Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03950 and SMc03941 are separated by 317 nucleotides SMc03941 and SMc03942 are separated by 202 nucleotides
SMc03950: SMc03950 - proton-translocating nicotinamide nucleotide transhydrogenase subunit protein, at 3,090,654 to 3,091,802
SMc03950
SMc03941: SMc03941 - hypothetical protein, at 3,092,120 to 3,092,344
SMc03941
SMc03942: SMc03942 - hypothetical protein, at 3,092,547 to 3,094,868
SMc03942
Position (kb)
3092
3093 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3091.185 kb on + strand, within SMc03950 at 3091.186 kb on - strand, within SMc03950 at 3091.351 kb on + strand, within SMc03950 at 3091.351 kb on + strand, within SMc03950 at 3091.352 kb on - strand, within SMc03950 at 3091.352 kb on - strand, within SMc03950 at 3091.510 kb on + strand, within SMc03950 at 3091.510 kb on + strand, within SMc03950 at 3091.511 kb on - strand, within SMc03950 at 3091.511 kb on - strand, within SMc03950 at 3091.648 kb on + strand, within SMc03950 at 3091.945 kb on + strand at 3091.946 kb on - strand at 3091.957 kb on - strand at 3092.247 kb on + strand, within SMc03941 at 3092.248 kb on - strand, within SMc03941 at 3092.274 kb on + strand, within SMc03941 at 3092.275 kb on - strand, within SMc03941 at 3092.393 kb on + strand at 3092.394 kb on - strand at 3092.437 kb on + strand at 3092.437 kb on + strand at 3092.508 kb on - strand at 3092.842 kb on + strand, within SMc03942 at 3092.843 kb on - strand, within SMc03942 at 3092.878 kb on - strand, within SMc03942 at 3093.132 kb on + strand, within SMc03942 at 3093.133 kb on - strand, within SMc03942 at 3093.133 kb on - strand, within SMc03942 at 3093.235 kb on - strand, within SMc03942 at 3093.271 kb on + strand, within SMc03942
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 3,091,185 + SMc03950 0.46 -1.6 3,091,186 - SMc03950 0.46 -2.3 3,091,351 + SMc03950 0.61 +1.2 3,091,351 + SMc03950 0.61 +0.7 3,091,352 - SMc03950 0.61 -0.2 3,091,352 - SMc03950 0.61 -0.4 3,091,510 + SMc03950 0.74 -3.1 3,091,510 + SMc03950 0.74 -0.0 3,091,511 - SMc03950 0.75 -0.6 3,091,511 - SMc03950 0.75 -0.4 3,091,648 + SMc03950 0.87 -1.4 3,091,945 + -0.9 3,091,946 - +0.9 3,091,957 - +3.4 3,092,247 + SMc03941 0.56 -2.5 3,092,248 - SMc03941 0.57 -0.5 3,092,274 + SMc03941 0.68 -2.7 3,092,275 - SMc03941 0.69 -2.2 3,092,393 + -2.4 3,092,394 - +1.4 3,092,437 + -0.6 3,092,437 + +0.8 3,092,508 - -1.6 3,092,842 + SMc03942 0.13 -3.7 3,092,843 - SMc03942 0.13 +1.3 3,092,878 - SMc03942 0.14 -2.1 3,093,132 + SMc03942 0.25 -0.1 3,093,133 - SMc03942 0.25 -1.0 3,093,133 - SMc03942 0.25 +0.4 3,093,235 - SMc03942 0.30 -0.7 3,093,271 + SMc03942 0.31 +0.5
Or see this region's nucleotide sequence