Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02870 and SMc02871 overlap by 4 nucleotides SMc02871 and SMc02872 are separated by 12 nucleotides
SMc02870: SMc02870 - oxidoreductase, at 225,791 to 226,855
SMc02870
SMc02871: SMc02871 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 2 <small>(from data)</small>, at 226,852 to 227,691
SMc02871
SMc02872: SMc02872 - ABC transporter for N-Acetyl-D-glucosamine, permease protein 1 <small>(from data)</small>, at 227,704 to 228,651
SMc02872
Position (kb) 226
227
228 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 226.171 kb on - strand, within SMc02870 at 226.216 kb on - strand, within SMc02870 at 226.221 kb on + strand, within SMc02870 at 226.221 kb on + strand, within SMc02870 at 226.222 kb on - strand, within SMc02870 at 226.314 kb on + strand, within SMc02870 at 226.314 kb on + strand, within SMc02870 at 226.315 kb on - strand, within SMc02870 at 226.419 kb on + strand, within SMc02870 at 226.419 kb on + strand, within SMc02870 at 226.420 kb on - strand, within SMc02870 at 226.483 kb on + strand, within SMc02870 at 226.483 kb on + strand, within SMc02870 at 226.632 kb on + strand, within SMc02870 at 226.633 kb on - strand, within SMc02870 at 226.633 kb on - strand, within SMc02870 at 226.779 kb on + strand at 226.804 kb on + strand at 226.805 kb on - strand at 226.907 kb on + strand at 226.907 kb on + strand at 227.219 kb on - strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.246 kb on + strand, within SMc02871 at 227.247 kb on - strand, within SMc02871 at 227.272 kb on - strand, within SMc02871 at 227.354 kb on + strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.355 kb on - strand, within SMc02871 at 227.474 kb on + strand, within SMc02871 at 227.631 kb on - strand at 227.631 kb on - strand at 227.696 kb on + strand at 227.697 kb on - strand at 227.697 kb on - strand at 227.705 kb on + strand at 227.706 kb on - strand at 227.706 kb on - strand at 227.734 kb on + strand at 227.735 kb on - strand at 227.748 kb on - strand at 227.748 kb on - strand at 227.748 kb on - strand at 227.912 kb on + strand, within SMc02872 at 227.913 kb on - strand, within SMc02872 at 227.913 kb on - strand at 227.913 kb on - strand, within SMc02872 at 228.080 kb on + strand, within SMc02872 at 228.105 kb on + strand, within SMc02872 at 228.106 kb on - strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.107 kb on + strand, within SMc02872 at 228.108 kb on - strand, within SMc02872 at 228.108 kb on - strand, within SMc02872 at 228.206 kb on + strand, within SMc02872 at 228.206 kb on + strand, within SMc02872 at 228.207 kb on - strand, within SMc02872 at 228.207 kb on - strand, within SMc02872 at 228.291 kb on + strand, within SMc02872 at 228.302 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.506 kb on + strand, within SMc02872 at 228.507 kb on - strand, within SMc02872 at 228.626 kb on + strand at 228.626 kb on + strand at 228.626 kb on + strand at 228.626 kb on + strand at 228.627 kb on - strand at 228.627 kb on - strand at 228.627 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 226,171 - SMc02870 0.36 -0.2 226,216 - SMc02870 0.40 -1.1 226,221 + SMc02870 0.40 +1.1 226,221 + SMc02870 0.40 -0.7 226,222 - SMc02870 0.40 -0.6 226,314 + SMc02870 0.49 -0.5 226,314 + SMc02870 0.49 +0.6 226,315 - SMc02870 0.49 -1.4 226,419 + SMc02870 0.59 +0.0 226,419 + SMc02870 0.59 +0.9 226,420 - SMc02870 0.59 +1.2 226,483 + SMc02870 0.65 -0.1 226,483 + SMc02870 0.65 +0.0 226,632 + SMc02870 0.79 -0.7 226,633 - SMc02870 0.79 +0.2 226,633 - SMc02870 0.79 +0.2 226,779 + -3.0 226,804 + -2.3 226,805 - -0.1 226,907 + +0.3 226,907 + +0.1 227,219 - SMc02871 0.44 +0.1 227,246 + SMc02871 0.47 +1.3 227,246 + SMc02871 0.47 +0.8 227,246 + SMc02871 0.47 +0.0 227,247 - SMc02871 0.47 -0.9 227,272 - SMc02871 0.50 +2.1 227,354 + SMc02871 0.60 -1.0 227,355 - SMc02871 0.60 +0.7 227,355 - SMc02871 0.60 +0.4 227,355 - SMc02871 0.60 -0.1 227,474 + SMc02871 0.74 +0.5 227,631 - -1.1 227,631 - +2.3 227,696 + +1.5 227,697 - -0.3 227,697 - -0.4 227,705 + +1.1 227,706 - +0.1 227,706 - -0.1 227,734 + -0.4 227,735 - -1.1 227,748 - +0.0 227,748 - +1.7 227,748 - +2.4 227,912 + SMc02872 0.22 -0.0 227,913 - SMc02872 0.22 -0.1 227,913 - -1.1 227,913 - SMc02872 0.22 -2.9 228,080 + SMc02872 0.40 -0.8 228,105 + SMc02872 0.42 +0.4 228,106 - SMc02872 0.42 +1.1 228,107 + SMc02872 0.43 -1.0 228,107 + SMc02872 0.43 -2.0 228,107 + SMc02872 0.43 +0.3 228,108 - SMc02872 0.43 +0.6 228,108 - SMc02872 0.43 -4.0 228,206 + SMc02872 0.53 +0.4 228,206 + SMc02872 0.53 +0.1 228,207 - SMc02872 0.53 +0.6 228,207 - SMc02872 0.53 +0.1 228,291 + SMc02872 0.62 -0.5 228,302 + SMc02872 0.63 -2.5 228,506 + SMc02872 0.85 -0.5 228,506 + SMc02872 0.85 -0.6 228,506 + SMc02872 0.85 -0.2 228,507 - SMc02872 0.85 -0.2 228,626 + +0.3 228,626 + -0.1 228,626 + -2.7 228,626 + +0.5 228,627 - +3.4 228,627 - -0.7 228,627 - +0.4
Or see this region's nucleotide sequence