RS18080at 32.912 kb on + strandat 33.023 kb on + strandat 33.478 kb on - strandat 33.507 kb on + strandat 33.507 kb on + strandat 33.507 kb on + strandat 33.507 kb on + strandat 33.508 kb on - strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.570 kb on + strand, within ABZR86_RS18090at 33.571 kb on - strand, within ABZR86_RS18090at 33.571 kb on - strand, within ABZR86_RS18090at 33.571 kb on - strand, within ABZR86_RS18090at 33.571 kb on - strand, within ABZR86_RS18090at 33.571 kb on - strand, within ABZR86_RS18090

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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30,978 + -0.4
31,059 + +0.0
31,120 - +0.7
31,335 + ABZR86_RS18075 0.24 -0.6
31,335 + ABZR86_RS18075 0.24 -0.4
31,429 + ABZR86_RS18075 0.38 -0.3
31,429 + ABZR86_RS18075 0.38 +0.2
31,429 + ABZR86_RS18075 0.38 -0.1
31,429 + ABZR86_RS18075 0.38 +0.5
31,429 + ABZR86_RS18075 0.38 -0.6
31,429 + ABZR86_RS18075 0.38 +0.3
31,430 - ABZR86_RS18075 0.38 -0.1
31,558 + ABZR86_RS18075 0.57 +0.4
31,558 + ABZR86_RS18075 0.57 -0.7
31,560 + ABZR86_RS18075 0.57 -1.2
31,650 + ABZR86_RS18075 0.70 +0.2
31,650 + ABZR86_RS18075 0.70 -0.2
31,807 + -0.3
31,962 + ABZR86_RS18080 0.10 +0.2
31,962 + ABZR86_RS18080 0.10 +1.0
31,963 - ABZR86_RS18080 0.11 -1.2
31,963 - ABZR86_RS18080 0.11 -0.7
32,206 - ABZR86_RS18080 0.37 -0.6
32,227 - ABZR86_RS18080 0.39 +0.8
32,586 + ABZR86_RS18080 0.78 -0.3
32,912 + -0.9
33,023 + -0.1
33,478 - +0.0
33,507 + -0.4
33,507 + +0.0
33,507 + -0.4
33,507 + -0.5
33,508 - ABZR86_RS18090 0.10 +0.8
33,570 + ABZR86_RS18090 0.44 -0.1
33,570 + ABZR86_RS18090 0.44 +0.3
33,570 + ABZR86_RS18090 0.44 +0.1
33,570 + ABZR86_RS18090 0.44 -0.3
33,570 + ABZR86_RS18090 0.44 -0.3
33,570 + ABZR86_RS18090 0.44 +0.2
33,570 + ABZR86_RS18090 0.44 -0.5
33,570 + ABZR86_RS18090 0.44 -0.8
33,570 + ABZR86_RS18090 0.44 -0.7
33,570 + ABZR86_RS18090 0.44 +0.5
33,570 + ABZR86_RS18090 0.44 -0.2
33,570 + ABZR86_RS18090 0.44 -0.2
33,570 + ABZR86_RS18090 0.44 -0.2
33,571 - ABZR86_RS18090 0.44 -1.9
33,571 - ABZR86_RS18090 0.44 -0.0
33,571 - ABZR86_RS18090 0.44 +0.3
33,571 - ABZR86_RS18090 0.44 -0.9
33,571 - ABZR86_RS18090 0.44 -0.4

Or see this region's nucleotide sequence