Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS15425 and ABZR86_RS15430 overlap by 4 nucleotides ABZR86_RS15430 and ABZR86_RS15435 are separated by 137 nucleotides
ABZR86_RS15425: ABZR86_RS15425 - serine hydrolase, at 3,469,804 to 3,470,934
_RS15425
ABZR86_RS15430: ABZR86_RS15430 - winged helix-turn-helix transcriptional regulator, at 3,470,931 to 3,472,508
_RS15430
ABZR86_RS15435: ABZR86_RS15435 - undecaprenyl-diphosphate phosphatase, at 3,472,646 to 3,473,443
_RS15435
Position (kb)
3470
3471
3472
3473 Strain fitness (log2 ratio)
-1
0
1 at 3469.931 kb on + strand, within ABZR86_RS15425 at 3469.931 kb on + strand, within ABZR86_RS15425 at 3469.931 kb on + strand, within ABZR86_RS15425 at 3469.931 kb on + strand, within ABZR86_RS15425 at 3469.931 kb on + strand, within ABZR86_RS15425 at 3469.931 kb on + strand, within ABZR86_RS15425 at 3469.931 kb on + strand, within ABZR86_RS15425 at 3469.931 kb on + strand, within ABZR86_RS15425 at 3469.932 kb on - strand, within ABZR86_RS15425 at 3469.932 kb on - strand, within ABZR86_RS15425 at 3469.932 kb on - strand, within ABZR86_RS15425 at 3469.932 kb on - strand, within ABZR86_RS15425 at 3469.932 kb on - strand, within ABZR86_RS15425 at 3469.987 kb on + strand, within ABZR86_RS15425 at 3469.987 kb on + strand, within ABZR86_RS15425 at 3469.988 kb on - strand, within ABZR86_RS15425 at 3469.988 kb on - strand, within ABZR86_RS15425 at 3469.988 kb on - strand, within ABZR86_RS15425 at 3469.988 kb on - strand, within ABZR86_RS15425 at 3469.988 kb on - strand, within ABZR86_RS15425 at 3470.035 kb on + strand, within ABZR86_RS15425 at 3470.035 kb on + strand, within ABZR86_RS15425 at 3470.035 kb on + strand, within ABZR86_RS15425 at 3470.035 kb on + strand, within ABZR86_RS15425 at 3470.311 kb on + strand, within ABZR86_RS15425 at 3470.311 kb on + strand, within ABZR86_RS15425 at 3470.311 kb on + strand, within ABZR86_RS15425 at 3470.311 kb on + strand, within ABZR86_RS15425 at 3470.312 kb on - strand, within ABZR86_RS15425 at 3470.312 kb on - strand, within ABZR86_RS15425 at 3470.312 kb on - strand, within ABZR86_RS15425 at 3470.312 kb on - strand, within ABZR86_RS15425 at 3470.312 kb on - strand, within ABZR86_RS15425 at 3470.312 kb on - strand, within ABZR86_RS15425 at 3470.416 kb on + strand, within ABZR86_RS15425 at 3470.716 kb on + strand, within ABZR86_RS15425 at 3470.716 kb on + strand, within ABZR86_RS15425 at 3470.716 kb on + strand, within ABZR86_RS15425 at 3470.717 kb on - strand, within ABZR86_RS15425 at 3470.722 kb on + strand, within ABZR86_RS15425 at 3470.722 kb on + strand, within ABZR86_RS15425 at 3470.722 kb on + strand, within ABZR86_RS15425 at 3470.723 kb on - strand, within ABZR86_RS15425 at 3470.723 kb on - strand, within ABZR86_RS15425 at 3470.800 kb on + strand, within ABZR86_RS15425 at 3470.800 kb on + strand, within ABZR86_RS15425 at 3470.800 kb on + strand, within ABZR86_RS15425 at 3470.801 kb on - strand, within ABZR86_RS15425 at 3470.801 kb on - strand, within ABZR86_RS15425 at 3470.801 kb on - strand, within ABZR86_RS15425 at 3470.854 kb on + strand at 3470.854 kb on + strand at 3470.855 kb on - strand at 3470.855 kb on - strand at 3470.855 kb on - strand at 3470.855 kb on - strand at 3470.902 kb on + strand at 3470.902 kb on + strand at 3470.902 kb on + strand at 3470.903 kb on - strand at 3470.903 kb on - strand at 3471.031 kb on + strand at 3471.080 kb on - strand at 3471.080 kb on - strand at 3471.095 kb on - strand, within ABZR86_RS15430 at 3471.114 kb on - strand, within ABZR86_RS15430 at 3471.271 kb on + strand, within ABZR86_RS15430 at 3471.271 kb on + strand, within ABZR86_RS15430 at 3471.271 kb on + strand, within ABZR86_RS15430 at 3471.271 kb on + strand, within ABZR86_RS15430 at 3471.274 kb on - strand, within ABZR86_RS15430 at 3471.391 kb on + strand, within ABZR86_RS15430 at 3471.391 kb on + strand, within ABZR86_RS15430 at 3471.392 kb on - strand, within ABZR86_RS15430 at 3471.392 kb on - strand, within ABZR86_RS15430 at 3471.392 kb on - strand, within ABZR86_RS15430 at 3471.677 kb on - strand, within ABZR86_RS15430 at 3471.683 kb on - strand, within ABZR86_RS15430 at 3471.747 kb on + strand, within ABZR86_RS15430 at 3471.748 kb on - strand, within ABZR86_RS15430 at 3471.871 kb on + strand, within ABZR86_RS15430 at 3471.883 kb on + strand, within ABZR86_RS15430 at 3471.883 kb on + strand, within ABZR86_RS15430 at 3471.884 kb on - strand, within ABZR86_RS15430 at 3471.884 kb on - strand, within ABZR86_RS15430 at 3471.904 kb on + strand, within ABZR86_RS15430 at 3472.016 kb on - strand, within ABZR86_RS15430 at 3472.018 kb on + strand, within ABZR86_RS15430 at 3472.019 kb on - strand, within ABZR86_RS15430 at 3472.243 kb on + strand, within ABZR86_RS15430 at 3472.244 kb on - strand, within ABZR86_RS15430 at 3472.520 kb on + strand at 3472.521 kb on - strand at 3472.521 kb on - strand at 3472.521 kb on - strand at 3472.534 kb on + strand at 3472.534 kb on + strand at 3472.534 kb on + strand at 3472.535 kb on - strand at 3472.535 kb on - strand at 3472.543 kb on - strand at 3472.632 kb on + strand at 3473.475 kb on + strand at 3473.476 kb on - strand at 3473.476 kb on - strand at 3473.476 kb on - strand at 3473.480 kb on + strand at 3473.481 kb on - strand at 3473.481 kb on - strand at 3473.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 3,469,931 + ABZR86_RS15425 0.11 -0.1 3,469,931 + ABZR86_RS15425 0.11 -0.3 3,469,931 + ABZR86_RS15425 0.11 +0.3 3,469,931 + ABZR86_RS15425 0.11 +0.8 3,469,931 + ABZR86_RS15425 0.11 -0.1 3,469,931 + ABZR86_RS15425 0.11 -0.5 3,469,931 + ABZR86_RS15425 0.11 -0.3 3,469,931 + ABZR86_RS15425 0.11 +0.1 3,469,932 - ABZR86_RS15425 0.11 -0.0 3,469,932 - ABZR86_RS15425 0.11 -0.3 3,469,932 - ABZR86_RS15425 0.11 -0.4 3,469,932 - ABZR86_RS15425 0.11 -0.6 3,469,932 - ABZR86_RS15425 0.11 +0.4 3,469,987 + ABZR86_RS15425 0.16 -0.2 3,469,987 + ABZR86_RS15425 0.16 -0.4 3,469,988 - ABZR86_RS15425 0.16 +0.1 3,469,988 - ABZR86_RS15425 0.16 -0.6 3,469,988 - ABZR86_RS15425 0.16 +0.3 3,469,988 - ABZR86_RS15425 0.16 -0.5 3,469,988 - ABZR86_RS15425 0.16 +0.8 3,470,035 + ABZR86_RS15425 0.20 -0.3 3,470,035 + ABZR86_RS15425 0.20 -0.2 3,470,035 + ABZR86_RS15425 0.20 +0.3 3,470,035 + ABZR86_RS15425 0.20 +0.9 3,470,311 + ABZR86_RS15425 0.45 +0.2 3,470,311 + ABZR86_RS15425 0.45 +0.5 3,470,311 + ABZR86_RS15425 0.45 -0.5 3,470,311 + ABZR86_RS15425 0.45 +0.0 3,470,312 - ABZR86_RS15425 0.45 -0.7 3,470,312 - ABZR86_RS15425 0.45 -0.4 3,470,312 - ABZR86_RS15425 0.45 -0.0 3,470,312 - ABZR86_RS15425 0.45 -0.0 3,470,312 - ABZR86_RS15425 0.45 -0.1 3,470,312 - ABZR86_RS15425 0.45 +0.3 3,470,416 + ABZR86_RS15425 0.54 +0.5 3,470,716 + ABZR86_RS15425 0.81 -0.4 3,470,716 + ABZR86_RS15425 0.81 -0.4 3,470,716 + ABZR86_RS15425 0.81 +0.2 3,470,717 - ABZR86_RS15425 0.81 +0.5 3,470,722 + ABZR86_RS15425 0.81 -0.6 3,470,722 + ABZR86_RS15425 0.81 +0.9 3,470,722 + ABZR86_RS15425 0.81 +0.4 3,470,723 - ABZR86_RS15425 0.81 +0.2 3,470,723 - ABZR86_RS15425 0.81 -0.2 3,470,800 + ABZR86_RS15425 0.88 +0.1 3,470,800 + ABZR86_RS15425 0.88 -0.7 3,470,800 + ABZR86_RS15425 0.88 +0.7 3,470,801 - ABZR86_RS15425 0.88 -0.0 3,470,801 - ABZR86_RS15425 0.88 -0.9 3,470,801 - ABZR86_RS15425 0.88 -0.6 3,470,854 + -0.1 3,470,854 + -1.5 3,470,855 - +0.3 3,470,855 - -0.3 3,470,855 - +0.2 3,470,855 - +0.1 3,470,902 + -0.1 3,470,902 + -0.5 3,470,902 + +0.4 3,470,903 - -0.3 3,470,903 - -0.8 3,471,031 + -0.1 3,471,080 - +1.2 3,471,080 - +0.8 3,471,095 - ABZR86_RS15430 0.10 +0.9 3,471,114 - ABZR86_RS15430 0.12 -0.1 3,471,271 + ABZR86_RS15430 0.22 -0.4 3,471,271 + ABZR86_RS15430 0.22 +0.2 3,471,271 + ABZR86_RS15430 0.22 -1.0 3,471,271 + ABZR86_RS15430 0.22 -0.7 3,471,274 - ABZR86_RS15430 0.22 +0.2 3,471,391 + ABZR86_RS15430 0.29 -0.0 3,471,391 + ABZR86_RS15430 0.29 -0.4 3,471,392 - ABZR86_RS15430 0.29 +0.1 3,471,392 - ABZR86_RS15430 0.29 +0.7 3,471,392 - ABZR86_RS15430 0.29 -1.0 3,471,677 - ABZR86_RS15430 0.47 +0.5 3,471,683 - ABZR86_RS15430 0.48 -0.0 3,471,747 + ABZR86_RS15430 0.52 -0.2 3,471,748 - ABZR86_RS15430 0.52 +0.2 3,471,871 + ABZR86_RS15430 0.60 +0.5 3,471,883 + ABZR86_RS15430 0.60 -0.2 3,471,883 + ABZR86_RS15430 0.60 -0.7 3,471,884 - ABZR86_RS15430 0.60 -0.7 3,471,884 - ABZR86_RS15430 0.60 +0.4 3,471,904 + ABZR86_RS15430 0.62 -0.3 3,472,016 - ABZR86_RS15430 0.69 +0.7 3,472,018 + ABZR86_RS15430 0.69 -1.4 3,472,019 - ABZR86_RS15430 0.69 -0.2 3,472,243 + ABZR86_RS15430 0.83 -0.2 3,472,244 - ABZR86_RS15430 0.83 -0.2 3,472,520 + -0.2 3,472,521 - +0.5 3,472,521 - -1.0 3,472,521 - -0.1 3,472,534 + +0.3 3,472,534 + -1.1 3,472,534 + +0.4 3,472,535 - +0.5 3,472,535 - +0.2 3,472,543 - -0.3 3,472,632 + -0.4 3,473,475 + -0.5 3,473,476 - +0.3 3,473,476 - +0.3 3,473,476 - -0.9 3,473,480 + +1.0 3,473,481 - +0.1 3,473,481 - -0.1 3,473,488 - -0.4
Or see this region's nucleotide sequence