Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08585

Experiment: Paraquat dichloride 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08580 and ABZR86_RS08585 are separated by 493 nucleotidesABZR86_RS08585 and ABZR86_RS08590 are separated by 19 nucleotides ABZR86_RS08580: ABZR86_RS08580 - PAS-domain containing protein, at 1,919,554 to 1,922,853 _RS08580 ABZR86_RS08585: ABZR86_RS08585 - PHB depolymerase family esterase, at 1,923,347 to 1,924,378 _RS08585 ABZR86_RS08590: ABZR86_RS08590 - TonB-dependent receptor, at 1,924,398 to 1,926,608 _RS08590 Position (kb) 1923 1924 1925Strain fitness (log2 ratio) -1 0 1at 1922.373 kb on - strand, within ABZR86_RS08580at 1922.373 kb on - strand, within ABZR86_RS08580at 1922.373 kb on - strand, within ABZR86_RS08580at 1922.468 kb on + strand, within ABZR86_RS08580at 1922.469 kb on - strand, within ABZR86_RS08580at 1922.570 kb on + strandat 1922.621 kb on + strandat 1922.621 kb on + strandat 1922.621 kb on + strandat 1922.621 kb on + strandat 1922.622 kb on - strandat 1922.622 kb on - strandat 1922.694 kb on - strandat 1922.735 kb on + strandat 1923.424 kb on - strandat 1923.424 kb on - strandat 1923.438 kb on + strandat 1923.501 kb on + strand, within ABZR86_RS08585at 1923.501 kb on + strand, within ABZR86_RS08585at 1923.520 kb on - strand, within ABZR86_RS08585at 1923.520 kb on - strand, within ABZR86_RS08585at 1923.651 kb on + strand, within ABZR86_RS08585at 1923.652 kb on - strand, within ABZR86_RS08585at 1923.652 kb on - strand, within ABZR86_RS08585at 1923.652 kb on - strand, within ABZR86_RS08585at 1923.657 kb on + strand, within ABZR86_RS08585at 1923.657 kb on + strand, within ABZR86_RS08585at 1923.657 kb on + strand, within ABZR86_RS08585at 1923.657 kb on + strand, within ABZR86_RS08585at 1923.657 kb on + strand, within ABZR86_RS08585at 1923.658 kb on - strand, within ABZR86_RS08585at 1923.658 kb on - strand, within ABZR86_RS08585at 1923.658 kb on - strand, within ABZR86_RS08585at 1923.658 kb on - strand, within ABZR86_RS08585at 1923.658 kb on - strand, within ABZR86_RS08585at 1923.658 kb on - strand, within ABZR86_RS08585at 1923.699 kb on + strand, within ABZR86_RS08585at 1923.700 kb on - strand, within ABZR86_RS08585at 1923.766 kb on - strand, within ABZR86_RS08585at 1923.817 kb on - strand, within ABZR86_RS08585at 1923.897 kb on + strand, within ABZR86_RS08585at 1923.898 kb on - strand, within ABZR86_RS08585at 1924.011 kb on + strand, within ABZR86_RS08585at 1924.011 kb on + strand, within ABZR86_RS08585at 1924.012 kb on - strand, within ABZR86_RS08585at 1924.209 kb on + strand, within ABZR86_RS08585at 1924.236 kb on + strand, within ABZR86_RS08585at 1924.236 kb on + strand, within ABZR86_RS08585at 1924.237 kb on - strand, within ABZR86_RS08585at 1924.378 kb on + strandat 1924.379 kb on - strandat 1924.444 kb on + strandat 1924.444 kb on + strandat 1924.445 kb on - strandat 1924.478 kb on + strandat 1924.478 kb on + strandat 1924.479 kb on - strandat 1924.479 kb on - strandat 1924.480 kb on + strandat 1924.506 kb on - strandat 1924.640 kb on - strand, within ABZR86_RS08590at 1924.640 kb on - strand, within ABZR86_RS08590at 1924.640 kb on - strand, within ABZR86_RS08590at 1924.645 kb on + strand, within ABZR86_RS08590at 1924.645 kb on + strand, within ABZR86_RS08590at 1924.646 kb on - strand, within ABZR86_RS08590at 1924.646 kb on - strand, within ABZR86_RS08590at 1924.646 kb on - strand, within ABZR86_RS08590at 1924.646 kb on - strand, within ABZR86_RS08590at 1924.688 kb on - strand, within ABZR86_RS08590at 1924.784 kb on - strand, within ABZR86_RS08590at 1924.784 kb on - strand, within ABZR86_RS08590at 1924.930 kb on + strand, within ABZR86_RS08590at 1924.964 kb on - strand, within ABZR86_RS08590at 1924.964 kb on - strand, within ABZR86_RS08590at 1924.964 kb on - strand, within ABZR86_RS08590at 1924.967 kb on + strand, within ABZR86_RS08590at 1924.967 kb on + strand, within ABZR86_RS08590at 1924.968 kb on - strand, within ABZR86_RS08590at 1924.968 kb on - strand, within ABZR86_RS08590at 1924.968 kb on - strand, within ABZR86_RS08590at 1924.985 kb on + strand, within ABZR86_RS08590at 1924.986 kb on - strand, within ABZR86_RS08590at 1925.134 kb on + strand, within ABZR86_RS08590at 1925.134 kb on + strand, within ABZR86_RS08590at 1925.135 kb on - strand, within ABZR86_RS08590at 1925.272 kb on + strand, within ABZR86_RS08590at 1925.272 kb on + strand, within ABZR86_RS08590

