Strain Fitness in Sinorhizobium meliloti 1021 around SMc02635

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02637 and SMc02636 are separated by 5 nucleotidesSMc02636 and SMc02635 are separated by 322 nucleotidesSMc02635 and SMc02634 are separated by 305 nucleotides SMc02637: SMc02637 - hypothetical protein, at 1,183,063 to 1,183,425 SMc02637 SMc02636: SMc02636 - hypothetical protein, at 1,183,431 to 1,184,036 SMc02636 SMc02635: SMc02635 - DNA repair protein RecO, at 1,184,359 to 1,185,138 SMc02635 SMc02634: SMc02634 - hypothetical protein, at 1,185,444 to 1,187,447 SMc02634 Position (kb) 1184 1185 1186Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1183.424 kb on - strandat 1183.424 kb on - strandat 1183.424 kb on - strandat 1183.667 kb on - strand, within SMc02636at 1183.673 kb on - strand, within SMc02636at 1183.888 kb on + strand, within SMc02636at 1183.946 kb on - strand, within SMc02636at 1183.946 kb on - strand, within SMc02636at 1183.946 kb on - strand, within SMc02636at 1184.033 kb on - strandat 1184.033 kb on - strandat 1184.033 kb on - strandat 1184.047 kb on + strandat 1184.047 kb on + strandat 1184.171 kb on + strandat 1184.171 kb on + strandat 1184.172 kb on - strandat 1184.217 kb on - strandat 1184.268 kb on + strandat 1184.268 kb on + strandat 1184.268 kb on + strandat 1184.292 kb on + strandat 1184.383 kb on + strandat 1184.383 kb on + strandat 1184.383 kb on + strandat 1184.383 kb on + strandat 1184.383 kb on + strandat 1184.384 kb on - strandat 1184.417 kb on + strandat 1184.418 kb on - strandat 1184.660 kb on - strand, within SMc02635at 1184.726 kb on - strand, within SMc02635at 1184.878 kb on + strand, within SMc02635at 1184.882 kb on + strand, within SMc02635at 1184.883 kb on - strand, within SMc02635at 1184.929 kb on + strand, within SMc02635at 1185.025 kb on + strand, within SMc02635at 1185.026 kb on - strand, within SMc02635at 1185.026 kb on - strand, within SMc02635at 1185.046 kb on + strand, within SMc02635at 1185.046 kb on + strand, within SMc02635at 1185.215 kb on - strandat 1185.873 kb on + strand, within SMc02634at 1185.874 kb on - strand, within SMc02634at 1186.015 kb on + strand, within SMc02634at 1186.015 kb on + strand, within SMc02634at 1186.016 kb on - strand, within SMc02634at 1186.016 kb on - strand, within SMc02634

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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1,183,424 - +0.6
1,183,424 - -0.2
1,183,424 - +0.1
1,183,667 - SMc02636 0.39 -1.4
1,183,673 - SMc02636 0.40 +0.9
1,183,888 + SMc02636 0.75 +0.2
1,183,946 - SMc02636 0.85 +0.4
1,183,946 - SMc02636 0.85 -2.4
1,183,946 - SMc02636 0.85 +0.6
1,184,033 - +0.3
1,184,033 - -3.0
1,184,033 - -2.4
1,184,047 + +0.5
1,184,047 + -3.7
1,184,171 + -0.2
1,184,171 + +1.8
1,184,172 - +0.2
1,184,217 - +0.9
1,184,268 + -2.0
1,184,268 + +0.4
1,184,268 + -0.2
1,184,292 + -1.1
1,184,383 + +0.5
1,184,383 + -1.3
1,184,383 + -0.2
1,184,383 + +1.7
1,184,383 + +0.4
1,184,384 - -1.5
1,184,417 + -4.1
1,184,418 - -2.9
1,184,660 - SMc02635 0.39 -2.2
1,184,726 - SMc02635 0.47 -1.8
1,184,878 + SMc02635 0.67 -3.4
1,184,882 + SMc02635 0.67 -4.4
1,184,883 - SMc02635 0.67 -2.5
1,184,929 + SMc02635 0.73 -3.4
1,185,025 + SMc02635 0.85 -2.1
1,185,026 - SMc02635 0.86 -3.4
1,185,026 - SMc02635 0.86 -2.8
1,185,046 + SMc02635 0.88 -5.0
1,185,046 + SMc02635 0.88 -1.8
1,185,215 - -1.8
1,185,873 + SMc02634 0.21 -0.4
1,185,874 - SMc02634 0.21 +1.2
1,186,015 + SMc02634 0.28 +0.2
1,186,015 + SMc02634 0.28 +0.3
1,186,016 - SMc02634 0.29 -0.9
1,186,016 - SMc02634 0.29 -0.6

Or see this region's nucleotide sequence