Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02791 and SMc02790 overlap by 4 nucleotides SMc02790 and SMc02789 are separated by 193 nucleotides SMc02789 and SMc02788 are separated by 105 nucleotides SMc02788 and SMc02787 are separated by 167 nucleotides
SMc02791: SMc02791 - shikimate 5-dehydrogenase, at 1,939 to 2,799
SMc02791
SMc02790: SMc02790 - dephospho-CoA kinase, at 2,796 to 3,380
SMc02790
SMc02789: SMc02789 - DNA polymerase III subunit epsilon, at 3,574 to 4,302
SMc02789
SMc02788: SMc02788 - preprotein translocase subunit SecB, at 4,408 to 4,914
SMc02788
SMc02787: SMc02787 - hypothetical protein, at 5,082 to 5,657
SMc02787
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3.438 kb on + strand at 3.438 kb on + strand at 3.439 kb on - strand at 3.439 kb on - strand at 3.464 kb on - strand at 4.300 kb on + strand at 4.300 kb on + strand at 4.300 kb on + strand at 4.307 kb on - strand at 4.351 kb on - strand at 4.959 kb on - strand at 4.972 kb on - strand at 4.972 kb on - strand at 4.972 kb on - strand at 5.035 kb on + strand at 5.036 kb on - strand at 5.036 kb on - strand at 5.038 kb on + strand at 5.038 kb on + strand at 5.039 kb on - strand at 5.039 kb on - strand at 5.039 kb on - strand at 5.040 kb on + strand at 5.281 kb on + strand, within SMc02787 at 5.281 kb on + strand, within SMc02787 at 5.281 kb on + strand, within SMc02787 at 5.282 kb on - strand, within SMc02787 at 5.282 kb on - strand, within SMc02787
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 3,438 + -2.6 3,438 + -1.9 3,439 - +1.0 3,439 - -1.2 3,464 - -0.5 4,300 + +0.3 4,300 + -1.1 4,300 + +0.5 4,307 - +0.4 4,351 - +2.1 4,959 - -0.9 4,972 - +1.8 4,972 - -1.4 4,972 - +0.3 5,035 + -1.0 5,036 - +0.4 5,036 - -0.1 5,038 + -1.1 5,038 + -2.7 5,039 - +0.9 5,039 - +0.6 5,039 - -2.6 5,040 + +0.2 5,281 + SMc02787 0.35 -1.5 5,281 + SMc02787 0.35 +1.3 5,281 + SMc02787 0.35 -2.0 5,282 - SMc02787 0.35 -1.1 5,282 - SMc02787 0.35 -0.2
Or see this region's nucleotide sequence