Strain Fitness in Sinorhizobium meliloti 1021 around SMc04387

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04386 and SMc04387 are separated by 188 nucleotidesSMc04387 and SMc04388 are separated by 145 nucleotides SMc04386: SMc04386 - 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) (from data), at 3,587,663 to 3,588,895 SMc04386 SMc04387: SMc04387 - aldehyde dehydrogenase, at 3,589,084 to 3,589,632 SMc04387 SMc04388: SMc04388 - beta alanine--pyruvate transaminase, at 3,589,778 to 3,591,115 SMc04388 Position (kb) 3589 3590Strain fitness (log2 ratio) -2 -1 0 1 2at 3588.091 kb on + strand, within SMc04386at 3588.234 kb on - strand, within SMc04386at 3588.309 kb on + strand, within SMc04386at 3588.311 kb on + strand, within SMc04386at 3588.311 kb on + strand, within SMc04386at 3588.311 kb on + strand, within SMc04386at 3588.312 kb on - strand, within SMc04386at 3588.312 kb on - strand, within SMc04386at 3588.312 kb on - strand, within SMc04386at 3588.312 kb on - strand, within SMc04386at 3588.312 kb on - strand, within SMc04386at 3588.413 kb on + strand, within SMc04386at 3588.414 kb on - strand, within SMc04386at 3588.665 kb on + strand, within SMc04386at 3588.750 kb on - strand, within SMc04386at 3588.750 kb on - strand, within SMc04386at 3588.824 kb on + strandat 3588.824 kb on + strandat 3588.976 kb on + strandat 3588.977 kb on - strandat 3589.102 kb on - strandat 3589.175 kb on + strand, within SMc04387at 3589.176 kb on - strand, within SMc04387at 3589.305 kb on - strand, within SMc04387at 3589.361 kb on + strand, within SMc04387at 3589.385 kb on + strand, within SMc04387at 3589.406 kb on + strand, within SMc04387at 3589.407 kb on - strand, within SMc04387at 3589.407 kb on - strand, within SMc04387at 3589.466 kb on - strand, within SMc04387at 3589.466 kb on - strand, within SMc04387at 3589.546 kb on - strandat 3589.633 kb on - strandat 3589.696 kb on - strandat 3589.821 kb on - strandat 3589.896 kb on - strandat 3590.174 kb on + strand, within SMc04388

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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3,588,091 + SMc04386 0.35 -0.5
3,588,234 - SMc04386 0.46 -0.6
3,588,309 + SMc04386 0.52 -0.5
3,588,311 + SMc04386 0.53 +0.5
3,588,311 + SMc04386 0.53 +1.7
3,588,311 + SMc04386 0.53 +0.3
3,588,312 - SMc04386 0.53 +2.2
3,588,312 - SMc04386 0.53 -0.5
3,588,312 - SMc04386 0.53 +2.3
3,588,312 - SMc04386 0.53 +1.2
3,588,312 - SMc04386 0.53 -0.6
3,588,413 + SMc04386 0.61 +0.3
3,588,414 - SMc04386 0.61 +0.9
3,588,665 + SMc04386 0.81 -1.9
3,588,750 - SMc04386 0.88 +0.7
3,588,750 - SMc04386 0.88 -0.0
3,588,824 + +0.8
3,588,824 + +1.2
3,588,976 + +0.1
3,588,977 - -0.7
3,589,102 - -2.6
3,589,175 + SMc04387 0.17 -1.4
3,589,176 - SMc04387 0.17 +0.1
3,589,305 - SMc04387 0.40 +0.2
3,589,361 + SMc04387 0.50 +0.2
3,589,385 + SMc04387 0.55 -0.9
3,589,406 + SMc04387 0.59 -1.7
3,589,407 - SMc04387 0.59 -0.5
3,589,407 - SMc04387 0.59 -1.4
3,589,466 - SMc04387 0.70 -1.9
3,589,466 - SMc04387 0.70 -0.9
3,589,546 - -0.1
3,589,633 - +0.6
3,589,696 - +0.7
3,589,821 - +0.4
3,589,896 - +0.5
3,590,174 + SMc04388 0.30 -0.2

Or see this region's nucleotide sequence