Strain Fitness in Sinorhizobium meliloti 1021 around SMc02799

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02801 and SMc02800 are separated by 32 nucleotidesSMc02800 and SMc02799 are separated by 14 nucleotidesSMc02799 and SMc02798 are separated by 8 nucleotides SMc02801: SMc02801 - chromosome partitioning protein ParB, at 3,645,114 to 3,646,004 SMc02801 SMc02800: SMc02800 - chromosome partitioning protein ParA, at 3,646,037 to 3,646,831 SMc02800 SMc02799: SMc02799 - 16S rRNA methyltransferase GidB, at 3,646,846 to 3,647,487 SMc02799 SMc02798: SMc02798 - tRNA uridine 5-carboxymethylaminomethyl modification protein GidA, at 3,647,496 to 3,649,367 SMc02798 Position (kb) 3646 3647 3648Strain fitness (log2 ratio) -1 0 1at 3647.034 kb on - strand, within SMc02799at 3647.334 kb on + strand, within SMc02799at 3647.335 kb on - strand, within SMc02799at 3647.348 kb on - strand, within SMc02799at 3647.491 kb on - strandat 3647.492 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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3,647,034 - SMc02799 0.29 -1.4
3,647,334 + SMc02799 0.76 -1.4
3,647,335 - SMc02799 0.76 -0.2
3,647,348 - SMc02799 0.78 -1.4
3,647,491 - -0.6
3,647,492 + -1.4

Or see this region's nucleotide sequence