Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02493 and SMc02492 overlap by 4 nucleotides SMc02492 and SMc02491 are separated by 31 nucleotides
SMc02493: SMc02493 - hypothetical protein, at 3,301,634 to 3,302,230
SMc02493
SMc02492: SMc02492 - hypothetical protein, at 3,302,227 to 3,303,396
SMc02492
SMc02491: SMc02491 - hypothetical protein, at 3,303,428 to 3,304,564
SMc02491
Position (kb)
3302
3303
3304 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3301.510 kb on - strand at 3301.631 kb on - strand at 3301.778 kb on + strand, within SMc02493 at 3301.787 kb on + strand, within SMc02493 at 3301.788 kb on - strand, within SMc02493 at 3301.788 kb on - strand, within SMc02493 at 3301.910 kb on + strand, within SMc02493 at 3301.910 kb on + strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.911 kb on - strand, within SMc02493 at 3301.979 kb on - strand, within SMc02493 at 3302.092 kb on + strand, within SMc02493 at 3302.121 kb on + strand, within SMc02493 at 3302.274 kb on + strand at 3302.275 kb on - strand at 3302.275 kb on - strand at 3302.388 kb on - strand, within SMc02492 at 3302.388 kb on - strand, within SMc02492 at 3302.485 kb on + strand, within SMc02492 at 3302.486 kb on - strand, within SMc02492 at 3302.572 kb on + strand, within SMc02492 at 3302.632 kb on + strand, within SMc02492 at 3302.632 kb on + strand, within SMc02492 at 3302.633 kb on - strand, within SMc02492 at 3302.887 kb on + strand, within SMc02492 at 3302.887 kb on + strand, within SMc02492 at 3302.887 kb on + strand, within SMc02492 at 3302.888 kb on - strand, within SMc02492 at 3302.888 kb on - strand, within SMc02492 at 3302.888 kb on - strand, within SMc02492 at 3302.888 kb on - strand, within SMc02492 at 3302.968 kb on + strand, within SMc02492 at 3302.968 kb on + strand, within SMc02492 at 3302.969 kb on - strand, within SMc02492 at 3303.016 kb on + strand, within SMc02492 at 3303.016 kb on + strand, within SMc02492 at 3303.017 kb on - strand, within SMc02492 at 3303.017 kb on - strand, within SMc02492 at 3303.100 kb on + strand, within SMc02492 at 3303.101 kb on - strand, within SMc02492 at 3303.103 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.109 kb on + strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.110 kb on - strand, within SMc02492 at 3303.158 kb on + strand, within SMc02492 at 3303.205 kb on + strand, within SMc02492 at 3303.206 kb on - strand, within SMc02492 at 3303.245 kb on + strand, within SMc02492 at 3303.258 kb on - strand, within SMc02492 at 3303.258 kb on - strand, within SMc02492 at 3303.258 kb on - strand, within SMc02492 at 3303.316 kb on + strand at 3303.333 kb on + strand at 3303.334 kb on - strand at 3303.346 kb on + strand at 3303.353 kb on - strand at 3303.371 kb on - strand at 3303.429 kb on + strand at 3303.466 kb on + strand at 3303.466 kb on + strand at 3303.573 kb on - strand, within SMc02491 at 3303.573 kb on - strand, within SMc02491 at 3303.625 kb on + strand, within SMc02491 at 3303.626 kb on - strand, within SMc02491 at 3303.686 kb on + strand, within SMc02491 at 3303.865 kb on + strand, within SMc02491 at 3304.105 kb on - strand, within SMc02491 at 3304.141 kb on + strand, within SMc02491 at 3304.142 kb on - strand, within SMc02491 at 3304.153 kb on + strand, within SMc02491 at 3304.328 kb on - strand, within SMc02491
