Strain Fitness in Sinorhizobium meliloti 1021 around SMc02046

Experiment: Cisplatin 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01837 and SMc01838 are separated by 3 nucleotidesSMc01838 and SMc02046 are separated by 3 nucleotidesSMc02046 and SMc01939 overlap by 4 nucleotidesSMc01939 and SMc01940 are separated by 11 nucleotidesSMc01940 and SMc01941 are separated by 12 nucleotidesSMc01941 and SMc01942 are separated by 28 nucleotides SMc01837: SMc01837 - urease subunit alpha, at 2,660,750 to 2,662,462 SMc01837 SMc01838: SMc01838 - urease accessory protein, at 2,662,466 to 2,663,116 SMc01838 SMc02046: SMc02046 - hypothetical protein, at 2,663,120 to 2,663,539 SMc02046 SMc01939: SMc01939 - urease subunit beta, at 2,663,536 to 2,663,841 SMc01939 SMc01940: SMc01940 - hypothetical protein, at 2,663,853 to 2,664,107 SMc01940 SMc01941: SMc01941 - urease subunit gamma, at 2,664,120 to 2,664,422 SMc01941 SMc01942: SMc01942 - urease accessory protein, at 2,664,451 to 2,665,284 SMc01942 Position (kb) 2663 2664Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2662.126 kb on + strand, within SMc01837at 2662.127 kb on - strand, within SMc01837at 2662.127 kb on - strand, within SMc01837at 2662.170 kb on - strand, within SMc01837at 2662.170 kb on - strand, within SMc01837at 2662.234 kb on + strand, within SMc01837at 2662.234 kb on + strand, within SMc01837at 2662.434 kb on + strandat 2662.434 kb on + strandat 2662.455 kb on + strandat 2662.546 kb on - strand, within SMc01838at 2662.546 kb on - strand, within SMc01838at 2662.680 kb on + strand, within SMc01838at 2662.681 kb on - strand, within SMc01838at 2662.681 kb on - strand, within SMc01838at 2662.681 kb on - strand, within SMc01838at 2662.792 kb on + strand, within SMc01838at 2662.793 kb on - strand, within SMc01838at 2662.794 kb on + strand, within SMc01838at 2662.883 kb on + strand, within SMc01838at 2662.884 kb on - strand, within SMc01838at 2662.884 kb on - strand, within SMc01838at 2662.884 kb on - strand, within SMc01838at 2663.291 kb on + strand, within SMc02046at 2663.376 kb on + strand, within SMc02046at 2663.376 kb on + strand, within SMc02046at 2663.539 kb on + strandat 2663.539 kb on + strandat 2663.539 kb on + strandat 2663.540 kb on - strandat 2663.540 kb on - strandat 2663.643 kb on + strand, within SMc01939at 2663.724 kb on - strand, within SMc01939at 2663.824 kb on - strandat 2663.824 kb on - strandat 2664.486 kb on + strandat 2664.486 kb on + strandat 2664.486 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml
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2,662,126 + SMc01837 0.80 +1.0
2,662,127 - SMc01837 0.80 +2.1
2,662,127 - SMc01837 0.80 -2.0
2,662,170 - SMc01837 0.83 -2.3
2,662,170 - SMc01837 0.83 +0.4
2,662,234 + SMc01837 0.87 -2.1
2,662,234 + SMc01837 0.87 -0.5
2,662,434 + +0.5
2,662,434 + +0.1
2,662,455 + -1.8
2,662,546 - SMc01838 0.12 +1.6
2,662,546 - SMc01838 0.12 +0.6
2,662,680 + SMc01838 0.33 +0.1
2,662,681 - SMc01838 0.33 +0.4
2,662,681 - SMc01838 0.33 +0.8
2,662,681 - SMc01838 0.33 -0.2
2,662,792 + SMc01838 0.50 +0.5
2,662,793 - SMc01838 0.50 -0.6
2,662,794 + SMc01838 0.50 -0.8
2,662,883 + SMc01838 0.64 -1.0
2,662,884 - SMc01838 0.64 +1.1
2,662,884 - SMc01838 0.64 -1.0
2,662,884 - SMc01838 0.64 +0.6
2,663,291 + SMc02046 0.41 -0.8
2,663,376 + SMc02046 0.61 -1.8
2,663,376 + SMc02046 0.61 -0.4
2,663,539 + +1.0
2,663,539 + -1.0
2,663,539 + -0.7
2,663,540 - -1.2
2,663,540 - +0.8
2,663,643 + SMc01939 0.35 +0.0
2,663,724 - SMc01939 0.61 -2.9
2,663,824 - -2.7
2,663,824 - +0.9
2,664,486 + +0.3
2,664,486 + -0.4
2,664,486 + -2.0

Or see this region's nucleotide sequence