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Per-strain Table

Position Strand Gene LocusTag Fraction Paraquat dichloride 0.05 mg/ml
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1,922,373 - ABZR86_RS08580 0.85 -0.1
1,922,373 - ABZR86_RS08580 0.85 -0.3
1,922,373 - ABZR86_RS08580 0.85 +0.2
1,922,468 + ABZR86_RS08580 0.88 +0.5
1,922,469 - ABZR86_RS08580 0.88 +0.7
1,922,570 + +0.3
1,922,621 + +0.2
1,922,621 + -0.4
1,922,621 + -0.2
1,922,621 + -1.1
1,922,622 - +0.4
1,922,622 - -0.4
1,922,694 - +0.3
1,922,735 + +0.1
1,923,424 - +0.0
1,923,424 - -0.3
1,923,438 + -0.9
1,923,501 + ABZR86_RS08585 0.15 -0.9
1,923,501 + ABZR86_RS08585 0.15 -0.1
1,923,520 - ABZR86_RS08585 0.17 -0.0
1,923,520 - ABZR86_RS08585 0.17 +0.6
1,923,651 + ABZR86_RS08585 0.29 -0.1
1,923,652 - ABZR86_RS08585 0.30 +0.2
1,923,652 - ABZR86_RS08585 0.30 -0.0
1,923,652 - ABZR86_RS08585 0.30 -0.1
1,923,657 + ABZR86_RS08585 0.30 +0.2
1,923,657 + ABZR86_RS08585 0.30 -0.0
1,923,657 + ABZR86_RS08585 0.30 +0.4
1,923,657 + ABZR86_RS08585 0.30 -0.5
1,923,657 + ABZR86_RS08585 0.30 -0.4
1,923,658 - ABZR86_RS08585 0.30 -0.6
1,923,658 - ABZR86_RS08585 0.30 -0.6
1,923,658 - ABZR86_RS08585 0.30 -0.1
1,923,658 - ABZR86_RS08585 0.30 +0.2
1,923,658 - ABZR86_RS08585 0.30 +0.1
1,923,658 - ABZR86_RS08585 0.30 -0.2
1,923,699 + ABZR86_RS08585 0.34 -0.8
1,923,700 - ABZR86_RS08585 0.34 +0.3
1,923,766 - ABZR86_RS08585 0.41 -0.2
1,923,817 - ABZR86_RS08585 0.46 +0.7
1,923,897 + ABZR86_RS08585 0.53 -1.1
1,923,898 - ABZR86_RS08585 0.53 +1.2
1,924,011 + ABZR86_RS08585 0.64 -0.5
1,924,011 + ABZR86_RS08585 0.64 +0.1
1,924,012 - ABZR86_RS08585 0.64 -0.4
1,924,209 + ABZR86_RS08585 0.84 -0.4
1,924,236 + ABZR86_RS08585 0.86 +0.7
1,924,236 + ABZR86_RS08585 0.86 +0.5
1,924,237 - ABZR86_RS08585 0.86 +1.0
1,924,378 + +0.7
1,924,379 - -0.4
1,924,444 + -0.5
1,924,444 + +0.1
1,924,445 - -1.0
1,924,478 + -0.8
1,924,478 + +0.8
1,924,479 - -1.7
1,924,479 - -0.7
1,924,480 + +0.2
1,924,506 - -0.7
1,924,640 - ABZR86_RS08590 0.11 +0.1
1,924,640 - ABZR86_RS08590 0.11 -0.8
1,924,640 - ABZR86_RS08590 0.11 +0.4
1,924,645 + ABZR86_RS08590 0.11 -0.5
1,924,645 + ABZR86_RS08590 0.11 +0.1
1,924,646 - ABZR86_RS08590 0.11 -0.7
1,924,646 - ABZR86_RS08590 0.11 +0.5
1,924,646 - ABZR86_RS08590 0.11 +0.7
1,924,646 - ABZR86_RS08590 0.11 -0.1
1,924,688 - ABZR86_RS08590 0.13 +0.3
1,924,784 - ABZR86_RS08590 0.17 -0.1
1,924,784 - ABZR86_RS08590 0.17 -0.4
1,924,930 + ABZR86_RS08590 0.24 -0.0
1,924,964 - ABZR86_RS08590 0.26 +0.7
1,924,964 - ABZR86_RS08590 0.26 -0.0
1,924,964 - ABZR86_RS08590 0.26 +0.1
1,924,967 + ABZR86_RS08590 0.26 +0.2
1,924,967 + ABZR86_RS08590 0.26 +0.5
1,924,968 - ABZR86_RS08590 0.26 +0.2
1,924,968 - ABZR86_RS08590 0.26 +0.9
1,924,968 - ABZR86_RS08590 0.26 +0.7
1,924,985 + ABZR86_RS08590 0.27 -0.7
1,924,986 - ABZR86_RS08590 0.27 -0.6
1,925,134 + ABZR86_RS08590 0.33 -0.1
1,925,134 + ABZR86_RS08590 0.33 +0.2
1,925,135 - ABZR86_RS08590 0.33 -0.5
1,925,272 + ABZR86_RS08590 0.40 +0.1
1,925,272 + ABZR86_RS08590 0.40 -0.0

Or see this region's nucleotide sequence