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 3,301,510 - +1.7 3,301,631 - +1.4 3,301,778 + SMc02493 0.24 -1.0 3,301,787 + SMc02493 0.26 -0.2 3,301,788 - SMc02493 0.26 +1.9 3,301,788 - SMc02493 0.26 +0.6 3,301,910 + SMc02493 0.46 +0.4 3,301,910 + SMc02493 0.46 -1.3 3,301,911 - SMc02493 0.46 -0.5 3,301,911 - SMc02493 0.46 +1.3 3,301,911 - SMc02493 0.46 +1.1 3,301,911 - SMc02493 0.46 +0.6 3,301,979 - SMc02493 0.58 -0.4 3,302,092 + SMc02493 0.77 -1.3 3,302,121 + SMc02493 0.82 -0.3 3,302,274 + -1.9 3,302,275 - -1.9 3,302,275 - +1.3 3,302,388 - SMc02492 0.14 +0.6 3,302,388 - SMc02492 0.14 +0.2 3,302,485 + SMc02492 0.22 +0.3 3,302,486 - SMc02492 0.22 -0.3 3,302,572 + SMc02492 0.29 +0.5 3,302,632 + SMc02492 0.35 -1.2 3,302,632 + SMc02492 0.35 +1.5 3,302,633 - SMc02492 0.35 +0.7 3,302,887 + SMc02492 0.56 -1.0 3,302,887 + SMc02492 0.56 -1.8 3,302,887 + SMc02492 0.56 +0.9 3,302,888 - SMc02492 0.56 -1.4 3,302,888 - SMc02492 0.56 +4.8 3,302,888 - SMc02492 0.56 +2.2 3,302,888 - SMc02492 0.56 -2.5 3,302,968 + SMc02492 0.63 -0.3 3,302,968 + SMc02492 0.63 +0.3 3,302,969 - SMc02492 0.63 -2.2 3,303,016 + SMc02492 0.67 +0.6 3,303,016 + SMc02492 0.67 -0.7 3,303,017 - SMc02492 0.68 +0.6 3,303,017 - SMc02492 0.68 +1.1 3,303,100 + SMc02492 0.75 +0.7 3,303,101 - SMc02492 0.75 -0.1 3,303,103 + SMc02492 0.75 +4.7 3,303,109 + SMc02492 0.75 +0.8 3,303,109 + SMc02492 0.75 -0.9 3,303,109 + SMc02492 0.75 +1.8 3,303,109 + SMc02492 0.75 +1.7 3,303,109 + SMc02492 0.75 -0.2 3,303,109 + SMc02492 0.75 -0.0 3,303,109 + SMc02492 0.75 +0.6 3,303,110 - SMc02492 0.75 -0.9 3,303,110 - SMc02492 0.75 +0.5 3,303,110 - SMc02492 0.75 +2.3 3,303,110 - SMc02492 0.75 +3.4 3,303,110 - SMc02492 0.75 -0.1 3,303,110 - SMc02492 0.75 +0.6 3,303,110 - SMc02492 0.75 +0.1 3,303,110 - SMc02492 0.75 -0.9 3,303,158 + SMc02492 0.80 -0.8 3,303,205 + SMc02492 0.84 +0.9 3,303,206 - SMc02492 0.84 +1.3 3,303,245 + SMc02492 0.87 +1.3 3,303,258 - SMc02492 0.88 +0.3 3,303,258 - SMc02492 0.88 +1.6 3,303,258 - SMc02492 0.88 -1.9 3,303,316 + +0.7 3,303,333 + -0.2 3,303,334 - +0.4 3,303,346 + +1.0 3,303,353 - +0.4 3,303,371 - +0.4 3,303,429 + -0.4 3,303,466 + +3.4 3,303,466 + -1.2 3,303,573 - SMc02491 0.13 +0.5 3,303,573 - SMc02491 0.13 +0.6 3,303,625 + SMc02491 0.17 +0.6 3,303,626 - SMc02491 0.17 +0.6 3,303,686 + SMc02491 0.23 -2.7 3,303,865 + SMc02491 0.38 -1.4 3,304,105 - SMc02491 0.60 -1.3 3,304,141 + SMc02491 0.63 -0.2 3,304,142 - SMc02491 0.63 -0.5 3,304,153 + SMc02491 0.64 +0.4 3,304,328 - SMc02491 0.79 +0.9
Or see this region's nucleotide sequence