Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02171 and SMc02170 are separated by 281 nucleotides SMc02170 and SMc02169 overlap by 1 nucleotides SMc02169 and SMc02167 overlap by 4 nucleotides
SMc02171: SMc02171 - periplasmic binding ABC transporter protein, at 523,892 to 524,917
SMc02171
SMc02170: SMc02170 - ABC transporter permease, at 525,199 to 526,281
SMc02170
SMc02169: SMc02169 - ABC transporter ATP-binding protein, at 526,281 to 527,063
SMc02169
SMc02167: SMc02167 - fructose transport system kinase, at 527,060 to 527,680
SMc02167
Position (kb) 525
526
527 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 524.691 kb on + strand, within SMc02171 at 524.732 kb on + strand, within SMc02171 at 524.801 kb on - strand, within SMc02171 at 525.272 kb on + strand at 525.273 kb on - strand at 525.273 kb on - strand at 525.273 kb on - strand at 525.294 kb on + strand at 525.629 kb on - strand, within SMc02170 at 525.672 kb on + strand, within SMc02170 at 525.824 kb on - strand, within SMc02170 at 525.865 kb on + strand, within SMc02170 at 525.865 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.895 kb on + strand, within SMc02170 at 525.896 kb on - strand, within SMc02170 at 525.902 kb on - strand, within SMc02170 at 525.902 kb on - strand, within SMc02170 at 525.973 kb on + strand, within SMc02170 at 525.974 kb on - strand, within SMc02170 at 525.974 kb on - strand, within SMc02170 at 525.976 kb on - strand, within SMc02170 at 525.976 kb on - strand, within SMc02170 at 525.976 kb on - strand, within SMc02170 at 526.065 kb on + strand, within SMc02170 at 526.210 kb on + strand at 526.210 kb on + strand at 526.211 kb on - strand at 526.211 kb on - strand at 526.272 kb on - strand at 526.327 kb on - strand at 526.435 kb on + strand, within SMc02169 at 527.152 kb on + strand, within SMc02167
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 524,691 + SMc02171 0.78 +0.5 524,732 + SMc02171 0.82 +0.8 524,801 - SMc02171 0.89 -3.2 525,272 + -1.4 525,273 - +0.2 525,273 - +1.6 525,273 - -0.3 525,294 + +1.0 525,629 - SMc02170 0.40 -3.2 525,672 + SMc02170 0.44 -1.9 525,824 - SMc02170 0.58 +0.3 525,865 + SMc02170 0.61 -0.6 525,865 + SMc02170 0.61 +1.2 525,895 + SMc02170 0.64 -3.8 525,895 + SMc02170 0.64 -0.7 525,895 + SMc02170 0.64 -0.2 525,895 + SMc02170 0.64 -0.6 525,896 - SMc02170 0.64 -0.2 525,902 - SMc02170 0.65 -0.6 525,902 - SMc02170 0.65 -1.0 525,973 + SMc02170 0.71 -1.4 525,974 - SMc02170 0.72 +0.1 525,974 - SMc02170 0.72 +0.6 525,976 - SMc02170 0.72 -1.0 525,976 - SMc02170 0.72 -1.3 525,976 - SMc02170 0.72 +0.9 526,065 + SMc02170 0.80 +0.0 526,210 + +0.4 526,210 + -0.4 526,211 - -0.7 526,211 - +0.3 526,272 - +1.2 526,327 - -0.3 526,435 + SMc02169 0.20 +1.1 527,152 + SMc02167 0.15 +0.4
Or see this region's nucleotide sequence