Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03248 and SMc03249 overlap by 4 nucleotides SMc03249 and SMc03751 are separated by 76 nucleotides SMc03751 and SMc03250 overlap by 20 nucleotides
SMc03248: SMc03248 - transposase, at 3,361,899 to 3,362,729
SMc03248
SMc03249: SMc03249 - hypothetical protein, at 3,362,726 to 3,362,983
SMc03249
SMc03751: SMc03751 - hypothetical protein, at 3,363,060 to 3,363,509
SMc03751
SMc03250: SMc03250 - hypothetical protein, at 3,363,490 to 3,363,951
SMc03250
Position (kb)
3362
3363 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3361.900 kb on + strand at 3361.901 kb on - strand at 3361.936 kb on + strand at 3361.936 kb on + strand at 3361.937 kb on - strand at 3361.991 kb on - strand, within SMc03248 at 3361.991 kb on - strand, within SMc03248 at 3362.053 kb on + strand, within SMc03248 at 3362.066 kb on - strand, within SMc03248 at 3362.066 kb on - strand, within SMc03248 at 3362.335 kb on + strand, within SMc03248 at 3362.335 kb on + strand, within SMc03248 at 3362.335 kb on + strand, within SMc03248 at 3362.360 kb on + strand, within SMc03248 at 3362.360 kb on + strand, within SMc03248 at 3362.362 kb on + strand, within SMc03248 at 3362.362 kb on + strand, within SMc03248 at 3362.362 kb on + strand, within SMc03248 at 3362.363 kb on - strand, within SMc03248 at 3362.363 kb on - strand, within SMc03248 at 3362.363 kb on - strand, within SMc03248 at 3362.422 kb on + strand, within SMc03248 at 3362.428 kb on + strand, within SMc03248 at 3362.429 kb on - strand, within SMc03248 at 3362.429 kb on - strand, within SMc03248 at 3362.431 kb on - strand, within SMc03248 at 3362.473 kb on + strand, within SMc03248 at 3362.473 kb on + strand, within SMc03248 at 3362.474 kb on - strand, within SMc03248 at 3362.654 kb on - strand at 3362.654 kb on - strand at 3362.814 kb on - strand, within SMc03249 at 3362.814 kb on - strand at 3363.061 kb on + strand at 3363.061 kb on + strand at 3363.062 kb on - strand at 3363.062 kb on - strand at 3363.089 kb on + strand at 3363.090 kb on - strand at 3363.173 kb on + strand, within SMc03751 at 3363.478 kb on + strand at 3363.511 kb on - strand at 3363.852 kb on + strand, within SMc03250 at 3363.853 kb on - strand, within SMc03250 at 3363.853 kb on - strand, within SMc03250
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 3,361,900 + +1.2 3,361,901 - +1.1 3,361,936 + +1.0 3,361,936 + -1.6 3,361,937 - -2.5 3,361,991 - SMc03248 0.11 +1.2 3,361,991 - SMc03248 0.11 -0.7 3,362,053 + SMc03248 0.19 -0.5 3,362,066 - SMc03248 0.20 +0.3 3,362,066 - SMc03248 0.20 -3.0 3,362,335 + SMc03248 0.52 +0.9 3,362,335 + SMc03248 0.52 -0.9 3,362,335 + SMc03248 0.52 -1.3 3,362,360 + SMc03248 0.55 +0.4 3,362,360 + SMc03248 0.55 +0.7 3,362,362 + SMc03248 0.56 +0.3 3,362,362 + SMc03248 0.56 +1.7 3,362,362 + SMc03248 0.56 -0.1 3,362,363 - SMc03248 0.56 -0.2 3,362,363 - SMc03248 0.56 +1.0 3,362,363 - SMc03248 0.56 +0.8 3,362,422 + SMc03248 0.63 +1.4 3,362,428 + SMc03248 0.64 +2.6 3,362,429 - SMc03248 0.64 +0.9 3,362,429 - SMc03248 0.64 -1.4 3,362,431 - SMc03248 0.64 -0.6 3,362,473 + SMc03248 0.69 -0.6 3,362,473 + SMc03248 0.69 +1.4 3,362,474 - SMc03248 0.69 +2.1 3,362,654 - +1.4 3,362,654 - -0.2 3,362,814 - SMc03249 0.34 -1.4 3,362,814 - -0.4 3,363,061 + -0.1 3,363,061 + +1.6 3,363,062 - +0.5 3,363,062 - -0.0 3,363,089 + -0.1 3,363,090 - -0.1 3,363,173 + SMc03751 0.25 +0.2 3,363,478 + -0.8 3,363,511 - +0.0 3,363,852 + SMc03250 0.78 -1.1 3,363,853 - SMc03250 0.79 +0.4 3,363,853 - SMc03250 0.79 +2.2
Or see this region's nucleotide sequence