Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02027 and SMc02028 overlap by 4 nucleotides SMc02028 and SMc02029 overlap by 4 nucleotides
SMc02027: SMc02027 - peptide ABC transporter ATP-binding protein, at 2,731,146 to 2,732,774
SMc02027
SMc02028: SMc02028 - peptide ABC transporter permease, at 2,732,771 to 2,733,589
SMc02028
SMc02029: SMc02029 - peptide ABC transporter permease, at 2,733,586 to 2,734,530
SMc02029
Position (kb)
2732
2733
2734 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2731.924 kb on + strand, within SMc02027 at 2731.924 kb on + strand, within SMc02027 at 2731.924 kb on + strand, within SMc02027 at 2731.925 kb on - strand, within SMc02027 at 2731.925 kb on - strand, within SMc02027 at 2731.925 kb on - strand, within SMc02027 at 2731.925 kb on - strand, within SMc02027 at 2731.925 kb on - strand, within SMc02027 at 2731.925 kb on - strand, within SMc02027 at 2731.937 kb on + strand, within SMc02027 at 2732.026 kb on + strand, within SMc02027 at 2732.026 kb on + strand, within SMc02027 at 2732.027 kb on - strand, within SMc02027 at 2732.113 kb on + strand, within SMc02027 at 2732.159 kb on + strand, within SMc02027 at 2732.324 kb on - strand, within SMc02027 at 2732.563 kb on + strand, within SMc02027 at 2732.563 kb on + strand, within SMc02027 at 2732.564 kb on - strand, within SMc02027 at 2733.064 kb on + strand, within SMc02028 at 2733.064 kb on + strand, within SMc02028 at 2733.065 kb on - strand, within SMc02028 at 2733.065 kb on - strand, within SMc02028 at 2733.066 kb on + strand, within SMc02028 at 2733.164 kb on - strand, within SMc02028 at 2733.164 kb on - strand, within SMc02028 at 2733.164 kb on - strand, within SMc02028 at 2733.166 kb on - strand, within SMc02028 at 2733.227 kb on + strand, within SMc02028 at 2733.620 kb on + strand at 2733.620 kb on + strand at 2733.621 kb on - strand at 2733.653 kb on + strand at 2733.653 kb on + strand at 2733.653 kb on + strand at 2733.653 kb on + strand at 2733.653 kb on + strand at 2733.653 kb on + strand at 2733.654 kb on - strand at 2733.654 kb on - strand at 2733.654 kb on - strand at 2734.031 kb on + strand, within SMc02029 at 2734.031 kb on + strand, within SMc02029 at 2734.032 kb on - strand, within SMc02029 at 2734.032 kb on - strand, within SMc02029 at 2734.316 kb on - strand, within SMc02029 at 2734.316 kb on - strand, within SMc02029 at 2734.519 kb on - strand at 2734.525 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 2,731,924 + SMc02027 0.48 +0.1 2,731,924 + SMc02027 0.48 +0.9 2,731,924 + SMc02027 0.48 -2.6 2,731,925 - SMc02027 0.48 +0.2 2,731,925 - SMc02027 0.48 +1.6 2,731,925 - SMc02027 0.48 -3.4 2,731,925 - SMc02027 0.48 -1.3 2,731,925 - SMc02027 0.48 -2.1 2,731,925 - SMc02027 0.48 -1.3 2,731,937 + SMc02027 0.49 -0.0 2,732,026 + SMc02027 0.54 +2.6 2,732,026 + SMc02027 0.54 -1.6 2,732,027 - SMc02027 0.54 -0.0 2,732,113 + SMc02027 0.59 -2.8 2,732,159 + SMc02027 0.62 +0.3 2,732,324 - SMc02027 0.72 +0.4 2,732,563 + SMc02027 0.87 -1.5 2,732,563 + SMc02027 0.87 -0.8 2,732,564 - SMc02027 0.87 +0.3 2,733,064 + SMc02028 0.36 +0.4 2,733,064 + SMc02028 0.36 +1.1 2,733,065 - SMc02028 0.36 +0.3 2,733,065 - SMc02028 0.36 +0.4 2,733,066 + SMc02028 0.36 -1.3 2,733,164 - SMc02028 0.48 +0.5 2,733,164 - SMc02028 0.48 -0.3 2,733,164 - SMc02028 0.48 -0.2 2,733,166 - SMc02028 0.48 +0.3 2,733,227 + SMc02028 0.56 +0.2 2,733,620 + -0.3 2,733,620 + +1.5 2,733,621 - -1.0 2,733,653 + +0.0 2,733,653 + -2.2 2,733,653 + -0.4 2,733,653 + +0.7 2,733,653 + +1.2 2,733,653 + -1.6 2,733,654 - +0.2 2,733,654 - -0.5 2,733,654 - +1.4 2,734,031 + SMc02029 0.47 +0.0 2,734,031 + SMc02029 0.47 +1.6 2,734,032 - SMc02029 0.47 -1.1 2,734,032 - SMc02029 0.47 -4.4 2,734,316 - SMc02029 0.77 +0.2 2,734,316 - SMc02029 0.77 -0.9 2,734,519 - -0.6 2,734,525 + -0.2
Or see this region's nucleotide sequence