Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02325 and SMc03000 overlap by 4 nucleotides SMc03000 and SMc03001 overlap by 1 nucleotides SMc03001 and SMc03002 are separated by 10 nucleotides SMc03002 and SMc03003 overlap by 4 nucleotides
SMc02325: SMc02325 - ABC transporter ATP-binding protein, at 696,263 to 697,774
SMc02325
SMc03000: SMc03000 - ABC transporter permease, at 697,771 to 698,751
SMc03000
SMc03001: SMc03001 - ABC transporter permease, at 698,751 to 699,755
SMc03001
SMc03002: SMc03002 - hypothetical protein, at 699,766 to 700,080
SMc03002
SMc03003: SMc03003 - Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) <small>(from data)</small>, at 700,077 to 701,465
SMc03003
Position (kb) 698
699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 697.893 kb on + strand, within SMc03000 at 697.893 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.413 kb on + strand, within SMc03000 at 698.414 kb on - strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.632 kb on - strand, within SMc03000 at 698.632 kb on - strand, within SMc03000 at 698.889 kb on + strand, within SMc03001 at 699.040 kb on - strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.265 kb on - strand, within SMc03001 at 699.321 kb on + strand, within SMc03001 at 699.363 kb on + strand, within SMc03001 at 699.399 kb on + strand, within SMc03001 at 699.776 kb on - strand at 699.817 kb on + strand, within SMc03002 at 699.818 kb on - strand, within SMc03002 at 699.887 kb on - strand, within SMc03002 at 700.002 kb on + strand, within SMc03002 at 700.106 kb on + strand at 700.255 kb on + strand, within SMc03003 at 700.366 kb on - strand, within SMc03003 at 700.401 kb on + strand, within SMc03003 at 700.401 kb on + strand, within SMc03003 at 700.537 kb on - strand, within SMc03003 at 700.545 kb on + strand, within SMc03003 at 700.546 kb on - strand, within SMc03003
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 697,893 + SMc03000 0.12 -1.1 697,893 + SMc03000 0.12 -1.5 698,118 + SMc03000 0.35 +0.1 698,118 + SMc03000 0.35 +0.6 698,118 + SMc03000 0.35 +0.5 698,158 + SMc03000 0.39 -0.2 698,158 + SMc03000 0.39 +0.4 698,158 + SMc03000 0.39 -0.0 698,413 + SMc03000 0.65 -1.4 698,414 - SMc03000 0.66 +0.9 698,449 + SMc03000 0.69 +0.3 698,449 + SMc03000 0.69 +1.5 698,631 + SMc03000 0.88 +1.5 698,631 + SMc03000 0.88 +0.6 698,632 - SMc03000 0.88 -0.7 698,632 - SMc03000 0.88 -0.2 698,889 + SMc03001 0.14 -0.2 699,040 - SMc03001 0.29 +2.1 699,264 + SMc03001 0.51 -0.8 699,264 + SMc03001 0.51 +1.7 699,264 + SMc03001 0.51 -0.8 699,264 + SMc03001 0.51 +0.4 699,265 - SMc03001 0.51 +1.2 699,321 + SMc03001 0.57 +1.4 699,363 + SMc03001 0.61 +0.8 699,399 + SMc03001 0.64 -0.1 699,776 - -0.6 699,817 + SMc03002 0.16 +0.2 699,818 - SMc03002 0.17 +1.1 699,887 - SMc03002 0.38 -1.3 700,002 + SMc03002 0.75 +0.3 700,106 + -1.4 700,255 + SMc03003 0.13 +0.6 700,366 - SMc03003 0.21 -1.0 700,401 + SMc03003 0.23 -1.2 700,401 + SMc03003 0.23 -1.1 700,537 - SMc03003 0.33 -1.8 700,545 + SMc03003 0.34 +0.9 700,546 - SMc03003 0.34 -2.8
Or see this region's nucleotide sequence