Strain Fitness in Sinorhizobium meliloti 1021 around SMc02980
Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,100,917 | - | SMc02979 | 0.21 | -1.8 | |
3,100,917 | - | SMc02979 | 0.21 | -3.7 | |
3,100,917 | - | SMc02979 | 0.21 | -2.7 | |
3,101,480 | + | SMc02979 | 0.78 | +0.6 | |
3,101,480 | + | SMc02979 | 0.78 | +1.4 | |
3,101,480 | + | SMc02979 | 0.78 | -0.7 | |
3,101,480 | + | SMc02979 | 0.78 | -3.0 | |
3,101,481 | - | SMc02979 | 0.78 | +0.3 | |
3,101,534 | - | SMc02979 | 0.83 | -0.5 | |
3,102,092 | + | SMc02980 | 0.70 | -1.2 | |
3,102,211 | + | +0.6 | |||
3,102,211 | + | +0.1 | |||
3,102,241 | + | -0.9 | |||
3,102,443 | + | -1.9 | |||
3,102,443 | + | +2.1 | |||
3,102,443 | + | +0.4 | |||
3,102,444 | - | -0.2 | |||
3,102,444 | - | +1.4 | |||
3,102,444 | - | -0.2 | |||
3,102,490 | + | -1.9 | |||
3,102,643 | - | SMc02981 | 0.22 | -0.3 | |
3,102,756 | - | SMc02981 | 0.40 | +0.8 | |
3,102,890 | + | SMc02981 | 0.61 | +0.7 | |
3,102,891 | - | SMc02981 | 0.61 | +0.2 | |
3,102,953 | + | SMc02981 | 0.71 | +0.3 | |
3,102,953 | + | SMc02981 | 0.71 | +6.7 |
Or see this region's nucleotide sequence