Strain Fitness in Sinorhizobium meliloti 1021 around SMc03965

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03964 and SMc03965 are separated by 1 nucleotidesSMc03965 and SMc03966 are separated by 171 nucleotidesSMc03966 and SMc03967 are separated by 74 nucleotides SMc03964: SMc03964 - hypothetical protein, at 2,957,972 to 2,958,874 SMc03964 SMc03965: SMc03965 - Holliday junction DNA helicase RuvB, at 2,958,876 to 2,959,916 SMc03965 SMc03966: SMc03966 - Holliday junction DNA helicase RuvA, at 2,960,088 to 2,960,705 SMc03966 SMc03967: SMc03967 - Holliday junction resolvase, at 2,960,780 to 2,961,292 SMc03967 Position (kb) 2958 2959 2960Strain fitness (log2 ratio) -3 -2 -1 0 1at 2958.080 kb on - strand, within SMc03964at 2958.080 kb on - strand, within SMc03964at 2958.080 kb on - strand, within SMc03964at 2958.080 kb on - strand, within SMc03964at 2958.087 kb on + strand, within SMc03964at 2958.087 kb on + strand, within SMc03964at 2958.088 kb on - strand, within SMc03964at 2958.171 kb on - strand, within SMc03964at 2958.230 kb on + strand, within SMc03964at 2958.230 kb on + strand, within SMc03964at 2958.567 kb on + strand, within SMc03964at 2958.568 kb on - strand, within SMc03964at 2958.568 kb on - strand, within SMc03964at 2958.598 kb on - strand, within SMc03964at 2958.650 kb on + strand, within SMc03964at 2958.651 kb on - strand, within SMc03964at 2958.651 kb on - strand, within SMc03964at 2958.759 kb on + strand, within SMc03964at 2958.805 kb on - strandat 2959.950 kb on + strandat 2960.046 kb on + strandat 2960.551 kb on + strand, within SMc03966at 2960.765 kb on - strandat 2960.911 kb on + strand, within SMc03967at 2960.911 kb on + strand, within SMc03967at 2960.911 kb on + strand, within SMc03967

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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2,958,080 - SMc03964 0.12 -2.8
2,958,080 - SMc03964 0.12 -0.3
2,958,080 - SMc03964 0.12 +0.7
2,958,080 - SMc03964 0.12 +1.6
2,958,087 + SMc03964 0.13 -3.7
2,958,087 + SMc03964 0.13 +0.6
2,958,088 - SMc03964 0.13 +0.6
2,958,171 - SMc03964 0.22 -0.8
2,958,230 + SMc03964 0.29 -1.0
2,958,230 + SMc03964 0.29 -3.3
2,958,567 + SMc03964 0.66 -0.0
2,958,568 - SMc03964 0.66 +0.5
2,958,568 - SMc03964 0.66 -2.8
2,958,598 - SMc03964 0.69 +0.3
2,958,650 + SMc03964 0.75 -0.4
2,958,651 - SMc03964 0.75 -0.7
2,958,651 - SMc03964 0.75 +0.4
2,958,759 + SMc03964 0.87 -0.3
2,958,805 - +0.7
2,959,950 + +0.3
2,960,046 + -0.3
2,960,551 + SMc03966 0.75 -1.5
2,960,765 - -0.5
2,960,911 + SMc03967 0.26 -2.1
2,960,911 + SMc03967 0.26 -1.3
2,960,911 + SMc03967 0.26 -0.3

Or see this region's nucleotide sequence