Strain Fitness in Sinorhizobium meliloti 1021 around SMc03001

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02325 and SMc03000 overlap by 4 nucleotidesSMc03000 and SMc03001 overlap by 1 nucleotidesSMc03001 and SMc03002 are separated by 10 nucleotidesSMc03002 and SMc03003 overlap by 4 nucleotides SMc02325: SMc02325 - ABC transporter ATP-binding protein, at 696,263 to 697,774 SMc02325 SMc03000: SMc03000 - ABC transporter permease, at 697,771 to 698,751 SMc03000 SMc03001: SMc03001 - ABC transporter permease, at 698,751 to 699,755 SMc03001 SMc03002: SMc03002 - hypothetical protein, at 699,766 to 700,080 SMc03002 SMc03003: SMc03003 - Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) (from data), at 700,077 to 701,465 SMc03003 Position (kb) 698 699 700Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 697.893 kb on + strand, within SMc03000at 697.893 kb on + strand, within SMc03000at 698.118 kb on + strand, within SMc03000at 698.118 kb on + strand, within SMc03000at 698.118 kb on + strand, within SMc03000at 698.158 kb on + strand, within SMc03000at 698.158 kb on + strand, within SMc03000at 698.158 kb on + strand, within SMc03000at 698.413 kb on + strand, within SMc03000at 698.414 kb on - strand, within SMc03000at 698.449 kb on + strand, within SMc03000at 698.449 kb on + strand, within SMc03000at 698.631 kb on + strand, within SMc03000at 698.631 kb on + strand, within SMc03000at 698.632 kb on - strand, within SMc03000at 698.632 kb on - strand, within SMc03000at 698.889 kb on + strand, within SMc03001at 699.040 kb on - strand, within SMc03001at 699.264 kb on + strand, within SMc03001at 699.264 kb on + strand, within SMc03001at 699.264 kb on + strand, within SMc03001at 699.264 kb on + strand, within SMc03001at 699.265 kb on - strand, within SMc03001at 699.321 kb on + strand, within SMc03001at 699.363 kb on + strand, within SMc03001at 699.399 kb on + strand, within SMc03001at 699.776 kb on - strandat 699.817 kb on + strand, within SMc03002at 699.818 kb on - strand, within SMc03002at 699.887 kb on - strand, within SMc03002at 700.002 kb on + strand, within SMc03002at 700.106 kb on + strandat 700.255 kb on + strand, within SMc03003at 700.366 kb on - strand, within SMc03003at 700.401 kb on + strand, within SMc03003at 700.401 kb on + strand, within SMc03003at 700.537 kb on - strand, within SMc03003at 700.545 kb on + strand, within SMc03003at 700.546 kb on - strand, within SMc03003

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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697,893 + SMc03000 0.12 -1.1
697,893 + SMc03000 0.12 -1.5
698,118 + SMc03000 0.35 +0.1
698,118 + SMc03000 0.35 +0.6
698,118 + SMc03000 0.35 +0.5
698,158 + SMc03000 0.39 -0.2
698,158 + SMc03000 0.39 +0.4
698,158 + SMc03000 0.39 -0.0
698,413 + SMc03000 0.65 -1.4
698,414 - SMc03000 0.66 +0.9
698,449 + SMc03000 0.69 +0.3
698,449 + SMc03000 0.69 +1.5
698,631 + SMc03000 0.88 +1.5
698,631 + SMc03000 0.88 +0.6
698,632 - SMc03000 0.88 -0.7
698,632 - SMc03000 0.88 -0.2
698,889 + SMc03001 0.14 -0.2
699,040 - SMc03001 0.29 +2.1
699,264 + SMc03001 0.51 -0.8
699,264 + SMc03001 0.51 +1.7
699,264 + SMc03001 0.51 -0.8
699,264 + SMc03001 0.51 +0.4
699,265 - SMc03001 0.51 +1.2
699,321 + SMc03001 0.57 +1.4
699,363 + SMc03001 0.61 +0.8
699,399 + SMc03001 0.64 -0.1
699,776 - -0.6
699,817 + SMc03002 0.16 +0.2
699,818 - SMc03002 0.17 +1.1
699,887 - SMc03002 0.38 -1.3
700,002 + SMc03002 0.75 +0.3
700,106 + -1.4
700,255 + SMc03003 0.13 +0.6
700,366 - SMc03003 0.21 -1.0
700,401 + SMc03003 0.23 -1.2
700,401 + SMc03003 0.23 -1.1
700,537 - SMc03003 0.33 -1.8
700,545 + SMc03003 0.34 +0.9
700,546 - SMc03003 0.34 -2.8

Or see this region's nucleotide sequence