Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03964 and SMc03965 are separated by 1 nucleotides SMc03965 and SMc03966 are separated by 171 nucleotides SMc03966 and SMc03967 are separated by 74 nucleotides
SMc03964: SMc03964 - hypothetical protein, at 2,957,972 to 2,958,874
SMc03964
SMc03965: SMc03965 - Holliday junction DNA helicase RuvB, at 2,958,876 to 2,959,916
SMc03965
SMc03966: SMc03966 - Holliday junction DNA helicase RuvA, at 2,960,088 to 2,960,705
SMc03966
SMc03967: SMc03967 - Holliday junction resolvase, at 2,960,780 to 2,961,292
SMc03967
Position (kb)
2958
2959
2960 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2958.080 kb on - strand, within SMc03964 at 2958.080 kb on - strand, within SMc03964 at 2958.080 kb on - strand, within SMc03964 at 2958.080 kb on - strand, within SMc03964 at 2958.087 kb on + strand, within SMc03964 at 2958.087 kb on + strand, within SMc03964 at 2958.088 kb on - strand, within SMc03964 at 2958.171 kb on - strand, within SMc03964 at 2958.230 kb on + strand, within SMc03964 at 2958.230 kb on + strand, within SMc03964 at 2958.567 kb on + strand, within SMc03964 at 2958.568 kb on - strand, within SMc03964 at 2958.568 kb on - strand, within SMc03964 at 2958.598 kb on - strand, within SMc03964 at 2958.650 kb on + strand, within SMc03964 at 2958.651 kb on - strand, within SMc03964 at 2958.651 kb on - strand, within SMc03964 at 2958.759 kb on + strand, within SMc03964 at 2958.805 kb on - strand at 2959.950 kb on + strand at 2960.046 kb on + strand at 2960.551 kb on + strand, within SMc03966 at 2960.765 kb on - strand at 2960.911 kb on + strand, within SMc03967 at 2960.911 kb on + strand, within SMc03967 at 2960.911 kb on + strand, within SMc03967
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 2,958,080 - SMc03964 0.12 -2.8 2,958,080 - SMc03964 0.12 -0.3 2,958,080 - SMc03964 0.12 +0.7 2,958,080 - SMc03964 0.12 +1.6 2,958,087 + SMc03964 0.13 -3.7 2,958,087 + SMc03964 0.13 +0.6 2,958,088 - SMc03964 0.13 +0.6 2,958,171 - SMc03964 0.22 -0.8 2,958,230 + SMc03964 0.29 -1.0 2,958,230 + SMc03964 0.29 -3.3 2,958,567 + SMc03964 0.66 -0.0 2,958,568 - SMc03964 0.66 +0.5 2,958,568 - SMc03964 0.66 -2.8 2,958,598 - SMc03964 0.69 +0.3 2,958,650 + SMc03964 0.75 -0.4 2,958,651 - SMc03964 0.75 -0.7 2,958,651 - SMc03964 0.75 +0.4 2,958,759 + SMc03964 0.87 -0.3 2,958,805 - +0.7 2,959,950 + +0.3 2,960,046 + -0.3 2,960,551 + SMc03966 0.75 -1.5 2,960,765 - -0.5 2,960,911 + SMc03967 0.26 -2.1 2,960,911 + SMc03967 0.26 -1.3 2,960,911 + SMc03967 0.26 -0.3
Or see this region's nucleotide sequence