Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04390 and SMc04391 are separated by 205 nucleotides SMc04391 and SMc04392 overlap by 4 nucleotides
SMc04390: SMc04390 - L-sorbose dehydrogenase, FAD dependent protein, at 3,592,577 to 3,594,232
SMc04390
SMc04391: SMc04391 - 3-ketoacyl-ACP reductase, at 3,594,438 to 3,595,211
SMc04391
SMc04392: SMc04392 - dehydrogenase transmembrane protein, at 3,595,208 to 3,596,716
SMc04392
Position (kb)
3594
3595
3596 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3593.686 kb on - strand, within SMc04390 at 3593.686 kb on - strand, within SMc04390 at 3593.686 kb on - strand, within SMc04390 at 3593.686 kb on - strand, within SMc04390 at 3593.762 kb on - strand, within SMc04390 at 3593.764 kb on - strand, within SMc04390 at 3593.764 kb on - strand, within SMc04390 at 3593.764 kb on - strand, within SMc04390 at 3593.764 kb on - strand, within SMc04390 at 3593.820 kb on + strand, within SMc04390 at 3593.829 kb on + strand, within SMc04390 at 3593.830 kb on - strand, within SMc04390 at 3593.889 kb on + strand, within SMc04390 at 3593.931 kb on + strand, within SMc04390 at 3593.954 kb on - strand, within SMc04390 at 3593.956 kb on - strand, within SMc04390 at 3593.956 kb on - strand, within SMc04390 at 3594.005 kb on - strand, within SMc04390 at 3594.219 kb on + strand at 3594.219 kb on + strand at 3594.220 kb on - strand at 3594.225 kb on + strand at 3594.225 kb on + strand at 3594.226 kb on - strand at 3594.268 kb on + strand at 3594.268 kb on + strand at 3594.268 kb on + strand at 3594.269 kb on - strand at 3594.528 kb on - strand, within SMc04391 at 3594.596 kb on - strand, within SMc04391 at 3594.730 kb on + strand, within SMc04391 at 3595.235 kb on - strand at 3595.353 kb on + strand at 3595.353 kb on + strand at 3595.600 kb on - strand, within SMc04392 at 3595.600 kb on - strand, within SMc04392 at 3595.740 kb on + strand, within SMc04392 at 3595.740 kb on + strand, within SMc04392 at 3595.740 kb on + strand, within SMc04392 at 3595.741 kb on - strand, within SMc04392 at 3595.770 kb on + strand, within SMc04392 at 3595.771 kb on - strand, within SMc04392 at 3595.907 kb on + strand, within SMc04392 at 3595.984 kb on - strand, within SMc04392 at 3596.197 kb on + strand, within SMc04392 at 3596.197 kb on - strand, within SMc04392
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 3,593,686 - SMc04390 0.67 -0.4 3,593,686 - SMc04390 0.67 +0.4 3,593,686 - SMc04390 0.67 +2.2 3,593,686 - SMc04390 0.67 +0.2 3,593,762 - SMc04390 0.72 -0.0 3,593,764 - SMc04390 0.72 -2.2 3,593,764 - SMc04390 0.72 +0.9 3,593,764 - SMc04390 0.72 -0.5 3,593,764 - SMc04390 0.72 +1.9 3,593,820 + SMc04390 0.75 +0.5 3,593,829 + SMc04390 0.76 +0.9 3,593,830 - SMc04390 0.76 +0.8 3,593,889 + SMc04390 0.79 -1.7 3,593,931 + SMc04390 0.82 -0.8 3,593,954 - SMc04390 0.83 -2.7 3,593,956 - SMc04390 0.83 +0.8 3,593,956 - SMc04390 0.83 -0.1 3,594,005 - SMc04390 0.86 -0.9 3,594,219 + +1.3 3,594,219 + -1.1 3,594,220 - +0.7 3,594,225 + -2.5 3,594,225 + -1.6 3,594,226 - +0.9 3,594,268 + +0.2 3,594,268 + -0.3 3,594,268 + +1.4 3,594,269 - -1.1 3,594,528 - SMc04391 0.12 -1.9 3,594,596 - SMc04391 0.20 -1.9 3,594,730 + SMc04391 0.38 -0.4 3,595,235 - +0.2 3,595,353 + -0.1 3,595,353 + +0.1 3,595,600 - SMc04392 0.26 +0.6 3,595,600 - SMc04392 0.26 -3.0 3,595,740 + SMc04392 0.35 -0.5 3,595,740 + SMc04392 0.35 +0.1 3,595,740 + SMc04392 0.35 -1.1 3,595,741 - SMc04392 0.35 -2.8 3,595,770 + SMc04392 0.37 -0.1 3,595,771 - SMc04392 0.37 +4.8 3,595,907 + SMc04392 0.46 +0.3 3,595,984 - SMc04392 0.51 +0.5 3,596,197 + SMc04392 0.66 -1.5 3,596,197 - SMc04392 0.66 +1.5
Or see this region's nucleotide sequence