Experiment: Paraquat dichloride 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS09195 and ABZR86_RS09200 are separated by 33 nucleotides ABZR86_RS09200 and ABZR86_RS09205 are separated by 37 nucleotides ABZR86_RS09205 and ABZR86_RS09210 overlap by 4 nucleotides ABZR86_RS09210 and ABZR86_RS09215 are separated by 240 nucleotides
ABZR86_RS09195: ABZR86_RS09195 - PilC/PilY family type IV pilus protein, at 2,043,915 to 2,048,165
_RS09195
ABZR86_RS09200: ABZR86_RS09200 - PilX N-terminal domain-containing pilus assembly protein, at 2,048,199 to 2,048,864
_RS09200
ABZR86_RS09205: ABZR86_RS09205 - PilW family protein, at 2,048,902 to 2,050,296
_RS09205
ABZR86_RS09210: ABZR86_RS09210 - type IV pilus modification protein PilV, at 2,050,293 to 2,050,889
_RS09210
ABZR86_RS09215: ABZR86_RS09215 - GspH/FimT family pseudopilin, at 2,051,130 to 2,051,717
_RS09215
Position (kb)
2048
2049
2050
2051 Strain fitness (log2 ratio)
-2
-1
0
1 at 2047.937 kb on + strand at 2047.938 kb on - strand at 2048.159 kb on + strand at 2048.160 kb on - strand at 2048.186 kb on - strand at 2048.281 kb on + strand, within ABZR86_RS09200 at 2048.395 kb on + strand, within ABZR86_RS09200 at 2048.396 kb on - strand, within ABZR86_RS09200 at 2048.476 kb on + strand, within ABZR86_RS09200 at 2048.477 kb on - strand, within ABZR86_RS09200 at 2048.546 kb on - strand, within ABZR86_RS09200 at 2048.556 kb on - strand, within ABZR86_RS09200 at 2048.857 kb on + strand at 2048.857 kb on + strand at 2048.857 kb on + strand at 2048.858 kb on - strand at 2048.858 kb on - strand at 2048.878 kb on + strand at 2048.878 kb on + strand at 2049.035 kb on + strand at 2049.035 kb on + strand at 2049.035 kb on + strand at 2049.035 kb on + strand at 2049.035 kb on + strand at 2049.036 kb on - strand at 2049.036 kb on - strand at 2049.041 kb on + strand at 2049.041 kb on + strand at 2049.041 kb on + strand at 2049.041 kb on + strand at 2049.068 kb on + strand, within ABZR86_RS09205 at 2049.068 kb on + strand, within ABZR86_RS09205 at 2049.069 kb on - strand, within ABZR86_RS09205 at 2049.069 kb on - strand, within ABZR86_RS09205 at 2049.212 kb on + strand, within ABZR86_RS09205 at 2049.212 kb on + strand, within ABZR86_RS09205 at 2049.212 kb on + strand, within ABZR86_RS09205 at 2049.213 kb on - strand, within ABZR86_RS09205 at 2049.213 kb on - strand, within ABZR86_RS09205 at 2049.213 kb on - strand, within ABZR86_RS09205 at 2049.401 kb on + strand, within ABZR86_RS09205 at 2049.402 kb on - strand, within ABZR86_RS09205 at 2049.484 kb on - strand, within ABZR86_RS09205 at 2049.484 kb on - strand, within ABZR86_RS09205 at 2049.716 kb on + strand, within ABZR86_RS09205 at 2049.869 kb on + strand, within ABZR86_RS09205 at 2049.869 kb on + strand, within ABZR86_RS09205 at 2049.869 kb on + strand, within ABZR86_RS09205 at 2049.869 kb on + strand, within ABZR86_RS09205 at 2049.870 kb on - strand, within ABZR86_RS09205 at 2049.870 kb on - strand, within ABZR86_RS09205 at 2049.884 kb on + strand, within ABZR86_RS09205 at 2049.884 kb on + strand, within ABZR86_RS09205 at 2049.912 kb on + strand, within ABZR86_RS09205 at 2049.912 kb on + strand, within ABZR86_RS09205 at 2049.912 kb on + strand, within ABZR86_RS09205 at 2049.912 kb on + strand, within ABZR86_RS09205 at 2049.912 kb on + strand, within ABZR86_RS09205 at 2049.912 kb on + strand, within ABZR86_RS09205 at 2049.912 kb on + strand, within ABZR86_RS09205 at 2049.912 kb on + strand, within ABZR86_RS09205 at 2049.912 kb on + strand, within ABZR86_RS09205 at 2049.913 kb on - strand, within ABZR86_RS09205 at 2049.913 kb on - strand, within ABZR86_RS09205 at 2049.913 kb on - strand, within ABZR86_RS09205 at 2049.913 kb on - strand, within ABZR86_RS09205 at 2049.913 kb on - strand, within ABZR86_RS09205 at 2049.981 kb on - strand, within ABZR86_RS09205 at 2050.011 kb on - strand, within ABZR86_RS09205 at 2050.061 kb on + strand, within ABZR86_RS09205 at 2050.386 kb on - strand, within ABZR86_RS09210 at 2050.386 kb on - strand, within ABZR86_RS09210 at 2050.386 kb on - strand, within ABZR86_RS09210 at 2050.386 kb on - strand, within ABZR86_RS09210 at 2050.675 kb on + strand, within ABZR86_RS09210 at 2050.676 kb on - strand, within ABZR86_RS09210 at 2050.676 kb on - strand, within ABZR86_RS09210 at 2050.916 kb on + strand at 2050.917 kb on - strand at 2050.935 kb on + strand at 2050.942 kb on + strand at 2050.943 kb on - strand at 2051.011 kb on - strand at 2051.045 kb on - strand at 2051.168 kb on + strand at 2051.169 kb on - strand at 2051.228 kb on + strand, within ABZR86_RS09215
Per-strain Table
Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml remove 2,047,937 + -0.1 2,047,938 - -0.0 2,048,159 + -0.0 2,048,160 - -0.1 2,048,186 - +0.1 2,048,281 + ABZR86_RS09200 0.12 +0.0 2,048,395 + ABZR86_RS09200 0.29 -0.1 2,048,396 - ABZR86_RS09200 0.30 +0.4 2,048,476 + ABZR86_RS09200 0.42 +0.2 2,048,477 - ABZR86_RS09200 0.42 -0.2 2,048,546 - ABZR86_RS09200 0.52 +0.2 2,048,556 - ABZR86_RS09200 0.54 -0.6 2,048,857 + +0.0 2,048,857 + -0.2 2,048,857 + +0.6 2,048,858 - +0.7 2,048,858 - +0.4 2,048,878 + -0.1 2,048,878 + -0.2 2,049,035 + -0.1 2,049,035 + +0.4 2,049,035 + +0.5 2,049,035 + -0.0 2,049,035 + +0.1 2,049,036 - +0.1 2,049,036 - -0.4 2,049,041 + -0.6 2,049,041 + -1.3 2,049,041 + +1.6 2,049,041 + +1.2 2,049,068 + ABZR86_RS09205 0.12 +0.8 2,049,068 + ABZR86_RS09205 0.12 -0.3 2,049,069 - ABZR86_RS09205 0.12 +0.0 2,049,069 - ABZR86_RS09205 0.12 -0.2 2,049,212 + ABZR86_RS09205 0.22 +0.9 2,049,212 + ABZR86_RS09205 0.22 +0.1 2,049,212 + ABZR86_RS09205 0.22 +0.4 2,049,213 - ABZR86_RS09205 0.22 -0.1 2,049,213 - ABZR86_RS09205 0.22 +0.1 2,049,213 - ABZR86_RS09205 0.22 +0.0 2,049,401 + ABZR86_RS09205 0.36 +0.9 2,049,402 - ABZR86_RS09205 0.36 +0.6 2,049,484 - ABZR86_RS09205 0.42 +0.2 2,049,484 - ABZR86_RS09205 0.42 +0.6 2,049,716 + ABZR86_RS09205 0.58 -0.6 2,049,869 + ABZR86_RS09205 0.69 -0.1 2,049,869 + ABZR86_RS09205 0.69 -0.3 2,049,869 + ABZR86_RS09205 0.69 -0.7 2,049,869 + ABZR86_RS09205 0.69 -0.4 2,049,870 - ABZR86_RS09205 0.69 +0.1 2,049,870 - ABZR86_RS09205 0.69 +0.8 2,049,884 + ABZR86_RS09205 0.70 -0.0 2,049,884 + ABZR86_RS09205 0.70 -0.2 2,049,912 + ABZR86_RS09205 0.72 +0.0 2,049,912 + ABZR86_RS09205 0.72 -0.1 2,049,912 + ABZR86_RS09205 0.72 -0.2 2,049,912 + ABZR86_RS09205 0.72 -1.8 2,049,912 + ABZR86_RS09205 0.72 -0.4 2,049,912 + ABZR86_RS09205 0.72 -0.4 2,049,912 + ABZR86_RS09205 0.72 +0.4 2,049,912 + ABZR86_RS09205 0.72 +0.0 2,049,912 + ABZR86_RS09205 0.72 +0.4 2,049,913 - ABZR86_RS09205 0.72 +0.3 2,049,913 - ABZR86_RS09205 0.72 -0.1 2,049,913 - ABZR86_RS09205 0.72 +0.3 2,049,913 - ABZR86_RS09205 0.72 -1.7 2,049,913 - ABZR86_RS09205 0.72 -0.1 2,049,981 - ABZR86_RS09205 0.77 -0.3 2,050,011 - ABZR86_RS09205 0.79 -0.1 2,050,061 + ABZR86_RS09205 0.83 +0.2 2,050,386 - ABZR86_RS09210 0.16 -0.3 2,050,386 - ABZR86_RS09210 0.16 -0.4 2,050,386 - ABZR86_RS09210 0.16 +0.5 2,050,386 - ABZR86_RS09210 0.16 -0.3 2,050,675 + ABZR86_RS09210 0.64 +0.3 2,050,676 - ABZR86_RS09210 0.64 -0.9 2,050,676 - ABZR86_RS09210 0.64 +0.3 2,050,916 + +0.4 2,050,917 - +0.8 2,050,935 + +0.1 2,050,942 + -0.6 2,050,943 - +1.4 2,051,011 - +0.0 2,051,045 - -0.2 2,051,168 + -0.3 2,051,169 - +0.2 2,051,228 + ABZR86_RS09215 0.17 -0.3
Or see this region's nucleotide sequence