Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01972 and SMc01973 overlap by 4 nucleotides SMc01973 and SMc01974 are separated by 123 nucleotides
SMc01972: SMc01972 - oxidoreductase, at 2,695,795 to 2,697,108
SMc01972
SMc01973: SMc01973 - glutamine synthetase, at 2,697,105 to 2,698,472
SMc01973
SMc01974: SMc01974 - transcriptional regulator, at 2,698,596 to 2,699,288
SMc01974
Position (kb)
2697
2698
2699 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 2696.166 kb on - strand, within SMc01972 at 2696.227 kb on - strand, within SMc01972 at 2696.227 kb on - strand, within SMc01972 at 2696.228 kb on + strand, within SMc01972 at 2696.229 kb on - strand, within SMc01972 at 2696.364 kb on - strand, within SMc01972 at 2696.415 kb on + strand, within SMc01972 at 2696.472 kb on - strand, within SMc01972 at 2696.535 kb on + strand, within SMc01972 at 2696.535 kb on + strand, within SMc01972 at 2696.535 kb on + strand, within SMc01972 at 2696.536 kb on - strand, within SMc01972 at 2696.536 kb on - strand, within SMc01972 at 2696.536 kb on - strand, within SMc01972 at 2696.570 kb on + strand, within SMc01972 at 2696.571 kb on - strand, within SMc01972 at 2696.636 kb on + strand, within SMc01972 at 2696.637 kb on - strand, within SMc01972 at 2696.690 kb on + strand, within SMc01972 at 2696.700 kb on - strand, within SMc01972 at 2696.700 kb on - strand, within SMc01972 at 2696.700 kb on - strand, within SMc01972 at 2696.703 kb on + strand, within SMc01972 at 2696.704 kb on - strand, within SMc01972 at 2696.704 kb on - strand, within SMc01972 at 2696.704 kb on - strand, within SMc01972 at 2696.925 kb on - strand, within SMc01972 at 2697.050 kb on + strand at 2697.053 kb on + strand at 2697.053 kb on + strand at 2697.054 kb on - strand at 2697.054 kb on - strand at 2697.108 kb on + strand at 2697.108 kb on + strand at 2697.109 kb on - strand at 2697.302 kb on - strand, within SMc01973 at 2697.388 kb on + strand, within SMc01973 at 2697.388 kb on + strand, within SMc01973 at 2697.389 kb on - strand, within SMc01973 at 2697.482 kb on - strand, within SMc01973 at 2697.532 kb on + strand, within SMc01973 at 2697.982 kb on + strand, within SMc01973 at 2698.030 kb on + strand, within SMc01973 at 2698.098 kb on + strand, within SMc01973 at 2698.403 kb on + strand at 2698.404 kb on - strand at 2698.411 kb on - strand at 2698.472 kb on + strand at 2698.514 kb on + strand at 2698.514 kb on + strand at 2698.515 kb on - strand at 2698.518 kb on + strand at 2698.551 kb on - strand at 2698.551 kb on - strand at 2698.638 kb on - strand at 2698.653 kb on + strand at 2698.754 kb on + strand, within SMc01974 at 2698.937 kb on - strand, within SMc01974 at 2699.037 kb on + strand, within SMc01974 at 2699.037 kb on + strand, within SMc01974 at 2699.038 kb on - strand, within SMc01974 at 2699.140 kb on - strand, within SMc01974 at 2699.140 kb on - strand, within SMc01974 at 2699.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 2,696,166 - SMc01972 0.28 -2.3 2,696,227 - SMc01972 0.33 +0.4 2,696,227 - SMc01972 0.33 +0.6 2,696,228 + SMc01972 0.33 -2.1 2,696,229 - SMc01972 0.33 -2.4 2,696,364 - SMc01972 0.43 +1.0 2,696,415 + SMc01972 0.47 -1.2 2,696,472 - SMc01972 0.52 +0.6 2,696,535 + SMc01972 0.56 -0.0 2,696,535 + SMc01972 0.56 -2.3 2,696,535 + SMc01972 0.56 +1.5 2,696,536 - SMc01972 0.56 -4.2 2,696,536 - SMc01972 0.56 +1.6 2,696,536 - SMc01972 0.56 -0.8 2,696,570 + SMc01972 0.59 +2.0 2,696,571 - SMc01972 0.59 +1.9 2,696,636 + SMc01972 0.64 +0.5 2,696,637 - SMc01972 0.64 -3.4 2,696,690 + SMc01972 0.68 +0.1 2,696,700 - SMc01972 0.69 +1.3 2,696,700 - SMc01972 0.69 -0.4 2,696,700 - SMc01972 0.69 -2.0 2,696,703 + SMc01972 0.69 -1.0 2,696,704 - SMc01972 0.69 -0.0 2,696,704 - SMc01972 0.69 +0.6 2,696,704 - SMc01972 0.69 -0.5 2,696,925 - SMc01972 0.86 +0.8 2,697,050 + +0.7 2,697,053 + -0.4 2,697,053 + +2.6 2,697,054 - +0.5 2,697,054 - +5.2 2,697,108 + +0.4 2,697,108 + +0.6 2,697,109 - -1.7 2,697,302 - SMc01973 0.14 +0.4 2,697,388 + SMc01973 0.21 -1.7 2,697,388 + SMc01973 0.21 +0.4 2,697,389 - SMc01973 0.21 +0.1 2,697,482 - SMc01973 0.28 +2.9 2,697,532 + SMc01973 0.31 -0.1 2,697,982 + SMc01973 0.64 +0.9 2,698,030 + SMc01973 0.68 +3.2 2,698,098 + SMc01973 0.73 +0.5 2,698,403 + -0.2 2,698,404 - -0.6 2,698,411 - +0.7 2,698,472 + +1.8 2,698,514 + -1.6 2,698,514 + +0.0 2,698,515 - -1.2 2,698,518 + +0.0 2,698,551 - -0.7 2,698,551 - +0.4 2,698,638 - +1.7 2,698,653 + +1.0 2,698,754 + SMc01974 0.23 -0.1 2,698,937 - SMc01974 0.49 -3.4 2,699,037 + SMc01974 0.64 +0.6 2,699,037 + SMc01974 0.64 -2.2 2,699,038 - SMc01974 0.64 -3.2 2,699,140 - SMc01974 0.78 +1.5 2,699,140 - SMc01974 0.78 +0.9 2,699,286 + -1.5
Or see this region's nucleotide sequence