Experiment: Cisplatin 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01909 and SMc01910 overlap by 1 nucleotides SMc01910 and SMc01911 are separated by 88 nucleotides
SMc01909: SMc01909 - hypothetical protein, at 1,371,000 to 1,372,292
SMc01909
SMc01910: SMc01910 - hypothetical protein, at 1,372,292 to 1,375,753
SMc01910
SMc01911: SMc01911 - hypothetical protein, at 1,375,842 to 1,376,240
SMc01911
Position (kb)
1372
1373
1374
1375
1376 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1371.352 kb on + strand, within SMc01909 at 1371.352 kb on + strand, within SMc01909 at 1371.352 kb on + strand, within SMc01909 at 1371.353 kb on - strand, within SMc01909 at 1371.353 kb on - strand, within SMc01909 at 1371.353 kb on - strand, within SMc01909 at 1371.353 kb on - strand, within SMc01909 at 1371.353 kb on - strand, within SMc01909 at 1371.512 kb on + strand, within SMc01909 at 1371.513 kb on - strand, within SMc01909 at 1371.513 kb on - strand, within SMc01909 at 1371.592 kb on - strand, within SMc01909 at 1371.592 kb on - strand, within SMc01909 at 1371.737 kb on + strand, within SMc01909 at 1372.394 kb on + strand at 1372.394 kb on + strand at 1372.394 kb on + strand at 1372.394 kb on + strand at 1372.493 kb on + strand at 1372.550 kb on + strand at 1372.551 kb on - strand at 1372.652 kb on + strand, within SMc01910 at 1372.652 kb on + strand, within SMc01910 at 1372.652 kb on + strand, within SMc01910 at 1372.653 kb on - strand, within SMc01910 at 1372.653 kb on - strand, within SMc01910 at 1372.873 kb on + strand, within SMc01910 at 1372.894 kb on - strand, within SMc01910 at 1373.704 kb on + strand, within SMc01910 at 1374.192 kb on + strand, within SMc01910 at 1375.287 kb on - strand, within SMc01910 at 1375.354 kb on + strand, within SMc01910 at 1375.393 kb on + strand, within SMc01910 at 1375.393 kb on + strand, within SMc01910 at 1375.394 kb on - strand, within SMc01910 at 1375.463 kb on - strand at 1375.523 kb on + strand at 1375.524 kb on - strand at 1375.524 kb on - strand at 1375.680 kb on - strand at 1375.772 kb on + strand at 1375.772 kb on + strand at 1375.772 kb on + strand at 1375.773 kb on - strand at 1375.773 kb on - strand at 1376.372 kb on - strand at 1376.521 kb on - strand at 1376.521 kb on - strand at 1376.521 kb on - strand at 1376.521 kb on - strand at 1376.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.001 mg/ml remove 1,371,352 + SMc01909 0.27 -1.2 1,371,352 + SMc01909 0.27 -2.0 1,371,352 + SMc01909 0.27 +0.5 1,371,353 - SMc01909 0.27 +0.4 1,371,353 - SMc01909 0.27 +0.1 1,371,353 - SMc01909 0.27 +0.5 1,371,353 - SMc01909 0.27 -0.5 1,371,353 - SMc01909 0.27 +0.0 1,371,512 + SMc01909 0.40 +0.5 1,371,513 - SMc01909 0.40 -0.0 1,371,513 - SMc01909 0.40 -0.4 1,371,592 - SMc01909 0.46 -1.9 1,371,592 - SMc01909 0.46 +0.5 1,371,737 + SMc01909 0.57 +0.5 1,372,394 + -1.1 1,372,394 + -1.4 1,372,394 + -0.3 1,372,394 + -0.6 1,372,493 + +0.4 1,372,550 + -0.9 1,372,551 - +1.4 1,372,652 + SMc01910 0.10 +0.8 1,372,652 + SMc01910 0.10 -0.2 1,372,652 + SMc01910 0.10 -0.8 1,372,653 - SMc01910 0.10 -0.2 1,372,653 - SMc01910 0.10 +0.3 1,372,873 + SMc01910 0.17 -2.6 1,372,894 - SMc01910 0.17 -0.1 1,373,704 + SMc01910 0.41 -1.5 1,374,192 + SMc01910 0.55 -1.5 1,375,287 - SMc01910 0.87 +2.6 1,375,354 + SMc01910 0.88 -2.0 1,375,393 + SMc01910 0.90 -0.8 1,375,393 + SMc01910 0.90 -0.1 1,375,394 - SMc01910 0.90 -0.1 1,375,463 - -0.1 1,375,523 + +0.1 1,375,524 - -1.5 1,375,524 - -0.1 1,375,680 - -0.3 1,375,772 + +0.9 1,375,772 + -1.6 1,375,772 + -2.1 1,375,773 - -0.9 1,375,773 - +0.6 1,376,372 - -0.5 1,376,521 - -0.8 1,376,521 - -0.3 1,376,521 - -2.9 1,376,521 - +1.0 1,376,559 + -0.1
Or see this region's nucleotide sequence