Strain Fitness in Sinorhizobium meliloti 1021 around SMc03785

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03784 and SMc03785 are separated by 84 nucleotidesSMc03785 and SMc03786 are separated by 215 nucleotidesSMc03786 and SMc03787 overlap by 35 nucleotides SMc03784: SMc03784 - hypothetical protein, at 3,449,460 to 3,450,662 SMc03784 SMc03785: SMc03785 - dinucleoside polyphosphate hydrolase, at 3,450,747 to 3,451,250 SMc03785 SMc03786: SMc03786 - bacterioferritin, at 3,451,466 to 3,451,951 SMc03786 SMc03787: SMc03787 - hypothetical protein, at 3,451,917 to 3,452,228 SMc03787 Position (kb) 3450 3451 3452Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3449.788 kb on - strand, within SMc03784at 3449.955 kb on + strand, within SMc03784at 3449.955 kb on + strand, within SMc03784at 3449.956 kb on - strand, within SMc03784at 3449.956 kb on - strand, within SMc03784at 3450.273 kb on + strand, within SMc03784at 3450.273 kb on + strand, within SMc03784at 3450.274 kb on - strand, within SMc03784at 3450.274 kb on - strand, within SMc03784at 3450.274 kb on - strand, within SMc03784at 3450.675 kb on - strandat 3450.735 kb on - strandat 3450.853 kb on - strand, within SMc03785at 3450.939 kb on + strand, within SMc03785at 3450.999 kb on + strand, within SMc03785at 3451.045 kb on - strand, within SMc03785at 3451.209 kb on + strandat 3451.436 kb on + strandat 3451.436 kb on + strandat 3451.467 kb on + strandat 3451.468 kb on - strandat 3451.559 kb on + strand, within SMc03786at 3451.560 kb on - strand, within SMc03786at 3451.611 kb on + strand, within SMc03786at 3451.648 kb on + strand, within SMc03786at 3451.840 kb on + strand, within SMc03786at 3451.840 kb on + strand, within SMc03786at 3451.841 kb on - strand, within SMc03786at 3451.841 kb on - strand, within SMc03786at 3451.843 kb on - strand, within SMc03786at 3451.906 kb on - strandat 3452.007 kb on + strand, within SMc03787at 3452.009 kb on + strand, within SMc03787at 3452.041 kb on + strand, within SMc03787at 3452.041 kb on + strand, within SMc03787at 3452.042 kb on - strand, within SMc03787at 3452.042 kb on - strand, within SMc03787at 3452.042 kb on - strand, within SMc03787at 3452.122 kb on + strand, within SMc03787

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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3,449,788 - SMc03784 0.27 +3.8
3,449,955 + SMc03784 0.41 +1.0
3,449,955 + SMc03784 0.41 +1.7
3,449,956 - SMc03784 0.41 -2.2
3,449,956 - SMc03784 0.41 +0.4
3,450,273 + SMc03784 0.68 +0.0
3,450,273 + SMc03784 0.68 -0.9
3,450,274 - SMc03784 0.68 -0.5
3,450,274 - SMc03784 0.68 -2.0
3,450,274 - SMc03784 0.68 -0.2
3,450,675 - +1.1
3,450,735 - +0.8
3,450,853 - SMc03785 0.21 -0.9
3,450,939 + SMc03785 0.38 -0.0
3,450,999 + SMc03785 0.50 -0.1
3,451,045 - SMc03785 0.59 -0.8
3,451,209 + +0.4
3,451,436 + +0.4
3,451,436 + -0.1
3,451,467 + -0.1
3,451,468 - -0.8
3,451,559 + SMc03786 0.19 +0.6
3,451,560 - SMc03786 0.19 -0.1
3,451,611 + SMc03786 0.30 -0.3
3,451,648 + SMc03786 0.37 +1.0
3,451,840 + SMc03786 0.77 -0.2
3,451,840 + SMc03786 0.77 +0.2
3,451,841 - SMc03786 0.77 -2.5
3,451,841 - SMc03786 0.77 -0.7
3,451,843 - SMc03786 0.78 +0.9
3,451,906 - +0.5
3,452,007 + SMc03787 0.29 +1.0
3,452,009 + SMc03787 0.29 -1.0
3,452,041 + SMc03787 0.40 -0.7
3,452,041 + SMc03787 0.40 -0.0
3,452,042 - SMc03787 0.40 -1.0
3,452,042 - SMc03787 0.40 +0.7
3,452,042 - SMc03787 0.40 -0.6
3,452,122 + SMc03787 0.66 +0.6

Or see this region's nucleotide sequence