Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02582 and SMc02583 are separated by 63 nucleotides SMc02583 and SMc02584 are separated by 14 nucleotides SMc02584 and SMc02585 are separated by 186 nucleotides
SMc02582: SMc02582 - hypothetical protein, at 71,294 to 72,130
SMc02582
SMc02583: SMc02583 - hypothetical protein, at 72,194 to 72,718
SMc02583
SMc02584: SMc02584 - transcriptional regulator, at 72,733 to 73,317
SMc02584
SMc02585: SMc02585 - sensor histidine kinase transmembrane protein, at 73,504 to 74,805
SMc02585
Position (kb) 72
73 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 71.201 kb on - strand at 71.343 kb on + strand at 71.343 kb on + strand at 71.343 kb on + strand at 71.469 kb on + strand, within SMc02582 at 71.526 kb on + strand, within SMc02582 at 71.605 kb on - strand, within SMc02582 at 71.658 kb on - strand, within SMc02582 at 71.682 kb on + strand, within SMc02582 at 71.843 kb on + strand, within SMc02582 at 71.843 kb on + strand, within SMc02582 at 71.843 kb on + strand, within SMc02582 at 72.034 kb on + strand, within SMc02582 at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.265 kb on - strand, within SMc02583 at 72.537 kb on - strand, within SMc02583 at 72.547 kb on + strand, within SMc02583 at 72.547 kb on + strand, within SMc02583 at 72.547 kb on + strand, within SMc02583 at 72.547 kb on + strand, within SMc02583 at 72.547 kb on + strand, within SMc02583 at 72.548 kb on - strand, within SMc02583 at 72.548 kb on - strand, within SMc02583 at 72.548 kb on - strand, within SMc02583 at 72.717 kb on - strand at 73.331 kb on - strand at 73.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 71,201 - +0.1 71,343 + -1.2 71,343 + -2.2 71,343 + -1.2 71,469 + SMc02582 0.21 -1.9 71,526 + SMc02582 0.28 +0.8 71,605 - SMc02582 0.37 -2.3 71,658 - SMc02582 0.43 -2.2 71,682 + SMc02582 0.46 -1.7 71,843 + SMc02582 0.66 -0.7 71,843 + SMc02582 0.66 -2.6 71,843 + SMc02582 0.66 +4.3 72,034 + SMc02582 0.88 +1.5 72,204 + -0.9 72,204 + -0.2 72,204 + -2.5 72,204 + -0.9 72,204 + -2.9 72,204 + -0.5 72,205 - -1.1 72,205 - -0.6 72,205 - -0.5 72,205 - -2.1 72,205 - -1.7 72,205 - -0.9 72,265 - SMc02583 0.14 -0.9 72,537 - SMc02583 0.65 -1.3 72,547 + SMc02583 0.67 -4.2 72,547 + SMc02583 0.67 -0.5 72,547 + SMc02583 0.67 -1.5 72,547 + SMc02583 0.67 -2.2 72,547 + SMc02583 0.67 -1.3 72,548 - SMc02583 0.67 -2.9 72,548 - SMc02583 0.67 -0.9 72,548 - SMc02583 0.67 -0.5 72,717 - -0.5 73,331 - +0.9 73,371 - +2.1
Or see this region's nucleotide sequence