Strain Fitness in Sinorhizobium meliloti 1021 around SMc02976
Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Cisplatin 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,097,277 | - | SMc02975 | 0.38 | +1.6 | |
3,097,303 | - | SMc02975 | 0.41 | +0.8 | |
3,097,410 | + | SMc02975 | 0.51 | +1.1 | |
3,097,677 | + | SMc02975 | 0.77 | +1.6 | |
3,097,677 | + | SMc02975 | 0.77 | -1.4 | |
3,097,678 | - | SMc02975 | 0.77 | +1.0 | |
3,097,678 | - | SMc02975 | 0.77 | +0.3 | |
3,097,678 | - | SMc02975 | 0.77 | +0.6 | |
3,097,758 | + | SMc02975 | 0.85 | +1.2 | |
3,097,882 | + | +1.4 | |||
3,097,910 | - | -0.4 | |||
3,097,910 | - | -1.6 | |||
3,098,178 | + | SMc02976 | 0.32 | -4.0 | |
3,098,179 | - | SMc02976 | 0.33 | +0.1 | |
3,098,179 | - | SMc02976 | 0.33 | +1.0 | |
3,098,179 | - | SMc02976 | 0.33 | +0.6 | |
3,098,358 | + | SMc02976 | 0.68 | +0.4 | |
3,098,359 | - | SMc02976 | 0.68 | +1.6 | |
3,098,546 | - | +0.2 | |||
3,098,551 | + | -0.5 | |||
3,098,551 | + | -2.6 | |||
3,098,551 | + | +0.9 | |||
3,098,552 | - | -2.3 | |||
3,098,554 | - | +0.2 | |||
3,098,581 | + | +1.5 | |||
3,098,581 | + | +0.9 | |||
3,098,582 | - | -0.2 | |||
3,098,627 | + | -0.1 | |||
3,099,459 | - | -1.9 | |||
3,099,484 | + | +1.0 | |||
3,099,484 | + | -1.5 | |||
3,099,484 | + | +1.1 | |||
3,099,485 | - | -2.1 | |||
3,099,485 | - | -0.3 | |||
3,099,485 | - | +0.7 | |||
3,099,486 | + | -2.3 | |||
3,099,486 | + | -0.2 | |||
3,099,487 | - | +0.1 | |||
3,099,487 | - | -3.6 |
Or see this region's nucleotide sequence