Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02469 and SMc02468 are separated by 29 nucleotides SMc02468 and SMc02467 are separated by 219 nucleotides SMc02467 and SMc02466 are separated by 150 nucleotides
SMc02469: SMc02469 - oxidoreductase, at 3,328,092 to 3,329,192
SMc02469
SMc02468: SMc02468 - hypothetical protein, at 3,329,222 to 3,329,863
SMc02468
SMc02467: SMc02467 - peptide methionine sulfoxide reductase, at 3,330,083 to 3,330,679
SMc02467
SMc02466: SMc02466 - succinate dehydrogenase iron-sulfur subunit, at 3,330,830 to 3,331,609
SMc02466
Position (kb)
3329
3330 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3328.363 kb on - strand, within SMc02469 at 3328.363 kb on - strand, within SMc02469 at 3328.587 kb on + strand, within SMc02469 at 3328.588 kb on - strand, within SMc02469 at 3328.591 kb on - strand, within SMc02469 at 3328.591 kb on - strand, within SMc02469 at 3328.630 kb on - strand, within SMc02469 at 3328.630 kb on - strand, within SMc02469 at 3328.630 kb on - strand, within SMc02469 at 3328.630 kb on - strand, within SMc02469 at 3328.632 kb on + strand, within SMc02469 at 3328.632 kb on + strand, within SMc02469 at 3328.632 kb on + strand, within SMc02469 at 3328.633 kb on - strand, within SMc02469 at 3328.861 kb on - strand, within SMc02469 at 3328.861 kb on - strand, within SMc02469 at 3328.861 kb on - strand, within SMc02469 at 3328.861 kb on - strand, within SMc02469 at 3328.919 kb on - strand, within SMc02469 at 3328.969 kb on - strand, within SMc02469 at 3329.207 kb on + strand at 3329.285 kb on - strand at 3329.285 kb on - strand at 3329.472 kb on - strand, within SMc02468 at 3329.642 kb on + strand, within SMc02468 at 3329.643 kb on - strand, within SMc02468 at 3329.643 kb on - strand, within SMc02468 at 3329.645 kb on + strand, within SMc02468 at 3329.645 kb on + strand, within SMc02468 at 3329.645 kb on + strand, within SMc02468 at 3329.645 kb on + strand, within SMc02468 at 3329.645 kb on + strand, within SMc02468 at 3329.646 kb on - strand, within SMc02468 at 3329.646 kb on - strand, within SMc02468 at 3329.646 kb on - strand, within SMc02468 at 3329.646 kb on - strand, within SMc02468 at 3329.646 kb on - strand, within SMc02468 at 3329.646 kb on - strand, within SMc02468 at 3329.646 kb on - strand, within SMc02468 at 3329.774 kb on + strand, within SMc02468 at 3329.774 kb on + strand, within SMc02468 at 3329.775 kb on - strand, within SMc02468 at 3330.103 kb on - strand at 3330.162 kb on + strand, within SMc02467 at 3330.162 kb on + strand, within SMc02467 at 3330.163 kb on - strand, within SMc02467 at 3330.204 kb on + strand, within SMc02467 at 3330.204 kb on + strand, within SMc02467 at 3330.204 kb on + strand, within SMc02467 at 3330.205 kb on - strand, within SMc02467 at 3330.205 kb on - strand, within SMc02467 at 3330.249 kb on - strand, within SMc02467 at 3330.249 kb on - strand, within SMc02467 at 3330.340 kb on + strand, within SMc02467 at 3330.340 kb on + strand, within SMc02467 at 3330.340 kb on + strand, within SMc02467 at 3330.341 kb on - strand, within SMc02467 at 3330.424 kb on - strand, within SMc02467 at 3330.492 kb on + strand, within SMc02467 at 3330.492 kb on + strand, within SMc02467 at 3330.492 kb on + strand, within SMc02467 at 3330.493 kb on - strand, within SMc02467 at 3330.493 kb on - strand, within SMc02467 at 3330.601 kb on + strand, within SMc02467 at 3330.602 kb on - strand, within SMc02467 at 3330.606 kb on + strand, within SMc02467 at 3330.607 kb on - strand, within SMc02467 at 3330.607 kb on - strand, within SMc02467 at 3330.607 kb on - strand, within SMc02467 at 3330.701 kb on + strand at 3330.705 kb on - strand at 3330.709 kb on - strand at 3330.709 kb on - strand at 3330.709 kb on - strand at 3330.709 kb on - strand at 3330.739 kb on - strand at 3330.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 3,328,363 - SMc02469 0.25 -0.4 3,328,363 - SMc02469 0.25 -0.9 3,328,587 + SMc02469 0.45 -2.5 3,328,588 - SMc02469 0.45 +0.2 3,328,591 - SMc02469 0.45 +0.4 3,328,591 - SMc02469 0.45 -0.3 3,328,630 - SMc02469 0.49 -0.8 3,328,630 - SMc02469 0.49 -0.0 3,328,630 - SMc02469 0.49 -1.6 3,328,630 - SMc02469 0.49 -0.6 3,328,632 + SMc02469 0.49 -0.0 3,328,632 + SMc02469 0.49 -0.2 3,328,632 + SMc02469 0.49 +0.3 3,328,633 - SMc02469 0.49 -1.7 3,328,861 - SMc02469 0.70 +0.1 3,328,861 - SMc02469 0.70 +1.2 3,328,861 - SMc02469 0.70 -0.2 3,328,861 - SMc02469 0.70 +0.8 3,328,919 - SMc02469 0.75 -0.6 3,328,969 - SMc02469 0.80 +0.7 3,329,207 + -2.4 3,329,285 - +0.4 3,329,285 - +0.4 3,329,472 - SMc02468 0.39 +1.5 3,329,642 + SMc02468 0.65 -3.1 3,329,643 - SMc02468 0.66 -0.3 3,329,643 - SMc02468 0.66 -0.9 3,329,645 + SMc02468 0.66 -0.3 3,329,645 + SMc02468 0.66 +0.1 3,329,645 + SMc02468 0.66 -0.1 3,329,645 + SMc02468 0.66 -0.2 3,329,645 + SMc02468 0.66 +1.7 3,329,646 - SMc02468 0.66 -0.4 3,329,646 - SMc02468 0.66 -0.9 3,329,646 - SMc02468 0.66 +0.5 3,329,646 - SMc02468 0.66 +1.3 3,329,646 - SMc02468 0.66 +0.1 3,329,646 - SMc02468 0.66 +0.5 3,329,646 - SMc02468 0.66 +1.4 3,329,774 + SMc02468 0.86 +0.1 3,329,774 + SMc02468 0.86 -0.2 3,329,775 - SMc02468 0.86 +0.4 3,330,103 - -1.1 3,330,162 + SMc02467 0.13 +1.5 3,330,162 + SMc02467 0.13 -0.9 3,330,163 - SMc02467 0.13 +1.3 3,330,204 + SMc02467 0.20 +0.5 3,330,204 + SMc02467 0.20 -1.6 3,330,204 + SMc02467 0.20 +0.8 3,330,205 - SMc02467 0.20 -2.8 3,330,205 - SMc02467 0.20 -1.2 3,330,249 - SMc02467 0.28 -0.0 3,330,249 - SMc02467 0.28 -2.3 3,330,340 + SMc02467 0.43 +0.9 3,330,340 + SMc02467 0.43 +1.6 3,330,340 + SMc02467 0.43 +0.3 3,330,341 - SMc02467 0.43 +0.8 3,330,424 - SMc02467 0.57 +2.3 3,330,492 + SMc02467 0.69 -0.6 3,330,492 + SMc02467 0.69 -1.7 3,330,492 + SMc02467 0.69 -3.0 3,330,493 - SMc02467 0.69 -1.7 3,330,493 - SMc02467 0.69 -0.2 3,330,601 + SMc02467 0.87 -1.7 3,330,602 - SMc02467 0.87 -0.5 3,330,606 + SMc02467 0.88 -0.4 3,330,607 - SMc02467 0.88 +1.3 3,330,607 - SMc02467 0.88 -3.8 3,330,607 - SMc02467 0.88 -0.9 3,330,701 + +0.6 3,330,705 - +1.4 3,330,709 - -2.3 3,330,709 - +0.5 3,330,709 - +1.4 3,330,709 - +1.1 3,330,739 - -0.6 3,330,739 - +0.4
Or see this region's nucleotide sequence